Wall clock time and date at job start Tue Mar 31 2020 17:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46573 * 2 1 4 4 C 1.54798 * 109.47052 * 119.99503 * 2 1 3 5 5 N 1.45115 * 109.53933 * 187.87606 * 4 2 1 6 6 C 1.34777 * 118.75378 * 90.69711 * 5 4 2 7 7 O 1.21366 * 119.99960 * 173.73728 * 6 5 4 8 8 C 1.49355 * 120.00218 * 353.73773 * 6 5 4 9 9 O 1.21378 * 119.99882 * 353.78498 * 8 6 5 10 10 N 1.34774 * 119.99852 * 173.78949 * 8 6 5 11 11 C 1.39748 * 119.99719 * 182.92167 * 10 8 6 12 12 C 1.39335 * 119.95307 * 143.98078 * 11 10 8 13 13 C 1.38475 * 120.42325 * 179.97438 * 12 11 10 14 14 C 1.37699 * 120.32565 * 0.02562 * 13 12 11 15 15 C 1.40740 * 119.89767 * 359.97438 * 14 13 12 16 16 C 1.41408 * 120.20980 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99925 * 30.87057 * 16 15 14 18 18 C 1.39935 * 119.99973 * 210.88042 * 16 15 14 19 19 N 1.30822 * 120.00013 * 8.48181 * 18 16 15 20 20 Si 1.86805 * 119.99601 * 188.48440 * 18 16 15 21 21 H 1.48508 * 109.46897 * 89.99831 * 20 18 16 22 22 H 1.48504 * 109.46711 * 209.99564 * 20 18 16 23 23 H 1.48502 * 109.47176 * 329.99658 * 20 18 16 24 24 C 1.38308 * 119.95041 * 323.69846 * 11 10 8 25 25 C 1.47511 * 122.48969 * 270.71992 * 5 4 2 26 26 C 1.53566 * 111.02928 * 41.62858 * 25 5 4 27 27 C 1.51537 * 109.57984 * 39.97871 * 26 25 5 28 28 O 1.38019 * 109.46814 * 240.00508 * 2 1 3 29 29 H 1.09003 * 109.47018 * 300.00244 * 1 2 3 30 30 H 1.09000 * 109.47139 * 60.00385 * 1 2 3 31 31 H 1.08999 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46183 * 307.90459 * 4 2 1 33 33 H 1.09000 * 109.46057 * 67.86912 * 4 2 1 34 34 H 0.97004 * 120.00565 * 2.90942 * 10 8 6 35 35 H 1.08001 * 119.79518 * 359.96732 * 12 11 10 36 36 H 1.07998 * 119.83661 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.04615 * 179.97438 * 14 13 12 38 38 H 0.97007 * 119.99471 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.16088 * 359.97438 * 24 11 10 40 40 H 1.09001 * 109.16658 * 162.03023 * 25 5 4 41 41 H 1.09004 * 109.16126 * 281.22977 * 25 5 4 42 42 H 1.08996 * 109.45359 * 160.01089 * 26 25 5 43 43 H 1.08999 * 109.45465 * 279.94693 * 26 25 5 44 44 H 1.09000 * 109.58839 * 28.37912 * 27 26 25 45 45 H 1.08999 * 109.59145 * 148.67182 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7296 1.2640 5 7 3.4850 -0.5703 1.3629 6 6 3.9753 0.4797 2.0510 7 8 5.1697 0.5737 2.2452 8 6 3.0489 1.5277 2.5747 9 8 1.8705 1.4952 2.2858 10 7 3.5215 2.5095 3.3678 11 6 2.6449 3.4547 3.9073 12 6 2.8618 3.9518 5.1908 13 6 1.9996 4.8890 5.7348 14 6 0.9174 5.3398 5.0126 15 6 0.6854 4.8469 3.7149 16 6 -0.4237 5.3057 2.9672 17 1 -0.7917 6.3112 3.1088 18 6 -1.0444 4.4570 2.0439 19 7 -0.7099 3.1934 1.9892 20 14 -2.3506 5.1284 0.8895 21 1 -1.7074 5.6090 -0.3598 22 1 -3.3229 4.0541 0.5640 23 1 -3.0598 6.2556 1.5465 24 6 1.5667 3.8998 3.1643 25 6 4.4314 -1.5139 0.7384 26 6 3.9600 -1.9189 -0.6658 27 6 3.3880 -0.7098 -1.3779 28 8 1.9901 -0.6505 -1.1270 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.5718 -0.3037 2.1482 33 1 1.8021 -1.7898 1.1963 34 1 4.4701 2.5601 3.5643 35 1 3.7076 3.6039 5.7652 36 1 2.1765 5.2675 6.7306 37 1 0.2476 6.0705 5.4414 38 1 -1.1400 2.6052 1.3488 39 1 1.4004 3.5189 2.1674 40 1 5.4112 -1.0419 0.6647 41 1 4.5106 -2.4055 1.3605 42 1 4.8045 -2.3089 -1.2339 43 1 3.1923 -2.6883 -0.5831 44 1 3.8654 0.1953 -1.0022 45 1 3.5657 -0.7988 -2.4496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453637232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:34 Heat of formation + Delta-G solvation = -86.182669 kcal Electronic energy + Delta-G solvation = -30095.135512 eV Core-core repulsion = 26077.682007 eV Total energy + Delta-G solvation = -4017.453506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.35043 -40.67405 -39.68499 -38.77606 -36.84574 -35.93706 -34.96648 -34.57828 -31.52542 -31.37309 -30.32783 -28.16335 -27.38387 -27.07447 -25.38079 -23.28989 -22.79879 -22.38297 -21.58033 -20.76170 -19.53785 -18.76643 -18.32830 -17.73497 -17.54566 -17.25409 -16.78980 -16.54029 -16.45238 -16.30895 -15.77041 -15.43655 -14.96801 -14.75659 -14.54956 -14.46193 -14.08797 -13.91011 -13.77900 -13.48104 -13.45153 -13.13507 -12.88612 -12.82157 -12.76028 -12.61655 -12.40130 -12.22418 -12.21095 -12.00211 -11.73312 -11.59555 -11.47133 -11.06382 -10.85777 -10.66917 -10.19160 -9.81126 -9.20635 -8.81648 -8.36919 -6.27035 0.20918 0.97003 1.13288 1.31885 1.40842 1.50366 1.53170 2.12684 2.26572 2.40961 2.69636 2.86692 3.28112 3.70081 3.76844 3.81208 4.00147 4.08947 4.10987 4.31985 4.42165 4.49495 4.49747 4.67157 4.69279 4.72631 4.77089 4.86971 4.89325 5.00482 5.05215 5.10549 5.15196 5.21060 5.25155 5.28454 5.39069 5.48539 5.71259 5.85847 5.91081 6.01533 6.19137 6.36518 6.43971 6.61341 6.67162 6.72534 7.04121 7.07185 7.11514 8.49346 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.005041 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.387030 B = 5553.324662 C = 7629.333979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.108 3.892 3 H 0.021 0.979 4 C 0.071 3.929 5 N -0.575 5.575 6 C 0.508 3.492 7 O -0.541 6.541 8 C 0.474 3.526 9 O -0.472 6.472 10 N -0.636 5.636 11 C 0.132 3.868 12 C -0.250 4.250 13 C -0.081 4.081 14 C -0.248 4.248 15 C 0.089 3.911 16 C -0.504 4.504 17 H 0.070 0.930 18 C 0.034 3.966 19 N -0.790 5.790 20 Si 0.968 3.032 21 H -0.269 1.269 22 H -0.268 1.268 23 H -0.262 1.262 24 C -0.168 4.168 25 C 0.102 3.898 26 C -0.152 4.152 27 C 0.065 3.935 28 O -0.398 6.398 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.418 0.582 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.283 0.717 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.088 0.912 44 H 0.028 0.972 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.254 -12.006 -5.782 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.049 3.951 3 H 0.039 0.961 4 C -0.052 4.052 5 N -0.307 5.307 6 C 0.291 3.709 7 O -0.419 6.419 8 C 0.255 3.745 9 O -0.344 6.344 10 N -0.283 5.283 11 C 0.040 3.960 12 C -0.271 4.271 13 C -0.099 4.099 14 C -0.268 4.268 15 C 0.086 3.914 16 C -0.534 4.534 17 H 0.089 0.911 18 C -0.183 4.183 19 N -0.415 5.415 20 Si 0.791 3.209 21 H -0.194 1.194 22 H -0.193 1.193 23 H -0.186 1.186 24 C -0.189 4.189 25 C -0.019 4.019 26 C -0.190 4.190 27 C -0.011 4.011 28 O -0.317 6.317 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.255 0.745 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.106 0.894 44 H 0.047 0.953 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.871 -12.396 -6.156 15.452 hybrid contribution -0.034 0.759 0.005 0.760 sum 6.837 -11.637 -6.151 14.832 Atomic orbital electron populations 1.21596 0.91710 1.02930 1.02523 1.21652 0.95745 0.93310 0.84436 0.96079 1.22991 0.78247 1.02489 1.01478 1.47900 1.08471 1.24431 1.49887 1.20145 0.87766 0.83077 0.79935 1.90695 1.16004 1.77288 1.57904 1.20523 0.88947 0.83720 0.81306 1.90937 1.16204 1.72995 1.54314 1.43007 1.11577 1.26130 1.47547 1.17759 0.92955 0.91934 0.93388 1.20489 1.05024 1.06844 0.94783 1.20704 0.93950 0.96367 0.98912 1.21296 1.01889 1.07938 0.95650 1.17841 0.91535 0.90743 0.91287 1.19694 1.12982 1.00165 1.20512 0.91132 1.26575 0.99431 0.94764 0.97513 1.69955 1.36945 1.04300 1.30283 0.85409 0.78037 0.79043 0.78461 1.19428 1.19282 1.18600 1.21386 0.95026 1.02020 1.00510 1.22227 0.92251 0.92563 0.94815 1.22431 1.03547 0.98856 0.94141 1.22379 0.80197 0.97057 1.01435 1.86225 1.24418 1.76876 1.44198 0.91279 0.92523 0.90524 0.88069 0.88091 0.74455 0.85935 0.85370 0.88365 0.90630 0.86176 0.89400 0.89126 0.86149 0.89378 0.95313 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.55 71.98 0.69 -3.19 16 2 C 0.11 3.30 2.56 31.21 0.08 3.38 16 3 H 0.02 0.81 7.18 -2.39 -0.02 0.79 16 4 C 0.07 1.98 4.41 87.25 0.38 2.36 16 5 N -0.57 -15.63 2.19 -819.67 -1.80 -17.42 16 6 C 0.51 16.81 7.68 87.24 0.67 17.48 16 7 O -0.54 -18.60 15.84 -3.30 -0.05 -18.65 16 8 C 0.47 18.41 7.47 87.24 0.65 19.06 16 9 O -0.47 -20.42 9.27 -3.33 -0.03 -20.46 16 10 N -0.64 -24.74 5.32 -304.98 -1.62 -26.36 16 11 C 0.13 6.04 6.26 38.16 0.24 6.27 16 12 C -0.25 -10.45 9.97 22.59 0.23 -10.23 16 13 C -0.08 -3.42 10.02 22.20 0.22 -3.20 16 14 C -0.25 -12.07 9.79 22.75 0.22 -11.85 16 15 C 0.09 4.81 5.53 -21.31 -0.12 4.70 16 16 C -0.50 -27.42 9.05 23.46 0.21 -27.21 16 17 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 18 C 0.03 1.73 5.28 85.25 0.45 2.18 16 19 N -0.79 -40.98 10.89 21.82 0.24 -40.74 16 20 Si 0.97 39.27 29.57 68.60 2.03 41.30 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 22 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 C -0.17 -8.84 7.26 22.86 0.17 -8.68 16 25 C 0.10 1.99 6.11 86.38 0.53 2.51 16 26 C -0.15 -2.30 5.79 30.30 0.18 -2.13 16 27 C 0.07 1.37 6.38 71.50 0.46 1.83 16 28 O -0.40 -10.71 9.47 -117.92 -1.12 -11.83 16 29 H 0.07 2.41 7.68 -2.39 -0.02 2.39 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.10 3.39 5.41 -2.39 -0.01 3.38 16 33 H 0.10 2.29 8.11 -2.39 -0.02 2.27 16 34 H 0.42 14.01 8.30 -92.71 -0.77 13.24 16 35 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.28 13.52 7.83 -92.70 -0.73 12.79 16 39 H 0.12 6.76 4.63 -2.91 -0.01 6.75 16 40 H 0.09 1.83 7.08 -2.39 -0.02 1.81 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.29 8.01 -2.39 -0.02 1.27 16 44 H 0.03 0.72 7.40 -2.39 -0.02 0.71 16 45 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -63.29 361.34 3.20 -60.09 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: 0.30 Total: 40.79 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 5.25 Total: -6.71 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.18 Total: -84.53 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -1.20 Total: -50.93 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -63.29 3.20 -60.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453637232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.093 kcal (2) G-P(sol) polarization free energy of solvation -63.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds