Wall clock time and date at job start Tue Mar 31 2020 17:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.51196 * 2 1 4 4 C 1.52877 * 109.62302 * 240.00769 * 2 1 3 5 5 N 1.47151 * 108.60544 * 187.89918 * 4 2 1 6 6 C 1.34777 * 120.98243 * 230.50299 * 5 4 2 7 7 O 1.21357 * 120.00116 * 185.81933 * 6 5 4 8 8 C 1.49353 * 119.99721 * 5.81760 * 6 5 4 9 9 O 1.21371 * 120.00741 * 5.68944 * 8 6 5 10 10 N 1.34786 * 120.00132 * 185.68539 * 8 6 5 11 11 C 1.39740 * 120.00110 * 175.49519 * 10 8 6 12 12 C 1.39346 * 119.94967 * 215.40091 * 11 10 8 13 13 C 1.38471 * 120.42329 * 179.97438 * 12 11 10 14 14 C 1.37699 * 120.32456 * 0.02562 * 13 12 11 15 15 C 1.40741 * 119.89946 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.21183 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99740 * 332.60655 * 16 15 14 18 18 C 1.39932 * 120.00608 * 152.88561 * 16 15 14 19 19 N 1.30829 * 119.99536 * 352.16088 * 18 16 15 20 20 Si 1.86794 * 120.00131 * 172.16405 * 18 16 15 21 21 H 1.48503 * 109.47238 * 60.00024 * 20 18 16 22 22 H 1.48502 * 109.46949 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47068 * 299.99599 * 20 18 16 24 24 C 1.38295 * 119.95350 * 35.70336 * 11 10 8 25 25 C 1.47155 * 118.03979 * 50.22488 * 5 4 2 26 26 H 1.09004 * 109.67318 * 69.43641 * 25 5 4 27 27 C 1.52997 * 109.68457 * 189.95428 * 25 5 4 28 28 C 1.53295 * 108.38465 * 309.71834 * 25 5 4 29 29 O 1.42964 * 109.22191 * 52.29807 * 28 25 5 30 30 H 1.09003 * 109.47457 * 299.89991 * 1 2 3 31 31 H 1.09001 * 109.47315 * 59.89569 * 1 2 3 32 32 H 1.08998 * 109.47474 * 179.89682 * 1 2 3 33 33 H 1.09004 * 109.61865 * 68.08308 * 4 2 1 34 34 H 1.09000 * 109.52450 * 307.66579 * 4 2 1 35 35 H 0.97002 * 119.99547 * 355.49658 * 10 8 6 36 36 H 1.08003 * 119.78847 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.83942 * 180.02562 * 13 12 11 38 38 H 1.07999 * 120.05049 * 180.02562 * 14 13 12 39 39 H 0.97000 * 119.99953 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.16819 * 359.97438 * 24 11 10 41 41 H 1.08994 * 109.47196 * 52.53022 * 27 25 5 42 42 H 1.08997 * 109.46867 * 172.53006 * 27 25 5 43 43 H 1.09004 * 109.46953 * 292.52918 * 27 25 5 44 44 H 1.08995 * 109.51366 * 172.21650 * 28 25 5 45 45 H 1.08996 * 109.51562 * 292.37740 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0434 -0.7198 -1.2472 5 7 3.5022 -0.8750 -1.1326 6 6 4.3206 -0.5017 -2.1363 7 8 5.5098 -0.7337 -2.0677 8 6 3.7639 0.1975 -3.3328 9 8 2.5945 0.5218 -3.3569 10 7 4.5600 0.4686 -4.3861 11 6 4.0195 1.0373 -5.5425 12 6 4.5191 0.6788 -6.7929 13 6 3.9905 1.2358 -7.9452 14 6 2.9648 2.1513 -7.8676 15 6 2.4506 2.5240 -6.6116 16 6 1.3978 3.4639 -6.5241 17 1 1.2740 4.2094 -7.2957 18 6 0.5197 3.4319 -5.4350 19 7 0.5751 2.4440 -4.5791 20 14 -0.7314 4.7995 -5.2034 21 1 -1.6282 4.8554 -6.3857 22 1 -1.5363 4.5327 -3.9843 23 1 -0.0246 6.0972 -5.0563 24 6 2.9939 1.9597 -5.4439 25 6 4.0416 -1.4440 0.1127 26 1 3.7772 -2.4994 0.1787 27 6 5.5639 -1.2919 0.1318 28 6 3.4312 -0.6839 1.2958 29 8 2.0075 -0.6758 1.1658 30 1 -0.3634 0.5123 0.8909 31 1 -0.3634 0.5154 -0.8890 32 1 -0.3634 -1.0276 -0.0019 33 1 1.8053 -0.1315 -2.1334 34 1 1.5744 -1.7011 -1.3204 35 1 5.5082 0.2688 -4.3413 36 1 5.3232 -0.0388 -6.8639 37 1 4.3845 0.9509 -8.9094 38 1 2.5555 2.5827 -8.7691 39 1 -0.0332 2.4220 -3.8239 40 1 2.6089 2.2418 -4.4750 41 1 5.8275 -0.2515 -0.0580 42 1 5.9468 -1.5916 1.1073 43 1 6.0019 -1.9244 -0.6405 44 1 3.7089 -1.1767 2.2274 45 1 3.8021 0.3410 1.3005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453704170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:48 Heat of formation + Delta-G solvation = -53.756123 kcal Electronic energy + Delta-G solvation = -29631.858958 eV Core-core repulsion = 25615.811573 eV Total energy + Delta-G solvation = -4016.047385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.07910 -39.38611 -38.26990 -37.18260 -35.22717 -34.30396 -33.53511 -33.13386 -30.69006 -29.58932 -28.58980 -26.72739 -25.87081 -25.32565 -24.53663 -22.46254 -21.42785 -21.08328 -20.17904 -19.35496 -17.88768 -17.21081 -16.65816 -16.60399 -16.04560 -15.67664 -15.31957 -15.13223 -14.87346 -14.80938 -14.61931 -14.40073 -13.77879 -13.35677 -13.08271 -12.91329 -12.80254 -12.72466 -12.35127 -12.22180 -12.07558 -11.94309 -11.71076 -11.64624 -11.22142 -11.12092 -11.09255 -10.91260 -10.78030 -10.58818 -10.27914 -10.21713 -9.83104 -9.79364 -9.31126 -9.14067 -8.59424 -8.37454 -7.38426 -7.07486 -6.55747 -4.36684 1.61950 2.42958 2.75795 2.96880 3.08268 3.11123 3.19587 3.57176 3.62409 3.75463 3.96288 4.53486 4.65518 4.68638 4.78185 4.94354 4.96170 5.10328 5.19234 5.41029 5.46145 5.55249 5.64899 5.68019 5.78473 5.88572 5.98280 6.06435 6.10654 6.17246 6.20633 6.39204 6.44615 6.67764 6.88042 6.93219 7.06314 7.10413 7.17325 7.28954 7.45248 7.69199 7.80920 7.85473 8.04961 8.15537 8.32496 8.45405 8.71508 8.91893 8.94249 10.27100 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.004551 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.971407 B = 6151.593740 C = 8273.831183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 H 0.063 0.937 4 C 0.018 3.982 5 N -0.583 5.583 6 C 0.514 3.486 7 O -0.522 6.522 8 C 0.486 3.514 9 O -0.454 6.454 10 N -0.632 5.632 11 C 0.128 3.872 12 C -0.257 4.257 13 C -0.082 4.082 14 C -0.232 4.232 15 C 0.115 3.885 16 C -0.460 4.460 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.770 5.770 20 Si 0.907 3.093 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.151 4.151 25 C 0.105 3.895 26 H 0.082 0.918 27 C -0.142 4.142 28 C 0.055 3.945 29 O -0.383 6.383 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.177 0.823 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.279 0.721 40 H 0.151 0.849 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -5.749 10.867 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.081 0.919 4 C -0.103 4.103 5 N -0.317 5.317 6 C 0.297 3.703 7 O -0.399 6.399 8 C 0.267 3.733 9 O -0.328 6.328 10 N -0.277 5.277 11 C 0.036 3.964 12 C -0.278 4.278 13 C -0.101 4.101 14 C -0.252 4.252 15 C 0.112 3.888 16 C -0.490 4.490 17 H 0.094 0.906 18 C -0.149 4.149 19 N -0.395 5.395 20 Si 0.732 3.268 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.191 1.191 24 C -0.172 4.172 25 C 0.002 3.998 26 H 0.100 0.900 27 C -0.199 4.199 28 C -0.023 4.023 29 O -0.302 6.302 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.193 0.807 34 H 0.088 0.912 35 H 0.244 0.756 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.168 0.832 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.783 -5.852 11.272 13.002 hybrid contribution 0.042 0.357 0.083 0.369 sum 2.825 -5.495 11.354 12.927 Atomic orbital electron populations 1.21704 0.91982 1.03011 1.03158 1.22414 0.95804 0.95426 0.84393 0.91910 1.24068 0.77738 1.03880 1.04609 1.48033 1.07994 1.60711 1.15005 1.20316 0.86253 0.79583 0.84109 1.90741 1.15480 1.54595 1.79113 1.20155 0.87066 0.81673 0.84361 1.90497 1.15074 1.49619 1.77586 1.43048 1.11791 1.59637 1.13248 1.17679 0.98407 0.96794 0.83479 1.20073 1.07509 1.08965 0.91275 1.20300 0.96755 0.97409 0.95655 1.21063 1.02864 1.04322 0.96912 1.17516 0.90541 0.90628 0.90115 1.19510 1.09845 1.13663 1.05973 0.90605 1.25936 0.98167 0.95883 0.94929 1.69851 1.32415 1.26740 1.10447 0.86392 0.80304 0.81701 0.78423 1.19158 1.20350 1.19100 1.21753 0.96369 0.97791 1.01257 1.22099 0.95875 0.98017 0.83844 0.90014 1.22153 0.92091 1.04200 1.01461 1.23016 0.81551 1.00067 0.97683 1.87933 1.20336 1.77668 1.44241 0.91799 0.89890 0.91838 0.80740 0.91228 0.75638 0.89146 0.88967 0.88876 0.90933 0.83200 0.91691 0.93089 0.89600 0.87817 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.57 37.16 0.36 -1.29 16 2 C 0.08 1.04 3.38 -26.79 -0.09 0.95 16 3 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.02 0.26 5.77 -3.75 -0.02 0.24 16 5 N -0.58 -8.56 3.03 -165.54 -0.50 -9.06 16 6 C 0.51 8.50 7.53 -11.63 -0.09 8.41 16 7 O -0.52 -8.70 12.27 5.49 0.07 -8.63 16 8 C 0.49 9.24 7.63 -11.63 -0.09 9.15 16 9 O -0.45 -9.61 10.44 5.48 0.06 -9.55 16 10 N -0.63 -12.12 5.32 -10.34 -0.06 -12.17 16 11 C 0.13 2.89 6.28 -83.82 -0.53 2.37 16 12 C -0.26 -5.53 9.97 -39.08 -0.39 -5.92 16 13 C -0.08 -1.79 10.02 -39.69 -0.40 -2.19 16 14 C -0.23 -5.56 9.79 -38.83 -0.38 -5.94 16 15 C 0.12 3.01 5.58 -106.85 -0.60 2.41 16 16 C -0.46 -11.96 9.08 -37.74 -0.34 -12.30 16 17 H 0.08 1.89 7.86 -52.49 -0.41 1.48 16 18 C 0.07 1.71 5.31 -17.34 -0.09 1.62 16 19 N -0.77 -19.27 10.48 55.55 0.58 -18.69 16 20 Si 0.91 18.42 29.57 -169.99 -5.03 13.40 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.15 -3.83 7.32 -38.67 -0.28 -4.11 16 25 C 0.10 1.27 3.68 -67.42 -0.25 1.02 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 C -0.14 -1.65 7.64 37.16 0.28 -1.36 16 28 C 0.05 0.60 6.29 37.31 0.23 0.84 16 29 O -0.38 -5.01 10.39 -35.23 -0.37 -5.38 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.18 3.02 3.81 -56.65 -0.22 2.81 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.41 6.77 8.30 -40.82 -0.34 6.43 16 36 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 39 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 40 H 0.15 3.99 4.19 -52.48 -0.22 3.77 16 41 H 0.06 0.85 7.09 -51.93 -0.37 0.48 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.13 6.51 -51.93 -0.34 0.79 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -27.82 361.13 -8.57 -36.39 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.10 Total: 14.38 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.67 Total: -6.12 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.03 Total: -39.92 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.24 Total: -23.56 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.82 -8.57 -36.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453704170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.364 kcal (2) G-P(sol) polarization free energy of solvation -27.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds