Wall clock time and date at job start Tue Mar 31 2020 17:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.43721 * 2 1 4 4 C 1.47690 * 109.43729 * 240.09280 * 2 1 3 5 5 O 1.42555 * 113.66378 * 179.17628 * 4 2 1 6 6 C 1.40525 * 113.54979 * 87.75287 * 5 4 2 7 7 C 1.54292 * 109.86897 * 264.71549 * 6 5 4 8 8 N 1.48179 * 110.69631 * 39.38008 * 7 6 5 9 9 C 1.34774 * 118.51088 * 221.23055 * 8 7 6 10 10 O 1.21358 * 120.00202 * 358.48133 * 9 8 7 11 11 C 1.49364 * 119.99890 * 178.48725 * 9 8 7 12 12 O 1.21374 * 119.99504 * 353.79245 * 11 9 8 13 13 N 1.34770 * 119.99925 * 173.79986 * 11 9 8 14 14 C 1.39740 * 119.99964 * 175.58247 * 13 11 9 15 15 C 1.39340 * 119.95709 * 35.93533 * 14 13 11 16 16 C 1.38475 * 120.42512 * 180.30689 * 15 14 13 17 17 C 1.37697 * 120.32708 * 359.72776 * 16 15 14 18 18 C 1.40747 * 119.89712 * 359.97438 * 17 16 15 19 19 C 1.41408 * 120.20340 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99701 * 209.93185 * 19 18 17 21 21 C 1.39929 * 120.00147 * 29.94682 * 19 18 17 22 22 N 1.30823 * 120.00027 * 10.99855 * 21 19 18 23 23 Si 1.86799 * 119.99603 * 191.00791 * 21 19 18 24 24 H 1.48495 * 109.47577 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46945 * 119.99863 * 23 21 19 26 26 H 1.48508 * 109.46660 * 239.99339 * 23 21 19 27 27 C 1.38311 * 119.95131 * 215.68711 * 14 13 11 28 28 C 1.44457 * 122.97525 * 41.50110 * 8 7 6 29 29 H 1.08995 * 109.47013 * 179.91514 * 1 2 3 30 30 H 1.09007 * 109.46814 * 299.91231 * 1 2 3 31 31 H 1.09000 * 109.47062 * 59.90929 * 1 2 3 32 32 H 1.08996 * 108.64528 * 58.08639 * 4 2 1 33 33 H 1.09004 * 108.63644 * 300.25478 * 4 2 1 34 34 H 1.09003 * 109.40913 * 144.58736 * 6 5 4 35 35 H 1.09006 * 109.33544 * 24.79388 * 6 5 4 36 36 H 1.09007 * 109.23179 * 279.06423 * 7 6 5 37 37 H 1.09002 * 109.23335 * 159.69714 * 7 6 5 38 38 H 0.96998 * 120.00226 * 355.57420 * 13 11 9 39 39 H 1.08003 * 119.78494 * 0.02562 * 15 14 13 40 40 H 1.07997 * 119.83407 * 179.74016 * 16 15 14 41 41 H 1.07998 * 120.04958 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00137 * 180.02562 * 22 21 19 43 43 H 1.07994 * 120.16363 * 359.96948 * 27 14 13 44 44 H 1.09004 * 109.49172 * 30.74730 * 28 8 7 45 45 H 1.09002 * 109.49201 * 150.83001 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0280 0.0000 4 6 2.0215 -0.6944 -1.2073 5 8 3.4430 -0.7305 -1.3077 6 6 4.0241 -1.8320 -0.6567 7 6 4.4678 -1.4270 0.7644 8 7 3.4698 -0.5265 1.3879 9 6 3.9119 0.5285 2.1007 10 8 5.1036 0.7080 2.2433 11 6 2.9350 1.4768 2.7151 12 8 1.7496 1.3636 2.4802 13 7 3.3699 2.4581 3.5301 14 6 2.4685 3.4010 4.0312 15 6 1.1711 3.0156 4.3629 16 6 0.2680 3.9433 4.8542 17 6 0.6443 5.2567 5.0257 18 6 1.9532 5.6596 4.7009 19 6 2.3464 7.0068 4.8740 20 1 3.0999 7.4363 4.2305 21 6 1.7595 7.7834 5.8792 22 7 1.0125 7.2166 6.7915 23 14 2.0423 9.6294 5.9183 24 1 2.9182 10.0202 4.7846 25 1 0.7393 10.3324 5.8028 26 1 2.6946 10.0032 7.1990 27 6 2.8668 4.7144 4.2020 28 6 2.0446 -0.7313 1.2712 29 1 -0.3633 -1.0276 -0.0015 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 1.6226 -0.1889 -2.0867 33 1 1.6466 -1.7179 -1.1973 34 1 4.8908 -2.1720 -1.2236 35 1 3.2943 -2.6392 -0.5920 36 1 5.4283 -0.9146 0.7084 37 1 4.5748 -2.3228 1.3762 38 1 4.3086 2.5098 3.7689 39 1 0.8667 1.9877 4.2316 40 1 -0.7363 3.6350 5.1043 41 1 -0.0638 5.9765 5.4089 42 1 0.6054 7.7549 7.4882 43 1 3.8734 5.0134 3.9495 44 1 1.8361 -1.7980 1.1878 45 1 1.5460 -0.3307 2.1538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453690614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:37 Heat of formation + Delta-G solvation = -89.187656 kcal Electronic energy + Delta-G solvation = -28884.757038 eV Core-core repulsion = 24867.173227 eV Total energy + Delta-G solvation = -4017.583812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.37406 -40.70630 -39.65058 -38.92405 -37.06613 -35.96794 -35.31590 -34.81946 -31.78543 -30.93919 -30.22356 -27.50217 -27.38667 -27.17091 -25.96150 -23.48751 -22.90719 -22.18008 -21.77549 -20.86445 -19.49655 -18.94773 -18.37117 -17.65019 -17.44598 -17.25327 -16.90415 -16.66198 -16.52767 -16.12130 -15.93274 -15.53102 -15.04558 -14.87233 -14.73204 -14.64562 -14.30320 -14.09104 -13.73501 -13.60890 -13.28236 -13.12331 -12.98302 -12.84099 -12.69934 -12.56240 -12.54009 -12.30776 -12.17642 -11.88295 -11.76511 -11.59902 -11.53611 -11.15923 -10.86690 -10.60853 -10.30747 -9.83303 -9.39070 -8.82890 -8.59418 -6.39471 0.12834 0.94928 0.99097 1.24175 1.40297 1.51069 1.54749 2.06388 2.22899 2.39008 2.76196 2.93342 3.20979 3.68491 3.70961 3.80030 3.93710 4.13185 4.22137 4.36049 4.38759 4.40586 4.57821 4.60310 4.66350 4.68593 4.80600 4.81636 4.85469 4.97874 5.00569 5.05744 5.08119 5.10784 5.26716 5.32004 5.37169 5.43747 5.67926 5.71228 5.87126 6.04595 6.07345 6.17839 6.34069 6.40877 6.62351 6.66048 6.86456 6.93643 7.00893 8.38135 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.002673 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.061837 B =10472.084561 C =10897.927349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 H 0.041 0.959 4 C 0.062 3.938 5 O -0.394 6.394 6 C 0.050 3.950 7 C 0.072 3.928 8 N -0.564 5.564 9 C 0.506 3.494 10 O -0.547 6.547 11 C 0.496 3.504 12 O -0.500 6.500 13 N -0.633 5.633 14 C 0.150 3.850 15 C -0.218 4.218 16 C -0.098 4.098 17 C -0.179 4.179 18 C 0.094 3.906 19 C -0.500 4.500 20 H 0.074 0.926 21 C 0.035 3.965 22 N -0.832 5.832 23 Si 0.984 3.016 24 H -0.260 1.260 25 H -0.264 1.264 26 H -0.266 1.266 27 C -0.248 4.248 28 C 0.086 3.914 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.419 0.581 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.287 0.713 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.922 -18.876 -12.028 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.146 4.146 3 H 0.059 0.941 4 C -0.014 4.014 5 O -0.312 6.312 6 C -0.028 4.028 7 C -0.048 4.048 8 N -0.295 5.295 9 C 0.288 3.712 10 O -0.425 6.425 11 C 0.279 3.721 12 O -0.376 6.376 13 N -0.278 5.278 14 C 0.057 3.943 15 C -0.239 4.239 16 C -0.117 4.117 17 C -0.199 4.199 18 C 0.092 3.908 19 C -0.530 4.530 20 H 0.092 0.908 21 C -0.179 4.179 22 N -0.458 5.458 23 Si 0.805 3.195 24 H -0.184 1.184 25 H -0.189 1.189 26 H -0.191 1.191 27 C -0.269 4.269 28 C -0.036 4.036 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.256 0.744 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.700 -18.768 -12.078 22.329 hybrid contribution 0.503 1.107 0.662 1.384 sum 1.203 -17.661 -11.415 21.063 Atomic orbital electron populations 1.21565 0.92127 1.03064 1.02216 1.21432 0.97942 0.99547 0.95679 0.94074 1.21787 0.80263 1.01701 0.97650 1.87497 1.21146 1.48476 1.74100 1.23099 1.00555 0.88668 0.90454 1.23122 0.91919 0.94075 0.95727 1.47729 1.08903 1.24831 1.48078 1.20005 0.87837 0.82697 0.80680 1.90720 1.16934 1.74053 1.60828 1.20381 0.89045 0.82738 0.79963 1.90628 1.16979 1.69934 1.60013 1.43127 1.12596 1.26579 1.45533 1.17483 0.90595 0.87748 0.98461 1.20622 0.93525 0.99688 1.10070 1.20871 0.98730 0.93269 0.98814 1.21373 0.96480 0.95736 1.06266 1.17723 0.90983 0.93194 0.88936 1.19779 1.21536 0.96129 1.15567 0.90760 1.26695 0.92581 1.05372 0.93280 1.69847 1.25707 1.39377 1.10911 0.85128 0.79195 0.76016 0.79159 1.18401 1.18888 1.19129 1.20951 0.99618 0.91249 1.15119 1.22674 0.77975 1.01932 1.00998 0.90182 0.93174 0.92020 0.89491 0.90117 0.86451 0.89640 0.90128 0.87805 0.74359 0.86201 0.86448 0.87689 0.90211 0.87882 0.87829 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.15 71.98 0.66 -1.70 16 2 C -0.13 -2.64 2.27 -11.62 -0.03 -2.67 16 3 H 0.04 1.21 7.69 -2.38 -0.02 1.19 16 4 C 0.06 1.02 5.26 70.32 0.37 1.39 16 5 O -0.39 -7.94 10.23 -144.91 -1.48 -9.43 16 6 C 0.05 0.63 6.50 72.42 0.47 1.10 16 7 C 0.07 1.25 6.54 86.49 0.57 1.81 16 8 N -0.56 -13.32 2.54 -816.82 -2.07 -15.40 16 9 C 0.51 15.70 7.69 87.24 0.67 16.37 16 10 O -0.55 -18.91 15.80 -3.27 -0.05 -18.97 16 11 C 0.50 17.36 7.53 87.24 0.66 18.02 16 12 O -0.50 -17.96 9.56 -3.32 -0.03 -17.99 16 13 N -0.63 -23.97 5.31 -304.98 -1.62 -25.59 16 14 C 0.15 6.75 6.27 38.16 0.24 6.99 16 15 C -0.22 -9.86 8.70 22.59 0.20 -9.66 16 16 C -0.10 -4.61 10.02 22.20 0.22 -4.38 16 17 C -0.18 -9.45 8.65 22.76 0.20 -9.26 16 18 C 0.09 5.14 5.53 -21.31 -0.12 5.03 16 19 C -0.50 -27.16 9.05 23.46 0.21 -26.95 16 20 H 0.07 3.92 7.87 -2.91 -0.02 3.90 16 21 C 0.03 1.75 5.24 85.25 0.45 2.20 16 22 N -0.83 -43.56 10.93 21.82 0.24 -43.32 16 23 Si 0.98 38.60 29.57 68.60 2.03 40.63 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 26 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 27 C -0.25 -12.32 9.71 22.86 0.22 -12.10 16 28 C 0.09 1.77 4.34 87.59 0.38 2.15 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 0.83 7.28 -2.38 -0.02 0.81 16 34 H 0.12 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.62 7.20 -2.38 -0.02 0.61 16 36 H 0.08 1.72 7.02 -2.38 -0.02 1.70 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.42 14.51 8.32 -92.71 -0.77 13.74 16 39 H 0.12 5.06 6.28 -2.91 -0.02 5.04 16 40 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.11 5.77 6.32 -2.91 -0.02 5.75 16 42 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 43 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 44 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 45 H 0.11 2.79 4.98 -19.37 -0.10 2.69 16 Total: -1.00 -66.23 362.01 2.55 -63.68 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: 0.17 Total: 38.05 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.36 Total: -11.66 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -3.45 Total: -84.31 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.57 Total: -46.38 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -66.23 2.55 -63.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453690614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.503 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds