Wall clock time and date at job start Tue Mar 31 2020 17:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.68016 * 2 1 4 4 C 1.53297 * 109.71066 * 239.45718 * 2 1 3 5 5 O 1.42956 * 109.22235 * 187.95660 * 4 2 1 6 6 C 1.42960 * 114.16644 * 62.58359 * 5 4 2 7 7 H 1.08999 * 109.51106 * 57.34661 * 6 5 4 8 8 C 1.53001 * 109.51160 * 177.44446 * 6 5 4 9 9 C 1.53707 * 109.14715 * 297.28763 * 6 5 4 10 10 N 1.47145 * 108.16212 * 52.53896 * 9 6 5 11 11 C 1.34784 * 120.98453 * 129.42903 * 10 9 6 12 12 O 1.21355 * 120.00162 * 177.72209 * 11 10 9 13 13 C 1.49356 * 119.99971 * 358.00076 * 11 10 9 14 14 O 1.21381 * 119.99631 * 5.88061 * 13 11 10 15 15 N 1.34770 * 120.00294 * 185.87998 * 13 11 10 16 16 C 1.39737 * 120.00086 * 174.34329 * 15 13 11 17 17 C 1.39346 * 119.95275 * 329.24449 * 16 15 13 18 18 C 1.38473 * 120.42098 * 179.76453 * 17 16 15 19 19 C 1.37699 * 120.33106 * 0.51496 * 18 17 16 20 20 C 1.40751 * 119.89180 * 359.74392 * 19 18 17 21 21 C 1.41415 * 120.20414 * 180.02562 * 20 19 18 22 22 H 1.07994 * 119.99869 * 212.66744 * 21 20 19 23 23 C 1.39932 * 119.99890 * 32.66828 * 21 20 19 24 24 N 1.30829 * 120.00361 * 6.76149 * 23 21 20 25 25 Si 1.86797 * 119.99737 * 186.76525 * 23 21 20 26 26 H 1.48497 * 109.47170 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47257 * 120.00031 * 25 23 21 28 28 H 1.48501 * 109.47098 * 239.99871 * 25 23 21 29 29 C 1.38302 * 119.95368 * 149.52134 * 16 15 13 30 30 H 1.09005 * 109.46575 * 308.64688 * 1 2 3 31 31 H 1.08998 * 109.47073 * 68.64680 * 1 2 3 32 32 H 1.09001 * 109.46905 * 188.65367 * 1 2 3 33 33 H 1.08993 * 109.51321 * 307.88312 * 4 2 1 34 34 H 1.09007 * 109.50555 * 67.98619 * 4 2 1 35 35 H 1.09002 * 109.47132 * 60.00167 * 8 6 5 36 36 H 1.09003 * 109.47349 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.47158 * 300.00143 * 8 6 5 38 38 H 1.09004 * 109.84243 * 292.85201 * 9 6 5 39 39 H 1.09005 * 109.74504 * 172.16436 * 9 6 5 40 40 H 0.96999 * 119.99615 * 354.34140 * 15 13 11 41 41 H 1.07997 * 119.78969 * 359.97438 * 17 16 15 42 42 H 1.07999 * 119.83675 * 180.25642 * 18 17 16 43 43 H 1.07990 * 120.05328 * 179.72057 * 19 18 17 44 44 H 0.96994 * 120.00082 * 179.97438 * 24 23 21 45 45 H 1.08005 * 120.16279 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0471 -0.7334 -1.2429 5 8 3.4644 -0.8903 -1.1412 6 6 3.8868 -1.6884 -0.0329 7 1 3.4225 -2.6725 -0.0949 8 6 5.4091 -1.8388 -0.0623 9 6 3.4649 -0.9990 1.2746 10 7 2.0257 -0.7036 1.1936 11 6 1.1870 -1.0619 2.1860 12 8 0.0102 -0.7730 2.1199 13 6 1.7070 -1.8091 3.3700 14 8 2.8995 -2.0005 3.4909 15 7 0.8523 -2.2708 4.3042 16 6 1.3240 -3.0702 5.3488 17 6 2.4208 -3.9052 5.1451 18 6 2.8994 -4.6978 6.1749 19 6 2.2895 -4.6772 7.4093 20 6 1.1774 -3.8428 7.6283 21 6 0.5463 -3.8160 8.8936 22 1 -0.5180 -3.6468 8.9627 23 6 1.3011 -4.0088 10.0561 24 7 2.6054 -4.0816 9.9847 25 14 0.4462 -4.1624 11.7098 26 1 -1.0221 -4.0462 11.5207 27 1 0.7654 -5.4820 12.3115 28 1 0.9157 -3.0804 12.6121 29 6 0.6982 -3.0357 6.5816 30 1 -0.3633 0.6418 0.8027 31 1 -0.3633 0.3742 -0.9571 32 1 -0.3633 -1.0160 0.1546 33 1 1.5760 -1.7140 -1.3093 34 1 1.8073 -0.1531 -2.1340 35 1 5.8728 -0.8544 0.0016 36 1 5.7305 -2.4477 0.7828 37 1 5.7086 -2.3219 -0.9924 38 1 4.0236 -0.0715 1.4008 39 1 3.6569 -1.6614 2.1187 40 1 -0.0903 -2.0482 4.2514 41 1 2.9028 -3.9319 4.1791 42 1 3.7526 -5.3384 6.0078 43 1 2.6637 -5.3005 8.2078 44 1 3.1285 -4.2149 10.7905 45 1 -0.1551 -2.3925 6.7392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453704168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:42 Heat of formation + Delta-G solvation = -75.066507 kcal Electronic energy + Delta-G solvation = -28660.328052 eV Core-core repulsion = 24643.356580 eV Total energy + Delta-G solvation = -4016.971473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.49373 -40.87943 -39.55536 -39.02446 -36.71038 -35.84026 -34.87312 -34.52137 -31.80740 -31.73052 -30.32359 -27.84925 -27.23499 -26.86739 -25.92714 -23.76473 -22.94757 -22.60320 -21.93126 -20.87510 -19.48188 -18.92255 -17.85330 -17.67941 -17.46946 -17.26057 -17.06579 -16.66375 -16.44906 -16.26422 -15.79924 -15.62528 -15.32739 -14.94231 -14.68845 -14.38148 -14.14375 -14.07183 -13.89306 -13.62810 -13.27937 -13.11324 -12.99406 -12.90946 -12.89916 -12.83946 -12.65984 -12.25261 -12.09050 -11.98805 -11.85415 -11.52334 -11.42926 -11.27879 -11.22651 -10.91092 -9.98597 -9.71991 -9.38411 -8.83930 -8.54701 -6.39924 0.03238 0.94347 0.96275 1.14948 1.41115 1.50552 1.55484 2.01718 2.22100 2.27340 2.70020 2.78278 3.11035 3.55932 3.66147 3.76466 3.94342 3.96392 4.02762 4.20382 4.37113 4.44221 4.50347 4.57896 4.63751 4.71821 4.73958 4.86592 4.95098 4.97288 4.99434 5.02115 5.04129 5.09830 5.16029 5.27401 5.32531 5.43113 5.67246 5.70117 5.87007 6.01795 6.07680 6.09837 6.14359 6.38251 6.59996 6.65238 6.83241 6.94162 6.99856 8.40889 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.002601 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.666060 B =10762.863068 C =11664.516705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.101 3.899 3 H 0.094 0.906 4 C 0.055 3.945 5 O -0.388 6.388 6 C 0.077 3.923 7 H 0.058 0.942 8 C -0.139 4.139 9 C 0.023 3.977 10 N -0.579 5.579 11 C 0.517 3.483 12 O -0.523 6.523 13 C 0.498 3.502 14 O -0.509 6.509 15 N -0.625 5.625 16 C 0.148 3.852 17 C -0.222 4.222 18 C -0.097 4.097 19 C -0.177 4.177 20 C 0.095 3.905 21 C -0.499 4.499 22 H 0.078 0.922 23 C 0.031 3.969 24 N -0.838 5.838 25 Si 0.986 3.014 26 H -0.258 1.258 27 H -0.265 1.265 28 H -0.270 1.270 29 C -0.241 4.241 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.136 0.864 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.423 0.577 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.286 0.714 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 5.769 -19.111 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.001 4.001 3 H 0.112 0.888 4 C -0.022 4.022 5 O -0.307 6.307 6 C 0.018 3.982 7 H 0.076 0.924 8 C -0.197 4.197 9 C -0.098 4.098 10 N -0.312 5.312 11 C 0.299 3.701 12 O -0.400 6.400 13 C 0.282 3.718 14 O -0.387 6.387 15 N -0.270 5.270 16 C 0.056 3.944 17 C -0.243 4.243 18 C -0.116 4.116 19 C -0.197 4.197 20 C 0.092 3.908 21 C -0.530 4.530 22 H 0.096 0.904 23 C -0.182 4.182 24 N -0.465 5.465 25 Si 0.807 3.193 26 H -0.181 1.181 27 H -0.190 1.190 28 H -0.195 1.195 29 C -0.263 4.263 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.167 0.833 40 H 0.261 0.739 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.123 0.877 44 H 0.096 0.904 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.078 5.872 -19.115 20.025 hybrid contribution -0.759 0.004 1.193 1.414 sum 0.319 5.876 -17.921 18.863 Atomic orbital electron populations 1.22033 0.91420 1.03051 1.02542 1.22398 0.96982 0.96784 0.83936 0.88776 1.23200 0.80885 1.00569 0.97589 1.87944 1.22444 1.72090 1.48228 1.22627 0.97703 0.93139 0.84689 0.92376 1.21716 0.90848 1.03457 1.03660 1.24082 0.78362 1.04278 1.03046 1.48168 1.09221 1.55476 1.18362 1.19713 0.86109 0.80688 0.83575 1.90808 1.16354 1.54703 1.78154 1.20624 0.86421 0.80229 0.84534 1.90354 1.15537 1.57506 1.75287 1.43117 1.12625 1.47681 1.23528 1.17495 0.97149 0.92961 0.86835 1.20589 1.01169 1.02711 0.99851 1.20868 0.98954 0.98744 0.93050 1.21401 1.00230 1.01897 0.96170 1.17745 0.91801 0.88741 0.92526 1.19790 0.96153 1.45949 0.91065 0.90420 1.26714 0.95237 0.91453 1.04767 1.69851 1.07175 1.37258 1.32223 0.85100 0.79353 0.78748 0.76127 1.18140 1.18993 1.19463 1.20968 1.06378 1.06146 0.92794 0.91859 0.89924 0.92859 0.92634 0.84595 0.91241 0.89946 0.90684 0.90047 0.83293 0.73854 0.86392 0.86456 0.87720 0.90378 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.64 71.98 0.55 -1.92 16 2 C 0.10 1.88 3.68 44.97 0.17 2.04 16 3 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.05 0.85 6.28 72.08 0.45 1.31 16 5 O -0.39 -7.59 10.38 -148.98 -1.55 -9.13 16 6 C 0.08 1.51 3.41 30.83 0.11 1.61 16 7 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 8 C -0.14 -2.21 9.57 71.98 0.69 -1.53 16 9 C 0.02 0.53 5.72 86.49 0.49 1.03 16 10 N -0.58 -13.96 3.01 -794.39 -2.39 -16.36 16 11 C 0.52 14.87 7.59 87.24 0.66 15.53 16 12 O -0.52 -15.62 12.16 -3.26 -0.04 -15.66 16 13 C 0.50 16.69 7.56 87.24 0.66 17.35 16 14 O -0.51 -18.43 10.55 -3.34 -0.04 -18.46 16 15 N -0.62 -22.19 5.33 -304.98 -1.63 -23.82 16 16 C 0.15 6.44 6.31 38.16 0.24 6.68 16 17 C -0.22 -9.82 8.67 22.59 0.20 -9.62 16 18 C -0.10 -4.50 10.01 22.20 0.22 -4.27 16 19 C -0.18 -9.21 8.63 22.76 0.20 -9.01 16 20 C 0.09 5.02 5.52 -21.31 -0.12 4.91 16 21 C -0.50 -26.47 9.05 23.46 0.21 -26.26 16 22 H 0.08 3.95 7.85 -2.91 -0.02 3.93 16 23 C 0.03 1.57 5.30 85.25 0.45 2.02 16 24 N -0.84 -43.89 10.91 21.82 0.24 -43.65 16 25 Si 0.99 38.18 29.56 68.60 2.03 40.20 16 26 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 27 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 28 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 29 C -0.24 -11.51 9.69 22.86 0.22 -11.29 16 30 H 0.06 1.42 6.74 -2.38 -0.02 1.40 16 31 H 0.08 1.02 8.13 -2.39 -0.02 1.00 16 32 H 0.05 1.18 6.85 -2.39 -0.02 1.16 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.14 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.15 4.08 3.93 -74.52 -0.29 3.79 16 40 H 0.42 13.23 8.28 -92.71 -0.77 12.46 16 41 H 0.12 4.88 6.21 -2.91 -0.02 4.86 16 42 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 43 H 0.10 5.69 6.38 -2.92 -0.02 5.67 16 44 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 45 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -61.26 361.79 2.00 -59.26 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -0.02 Total: 39.04 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 5.40 Total: -11.42 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.78 Total: -83.83 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.62 Total: -43.26 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.20 kcal Total: -61.26 2.00 -59.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453704168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.805 kcal (2) G-P(sol) polarization free energy of solvation -61.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds