Wall clock time and date at job start Tue Mar 31 2020 17:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.68016 * 2 1 4 4 C 1.53297 * 109.71066 * 239.45718 * 2 1 3 5 5 O 1.42956 * 109.22235 * 187.95660 * 4 2 1 6 6 C 1.42960 * 114.16644 * 62.58359 * 5 4 2 7 7 H 1.08999 * 109.51106 * 57.34661 * 6 5 4 8 8 C 1.53001 * 109.51160 * 177.44446 * 6 5 4 9 9 C 1.53707 * 109.14715 * 297.28763 * 6 5 4 10 10 N 1.47145 * 108.16212 * 52.53896 * 9 6 5 11 11 C 1.34784 * 120.98453 * 129.42903 * 10 9 6 12 12 O 1.21355 * 120.00162 * 177.72209 * 11 10 9 13 13 C 1.49356 * 119.99971 * 358.00076 * 11 10 9 14 14 O 1.21381 * 119.99631 * 5.88061 * 13 11 10 15 15 N 1.34770 * 120.00294 * 185.87998 * 13 11 10 16 16 C 1.39737 * 120.00086 * 174.34329 * 15 13 11 17 17 C 1.39346 * 119.95275 * 329.24449 * 16 15 13 18 18 C 1.38473 * 120.42098 * 179.76453 * 17 16 15 19 19 C 1.37699 * 120.33106 * 0.51496 * 18 17 16 20 20 C 1.40751 * 119.89180 * 359.74392 * 19 18 17 21 21 C 1.41415 * 120.20414 * 180.02562 * 20 19 18 22 22 H 1.07994 * 119.99869 * 212.66744 * 21 20 19 23 23 C 1.39932 * 119.99890 * 32.66828 * 21 20 19 24 24 N 1.30829 * 120.00361 * 6.76149 * 23 21 20 25 25 Si 1.86797 * 119.99737 * 186.76525 * 23 21 20 26 26 H 1.48497 * 109.47170 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47257 * 120.00031 * 25 23 21 28 28 H 1.48501 * 109.47098 * 239.99871 * 25 23 21 29 29 C 1.38302 * 119.95368 * 149.52134 * 16 15 13 30 30 H 1.09005 * 109.46575 * 308.64688 * 1 2 3 31 31 H 1.08998 * 109.47073 * 68.64680 * 1 2 3 32 32 H 1.09001 * 109.46905 * 188.65367 * 1 2 3 33 33 H 1.08993 * 109.51321 * 307.88312 * 4 2 1 34 34 H 1.09007 * 109.50555 * 67.98619 * 4 2 1 35 35 H 1.09002 * 109.47132 * 60.00167 * 8 6 5 36 36 H 1.09003 * 109.47349 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.47158 * 300.00143 * 8 6 5 38 38 H 1.09004 * 109.84243 * 292.85201 * 9 6 5 39 39 H 1.09005 * 109.74504 * 172.16436 * 9 6 5 40 40 H 0.96999 * 119.99615 * 354.34140 * 15 13 11 41 41 H 1.07997 * 119.78969 * 359.97438 * 17 16 15 42 42 H 1.07999 * 119.83675 * 180.25642 * 18 17 16 43 43 H 1.07990 * 120.05328 * 179.72057 * 19 18 17 44 44 H 0.96994 * 120.00082 * 179.97438 * 24 23 21 45 45 H 1.08005 * 120.16279 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0471 -0.7334 -1.2429 5 8 3.4644 -0.8903 -1.1412 6 6 3.8868 -1.6884 -0.0329 7 1 3.4225 -2.6725 -0.0949 8 6 5.4091 -1.8388 -0.0623 9 6 3.4649 -0.9990 1.2746 10 7 2.0257 -0.7036 1.1936 11 6 1.1870 -1.0619 2.1860 12 8 0.0102 -0.7730 2.1199 13 6 1.7070 -1.8091 3.3700 14 8 2.8995 -2.0005 3.4909 15 7 0.8523 -2.2708 4.3042 16 6 1.3240 -3.0702 5.3488 17 6 2.4208 -3.9052 5.1451 18 6 2.8994 -4.6978 6.1749 19 6 2.2895 -4.6772 7.4093 20 6 1.1774 -3.8428 7.6283 21 6 0.5463 -3.8160 8.8936 22 1 -0.5180 -3.6468 8.9627 23 6 1.3011 -4.0088 10.0561 24 7 2.6054 -4.0816 9.9847 25 14 0.4462 -4.1624 11.7098 26 1 -1.0221 -4.0462 11.5207 27 1 0.7654 -5.4820 12.3115 28 1 0.9157 -3.0804 12.6121 29 6 0.6982 -3.0357 6.5816 30 1 -0.3633 0.6418 0.8027 31 1 -0.3633 0.3742 -0.9571 32 1 -0.3633 -1.0160 0.1546 33 1 1.5760 -1.7140 -1.3093 34 1 1.8073 -0.1531 -2.1340 35 1 5.8728 -0.8544 0.0016 36 1 5.7305 -2.4477 0.7828 37 1 5.7086 -2.3219 -0.9924 38 1 4.0236 -0.0715 1.4008 39 1 3.6569 -1.6614 2.1187 40 1 -0.0903 -2.0482 4.2514 41 1 2.9028 -3.9319 4.1791 42 1 3.7526 -5.3384 6.0078 43 1 2.6637 -5.3005 8.2078 44 1 3.1285 -4.2149 10.7905 45 1 -0.1551 -2.3925 6.7392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453704168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:43 Heat of formation + Delta-G solvation = -58.185646 kcal Electronic energy + Delta-G solvation = -28659.596043 eV Core-core repulsion = 24643.356580 eV Total energy + Delta-G solvation = -4016.239464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.29614 -39.61497 -38.44916 -37.36274 -35.42486 -34.48997 -33.65450 -33.10285 -30.86875 -29.91859 -28.63691 -26.89023 -26.02826 -25.35961 -24.70371 -22.60485 -21.55868 -21.20624 -20.49274 -19.54807 -17.85546 -17.61269 -16.81336 -16.69198 -16.18743 -15.83631 -15.61350 -15.35718 -15.05951 -14.84673 -14.74223 -14.37417 -14.10599 -13.46172 -13.24161 -13.03946 -12.98162 -12.93914 -12.47783 -12.38706 -12.15894 -12.10923 -11.88767 -11.83202 -11.29715 -11.27912 -11.20965 -11.12685 -11.02923 -10.54533 -10.39904 -10.37450 -10.08645 -9.66655 -9.46407 -9.16599 -8.78991 -8.67655 -7.52114 -7.05504 -6.70850 -4.45440 1.36338 2.24024 2.72899 2.76254 3.07076 3.11621 3.14011 3.39716 3.42021 3.55662 3.93330 4.34677 4.46123 4.60168 4.63951 4.76661 4.79831 4.88613 5.00990 5.26397 5.31386 5.38176 5.51116 5.55245 5.56731 5.67825 5.81805 5.85835 5.93733 5.99528 6.15146 6.29899 6.40763 6.58396 6.72611 6.81848 6.89792 6.95306 6.97640 7.19272 7.39936 7.43598 7.64781 7.85217 7.96388 7.97709 8.15708 8.29953 8.56481 8.84490 8.86397 10.23168 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.002601 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.666060 B =10762.863068 C =11664.516705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.104 3.896 3 H 0.084 0.916 4 C 0.054 3.946 5 O -0.381 6.381 6 C 0.074 3.926 7 H 0.062 0.938 8 C -0.142 4.142 9 C 0.023 3.977 10 N -0.583 5.583 11 C 0.513 3.487 12 O -0.516 6.516 13 C 0.499 3.501 14 O -0.496 6.496 15 N -0.624 5.624 16 C 0.138 3.862 17 C -0.219 4.219 18 C -0.098 4.098 19 C -0.151 4.151 20 C 0.122 3.878 21 C -0.467 4.467 22 H 0.078 0.922 23 C 0.073 3.927 24 N -0.806 5.806 25 Si 0.912 3.088 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.275 1.275 29 C -0.229 4.229 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.168 0.832 40 H 0.413 0.587 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.279 0.721 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 4.912 -17.423 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.002 3.998 3 H 0.101 0.899 4 C -0.023 4.023 5 O -0.300 6.300 6 C 0.016 3.984 7 H 0.080 0.920 8 C -0.200 4.200 9 C -0.098 4.098 10 N -0.318 5.318 11 C 0.296 3.704 12 O -0.392 6.392 13 C 0.281 3.719 14 O -0.374 6.374 15 N -0.268 5.268 16 C 0.046 3.954 17 C -0.240 4.240 18 C -0.117 4.117 19 C -0.171 4.171 20 C 0.119 3.881 21 C -0.497 4.497 22 H 0.096 0.904 23 C -0.143 4.143 24 N -0.432 5.432 25 Si 0.737 3.263 26 H -0.185 1.185 27 H -0.198 1.198 28 H -0.200 1.200 29 C -0.251 4.251 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.184 0.816 40 H 0.250 0.750 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.139 0.861 44 H 0.090 0.910 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.182 4.997 -17.372 18.114 hybrid contribution -0.845 0.205 0.857 1.221 sum 0.337 5.202 -16.514 17.318 Atomic orbital electron populations 1.22148 0.91691 1.04381 1.01520 1.22139 0.96754 0.96326 0.84615 0.89857 1.23039 0.81806 1.00200 0.97280 1.87941 1.21433 1.72159 1.48453 1.22640 0.96598 0.93659 0.85543 0.91959 1.21713 0.92187 1.03046 1.03018 1.24148 0.78685 1.04257 1.02707 1.48047 1.09145 1.56270 1.18337 1.20173 0.86025 0.80423 0.83778 1.90789 1.16163 1.54184 1.78072 1.20108 0.86735 0.80731 0.84322 1.90321 1.14920 1.57249 1.74867 1.43193 1.11830 1.47721 1.24035 1.17495 0.97972 0.93402 0.86486 1.20379 1.01031 1.03015 0.99558 1.20618 0.98676 0.98717 0.93738 1.21469 0.99175 1.00918 0.95551 1.17401 0.91089 0.87997 0.91604 1.19526 0.95874 1.44222 0.90107 0.90427 1.25856 0.94708 0.92400 1.01333 1.69779 1.05838 1.36733 1.30878 0.86193 0.80523 0.78533 0.81024 1.18547 1.19836 1.20030 1.20840 1.05788 1.06008 0.92442 0.90057 0.93019 0.91208 0.92593 0.87609 0.91600 0.90227 0.91607 0.90670 0.81570 0.75019 0.87663 0.88704 0.86100 0.91008 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 7.64 37.16 0.28 -1.17 16 2 C 0.10 1.10 3.68 -67.42 -0.25 0.86 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.05 0.51 6.28 37.31 0.23 0.74 16 5 O -0.38 -4.24 10.38 -35.23 -0.37 -4.60 16 6 C 0.07 0.79 3.41 -26.36 -0.09 0.70 16 7 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 8 C -0.14 -1.26 9.57 37.16 0.36 -0.91 16 9 C 0.02 0.28 5.72 -3.32 -0.02 0.26 16 10 N -0.58 -7.50 3.01 -165.03 -0.50 -7.99 16 11 C 0.51 7.63 7.59 -11.63 -0.09 7.55 16 12 O -0.52 -7.95 12.16 5.49 0.07 -7.88 16 13 C 0.50 8.50 7.56 -11.63 -0.09 8.41 16 14 O -0.50 -9.12 10.55 5.47 0.06 -9.06 16 15 N -0.62 -11.21 5.33 -10.34 -0.06 -11.26 16 16 C 0.14 2.99 6.31 -83.82 -0.53 2.46 16 17 C -0.22 -4.85 8.67 -39.08 -0.34 -5.19 16 18 C -0.10 -2.25 10.01 -39.69 -0.40 -2.65 16 19 C -0.15 -3.81 8.63 -38.83 -0.34 -4.15 16 20 C 0.12 3.14 5.52 -106.85 -0.59 2.55 16 21 C -0.47 -12.03 9.05 -37.74 -0.34 -12.37 16 22 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 23 C 0.07 1.81 5.30 -17.34 -0.09 1.71 16 24 N -0.81 -20.60 10.91 55.55 0.61 -20.00 16 25 Si 0.91 18.48 29.56 -169.99 -5.03 13.46 16 26 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 27 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 28 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 29 C -0.23 -5.37 9.69 -38.67 -0.37 -5.74 16 30 H 0.08 0.98 6.74 -51.93 -0.35 0.63 16 31 H 0.05 0.41 8.13 -51.93 -0.42 -0.02 16 32 H 0.07 0.83 6.85 -51.93 -0.36 0.47 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.17 2.35 3.93 -56.48 -0.22 2.12 16 40 H 0.41 6.54 8.28 -40.82 -0.34 6.20 16 41 H 0.11 2.22 6.21 -52.49 -0.33 1.89 16 42 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.12 3.14 6.38 -52.49 -0.33 2.81 16 44 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 45 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -28.19 361.79 -8.54 -36.73 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.12 Total: 12.10 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.66 Total: -6.94 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.05 Total: -39.26 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.24 Total: -21.55 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.19 -8.54 -36.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453704168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.452 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds