Wall clock time and date at job start Tue Mar 31 2020 17:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.43721 * 2 1 4 4 C 1.47690 * 109.43729 * 240.09280 * 2 1 3 5 5 O 1.42555 * 113.66378 * 179.17628 * 4 2 1 6 6 C 1.40525 * 113.54979 * 87.75287 * 5 4 2 7 7 C 1.54292 * 109.86897 * 264.71549 * 6 5 4 8 8 N 1.48179 * 110.69631 * 39.38008 * 7 6 5 9 9 C 1.34774 * 118.51088 * 221.23055 * 8 7 6 10 10 O 1.21358 * 120.00202 * 358.48133 * 9 8 7 11 11 C 1.49364 * 119.99890 * 178.48725 * 9 8 7 12 12 O 1.21374 * 119.99504 * 353.79245 * 11 9 8 13 13 N 1.34770 * 119.99925 * 173.79986 * 11 9 8 14 14 C 1.39740 * 119.99964 * 175.58247 * 13 11 9 15 15 C 1.39340 * 119.95709 * 35.93533 * 14 13 11 16 16 C 1.38475 * 120.42512 * 180.30689 * 15 14 13 17 17 C 1.37697 * 120.32708 * 359.72776 * 16 15 14 18 18 C 1.40747 * 119.89712 * 359.97438 * 17 16 15 19 19 C 1.41408 * 120.20340 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99701 * 209.93185 * 19 18 17 21 21 C 1.39929 * 120.00147 * 29.94682 * 19 18 17 22 22 N 1.30823 * 120.00027 * 10.99855 * 21 19 18 23 23 Si 1.86799 * 119.99603 * 191.00791 * 21 19 18 24 24 H 1.48495 * 109.47577 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46945 * 119.99863 * 23 21 19 26 26 H 1.48508 * 109.46660 * 239.99339 * 23 21 19 27 27 C 1.38311 * 119.95131 * 215.68711 * 14 13 11 28 28 C 1.44457 * 122.97525 * 41.50110 * 8 7 6 29 29 H 1.08995 * 109.47013 * 179.91514 * 1 2 3 30 30 H 1.09007 * 109.46814 * 299.91231 * 1 2 3 31 31 H 1.09000 * 109.47062 * 59.90929 * 1 2 3 32 32 H 1.08996 * 108.64528 * 58.08639 * 4 2 1 33 33 H 1.09004 * 108.63644 * 300.25478 * 4 2 1 34 34 H 1.09003 * 109.40913 * 144.58736 * 6 5 4 35 35 H 1.09006 * 109.33544 * 24.79388 * 6 5 4 36 36 H 1.09007 * 109.23179 * 279.06423 * 7 6 5 37 37 H 1.09002 * 109.23335 * 159.69714 * 7 6 5 38 38 H 0.96998 * 120.00226 * 355.57420 * 13 11 9 39 39 H 1.08003 * 119.78494 * 0.02562 * 15 14 13 40 40 H 1.07997 * 119.83407 * 179.74016 * 16 15 14 41 41 H 1.07998 * 120.04958 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00137 * 180.02562 * 22 21 19 43 43 H 1.07994 * 120.16363 * 359.96948 * 27 14 13 44 44 H 1.09004 * 109.49172 * 30.74730 * 28 8 7 45 45 H 1.09002 * 109.49201 * 150.83001 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0280 0.0000 4 6 2.0215 -0.6944 -1.2073 5 8 3.4430 -0.7305 -1.3077 6 6 4.0241 -1.8320 -0.6567 7 6 4.4678 -1.4270 0.7644 8 7 3.4698 -0.5265 1.3879 9 6 3.9119 0.5285 2.1007 10 8 5.1036 0.7080 2.2433 11 6 2.9350 1.4768 2.7151 12 8 1.7496 1.3636 2.4802 13 7 3.3699 2.4581 3.5301 14 6 2.4685 3.4010 4.0312 15 6 1.1711 3.0156 4.3629 16 6 0.2680 3.9433 4.8542 17 6 0.6443 5.2567 5.0257 18 6 1.9532 5.6596 4.7009 19 6 2.3464 7.0068 4.8740 20 1 3.0999 7.4363 4.2305 21 6 1.7595 7.7834 5.8792 22 7 1.0125 7.2166 6.7915 23 14 2.0423 9.6294 5.9183 24 1 2.9182 10.0202 4.7846 25 1 0.7393 10.3324 5.8028 26 1 2.6946 10.0032 7.1990 27 6 2.8668 4.7144 4.2020 28 6 2.0446 -0.7313 1.2712 29 1 -0.3633 -1.0276 -0.0015 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 1.6226 -0.1889 -2.0867 33 1 1.6466 -1.7179 -1.1973 34 1 4.8908 -2.1720 -1.2236 35 1 3.2943 -2.6392 -0.5920 36 1 5.4283 -0.9146 0.7084 37 1 4.5748 -2.3228 1.3762 38 1 4.3086 2.5098 3.7689 39 1 0.8667 1.9877 4.2316 40 1 -0.7363 3.6350 5.1043 41 1 -0.0638 5.9765 5.4089 42 1 0.6054 7.7549 7.4882 43 1 3.8734 5.0134 3.9495 44 1 1.8361 -1.7980 1.1878 45 1 1.5460 -0.3307 2.1538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453690614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:39 Heat of formation + Delta-G solvation = -71.149583 kcal Electronic energy + Delta-G solvation = -28883.974849 eV Core-core repulsion = 24867.173227 eV Total energy + Delta-G solvation = -4016.801622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14630 -39.52789 -38.42839 -37.27065 -35.92305 -34.54084 -34.28624 -33.06263 -30.05492 -29.86769 -28.54029 -26.63115 -26.43083 -25.32473 -24.74577 -22.27877 -21.22774 -21.01558 -20.44298 -19.52481 -17.86715 -17.69846 -17.20630 -16.70391 -16.18555 -15.84171 -15.56388 -15.29710 -15.04289 -14.74870 -14.57986 -14.35563 -13.93625 -13.75703 -13.41270 -13.03266 -12.97803 -12.87041 -12.40165 -12.20367 -12.13600 -11.82815 -11.77506 -11.70584 -11.41287 -11.21007 -11.13916 -10.94289 -10.73965 -10.64436 -10.54999 -10.10724 -9.88937 -9.75038 -9.34617 -9.09546 -8.94679 -8.78412 -7.48609 -7.01271 -6.72512 -4.41525 1.49871 2.37923 2.76742 2.82385 3.08450 3.13847 3.17670 3.46040 3.53232 3.71488 3.94793 4.46497 4.54077 4.59841 4.65264 4.77336 4.78505 5.01665 5.07940 5.16177 5.27076 5.31277 5.49861 5.57599 5.60000 5.62035 5.77971 5.89536 6.11154 6.19988 6.21215 6.36312 6.46843 6.62052 6.80574 6.87250 6.99055 7.00673 7.01815 7.21585 7.46572 7.49731 7.72271 7.92763 7.99791 8.03567 8.20789 8.37769 8.60460 8.87266 8.90498 10.22898 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.002673 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.061837 B =10472.084561 C =10897.927349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 H 0.084 0.916 4 C 0.064 3.936 5 O -0.367 6.367 6 C 0.051 3.949 7 C 0.079 3.921 8 N -0.576 5.576 9 C 0.506 3.494 10 O -0.524 6.524 11 C 0.497 3.503 12 O -0.496 6.496 13 N -0.629 5.629 14 C 0.139 3.861 15 C -0.216 4.216 16 C -0.100 4.100 17 C -0.153 4.153 18 C 0.121 3.879 19 C -0.465 4.465 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.803 5.803 23 Si 0.910 3.090 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.275 1.275 27 C -0.232 4.232 28 C 0.090 3.910 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.412 0.588 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.279 0.721 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 -16.681 -10.851 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 H 0.102 0.898 4 C -0.013 4.013 5 O -0.285 6.285 6 C -0.027 4.027 7 C -0.043 4.043 8 N -0.309 5.309 9 C 0.289 3.711 10 O -0.400 6.400 11 C 0.279 3.721 12 O -0.372 6.372 13 N -0.273 5.273 14 C 0.048 3.952 15 C -0.237 4.237 16 C -0.119 4.119 17 C -0.173 4.173 18 C 0.118 3.882 19 C -0.496 4.496 20 H 0.096 0.904 21 C -0.142 4.142 22 N -0.429 5.429 23 Si 0.735 3.265 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.254 4.254 28 C -0.033 4.033 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.248 0.752 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.090 0.910 43 H 0.116 0.884 44 H 0.084 0.916 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.876 -16.513 -10.870 19.789 hybrid contribution 0.471 0.614 0.363 0.855 sum 1.348 -15.899 -10.507 19.105 Atomic orbital electron populations 1.21615 0.93197 1.01533 1.03168 1.21493 0.97080 1.01773 0.94719 0.89795 1.21741 0.80693 1.00132 0.98687 1.87510 1.20278 1.46940 1.73725 1.22880 0.99040 0.88879 0.91925 1.22801 0.93490 0.94059 0.93971 1.47562 1.07688 1.25926 1.49702 1.20386 0.88694 0.82086 0.79917 1.90726 1.16528 1.73289 1.59503 1.19934 0.88616 0.82963 0.80569 1.90614 1.16472 1.69891 1.60226 1.43180 1.12677 1.26650 1.44833 1.17470 0.90130 0.87688 0.99940 1.20421 0.93492 0.99242 1.10505 1.20612 0.97445 0.94041 0.99847 1.21436 0.96666 0.94901 1.04295 1.17384 0.90229 0.92398 0.88193 1.19539 1.20345 0.95296 1.14392 0.90439 1.25857 0.93261 1.00827 0.94246 1.69791 1.25222 1.37474 1.10442 0.86226 0.79064 0.82152 0.79045 1.18500 1.19804 1.20037 1.20835 0.99476 0.90536 1.14507 1.22607 0.79050 0.99766 1.01838 0.93002 0.90738 0.92532 0.89749 0.93310 0.88516 0.92528 0.88347 0.90676 0.75215 0.87530 0.88836 0.86226 0.91007 0.88378 0.91645 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.15 37.16 0.34 -1.01 16 2 C -0.13 -1.47 2.27 -91.90 -0.21 -1.68 16 3 H 0.08 1.22 7.69 -51.92 -0.40 0.83 16 4 C 0.06 0.62 5.26 34.59 0.18 0.80 16 5 O -0.37 -4.17 10.23 -34.09 -0.35 -4.52 16 6 C 0.05 0.42 6.50 37.83 0.25 0.67 16 7 C 0.08 0.79 6.54 -2.44 -0.02 0.77 16 8 N -0.58 -7.31 2.54 -172.12 -0.44 -7.74 16 9 C 0.51 7.96 7.69 -11.63 -0.09 7.87 16 10 O -0.52 -9.08 15.80 5.49 0.09 -9.00 16 11 C 0.50 8.67 7.53 -11.63 -0.09 8.58 16 12 O -0.50 -8.89 9.56 5.48 0.05 -8.84 16 13 N -0.63 -11.75 5.31 -10.34 -0.05 -11.81 16 14 C 0.14 3.08 6.27 -83.82 -0.53 2.56 16 15 C -0.22 -4.85 8.70 -39.08 -0.34 -5.19 16 16 C -0.10 -2.33 10.02 -39.69 -0.40 -2.73 16 17 C -0.15 -3.92 8.65 -38.83 -0.34 -4.25 16 18 C 0.12 3.17 5.53 -106.85 -0.59 2.58 16 19 C -0.47 -12.19 9.05 -37.74 -0.34 -12.53 16 20 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 21 C 0.07 1.85 5.24 -17.35 -0.09 1.76 16 22 N -0.80 -20.55 10.93 55.55 0.61 -19.94 16 23 Si 0.91 18.63 29.57 -169.99 -5.03 13.60 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 C -0.23 -5.57 9.71 -38.66 -0.38 -5.95 16 28 C 0.09 1.02 4.34 -3.85 -0.02 1.01 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.37 7.28 -51.93 -0.38 -0.01 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.36 7.20 -51.93 -0.37 -0.01 16 36 H 0.10 1.12 7.02 -51.92 -0.36 0.76 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.41 6.99 8.32 -40.82 -0.34 6.65 16 39 H 0.11 2.28 6.28 -52.48 -0.33 1.95 16 40 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 41 H 0.12 3.15 6.32 -52.49 -0.33 2.82 16 42 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 43 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 44 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 45 H 0.13 1.74 4.98 -53.00 -0.26 1.48 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -29.38 362.01 -8.44 -37.82 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.13 Total: 11.73 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.65 Total: -6.76 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.12 Total: -39.49 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.21 Total: -22.36 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.38 -8.44 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453690614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.329 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds