Wall clock time and date at job start Tue Mar 31 2020 17:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.51196 * 2 1 4 4 C 1.52877 * 109.62302 * 240.00769 * 2 1 3 5 5 N 1.47151 * 108.60544 * 187.89918 * 4 2 1 6 6 C 1.34777 * 120.98243 * 230.50299 * 5 4 2 7 7 O 1.21357 * 120.00116 * 185.81933 * 6 5 4 8 8 C 1.49353 * 119.99721 * 5.81760 * 6 5 4 9 9 O 1.21371 * 120.00741 * 5.68944 * 8 6 5 10 10 N 1.34786 * 120.00132 * 185.68539 * 8 6 5 11 11 C 1.39740 * 120.00110 * 175.49519 * 10 8 6 12 12 C 1.39346 * 119.94967 * 215.40091 * 11 10 8 13 13 C 1.38471 * 120.42329 * 179.97438 * 12 11 10 14 14 C 1.37699 * 120.32456 * 0.02562 * 13 12 11 15 15 C 1.40741 * 119.89946 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.21183 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99740 * 332.60655 * 16 15 14 18 18 C 1.39932 * 120.00608 * 152.88561 * 16 15 14 19 19 N 1.30829 * 119.99536 * 352.16088 * 18 16 15 20 20 Si 1.86794 * 120.00131 * 172.16405 * 18 16 15 21 21 H 1.48503 * 109.47238 * 60.00024 * 20 18 16 22 22 H 1.48502 * 109.46949 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47068 * 299.99599 * 20 18 16 24 24 C 1.38295 * 119.95350 * 35.70336 * 11 10 8 25 25 C 1.47155 * 118.03979 * 50.22488 * 5 4 2 26 26 H 1.09004 * 109.67318 * 69.43641 * 25 5 4 27 27 C 1.52997 * 109.68457 * 189.95428 * 25 5 4 28 28 C 1.53295 * 108.38465 * 309.71834 * 25 5 4 29 29 O 1.42964 * 109.22191 * 52.29807 * 28 25 5 30 30 H 1.09003 * 109.47457 * 299.89991 * 1 2 3 31 31 H 1.09001 * 109.47315 * 59.89569 * 1 2 3 32 32 H 1.08998 * 109.47474 * 179.89682 * 1 2 3 33 33 H 1.09004 * 109.61865 * 68.08308 * 4 2 1 34 34 H 1.09000 * 109.52450 * 307.66579 * 4 2 1 35 35 H 0.97002 * 119.99547 * 355.49658 * 10 8 6 36 36 H 1.08003 * 119.78847 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.83942 * 180.02562 * 13 12 11 38 38 H 1.07999 * 120.05049 * 180.02562 * 14 13 12 39 39 H 0.97000 * 119.99953 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.16819 * 359.97438 * 24 11 10 41 41 H 1.08994 * 109.47196 * 52.53022 * 27 25 5 42 42 H 1.08997 * 109.46867 * 172.53006 * 27 25 5 43 43 H 1.09004 * 109.46953 * 292.52918 * 27 25 5 44 44 H 1.08995 * 109.51366 * 172.21650 * 28 25 5 45 45 H 1.08996 * 109.51562 * 292.37740 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0434 -0.7198 -1.2472 5 7 3.5022 -0.8750 -1.1326 6 6 4.3206 -0.5017 -2.1363 7 8 5.5098 -0.7337 -2.0677 8 6 3.7639 0.1975 -3.3328 9 8 2.5945 0.5218 -3.3569 10 7 4.5600 0.4686 -4.3861 11 6 4.0195 1.0373 -5.5425 12 6 4.5191 0.6788 -6.7929 13 6 3.9905 1.2358 -7.9452 14 6 2.9648 2.1513 -7.8676 15 6 2.4506 2.5240 -6.6116 16 6 1.3978 3.4639 -6.5241 17 1 1.2740 4.2094 -7.2957 18 6 0.5197 3.4319 -5.4350 19 7 0.5751 2.4440 -4.5791 20 14 -0.7314 4.7995 -5.2034 21 1 -1.6282 4.8554 -6.3857 22 1 -1.5363 4.5327 -3.9843 23 1 -0.0246 6.0972 -5.0563 24 6 2.9939 1.9597 -5.4439 25 6 4.0416 -1.4440 0.1127 26 1 3.7772 -2.4994 0.1787 27 6 5.5639 -1.2919 0.1318 28 6 3.4312 -0.6839 1.2958 29 8 2.0075 -0.6758 1.1658 30 1 -0.3634 0.5123 0.8909 31 1 -0.3634 0.5154 -0.8890 32 1 -0.3634 -1.0276 -0.0019 33 1 1.8053 -0.1315 -2.1334 34 1 1.5744 -1.7011 -1.3204 35 1 5.5082 0.2688 -4.3413 36 1 5.3232 -0.0388 -6.8639 37 1 4.3845 0.9509 -8.9094 38 1 2.5555 2.5827 -8.7691 39 1 -0.0332 2.4220 -3.8239 40 1 2.6089 2.2418 -4.4750 41 1 5.8275 -0.2515 -0.0580 42 1 5.9468 -1.5916 1.1073 43 1 6.0019 -1.9244 -0.6405 44 1 3.7089 -1.1767 2.2274 45 1 3.8021 0.3410 1.3005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453704170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:46 Heat of formation + Delta-G solvation = -70.529786 kcal Electronic energy + Delta-G solvation = -29632.586318 eV Core-core repulsion = 25615.811573 eV Total energy + Delta-G solvation = -4016.774746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.39142 -40.77300 -39.52945 -38.86785 -36.58885 -35.78714 -34.96244 -34.50972 -31.74957 -31.41776 -30.30055 -27.84538 -27.20341 -26.85571 -25.86842 -23.77733 -22.88915 -22.49937 -21.70751 -20.80246 -19.48738 -18.68696 -17.97163 -17.66914 -17.49456 -17.15921 -16.71511 -16.47789 -16.42541 -16.20336 -16.01168 -15.56581 -15.21090 -14.87725 -14.52055 -14.37841 -14.06788 -14.02103 -13.87880 -13.44737 -13.26055 -13.12573 -12.93546 -12.90111 -12.75520 -12.66592 -12.63203 -12.23314 -12.09736 -12.03265 -11.69252 -11.57051 -11.41152 -11.25903 -11.05997 -10.88729 -9.80124 -9.71600 -9.23791 -8.84787 -8.36563 -6.29466 0.18100 0.95664 1.12140 1.26846 1.41166 1.51253 1.54401 2.12555 2.25949 2.33555 2.69110 2.84770 3.23122 3.58009 3.76942 3.78837 3.94121 3.97248 4.02110 4.21020 4.46973 4.49274 4.52515 4.61333 4.69819 4.71481 4.74741 4.84811 4.91779 4.95751 5.01808 5.03776 5.14720 5.24294 5.24754 5.31561 5.43951 5.47896 5.76499 5.86044 5.92906 6.01362 6.08434 6.20560 6.36142 6.44208 6.65678 6.73159 7.02042 7.07102 7.10802 8.46113 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.004551 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.971407 B = 6151.593740 C = 8273.831183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.049 0.951 4 C 0.020 3.980 5 N -0.579 5.579 6 C 0.519 3.481 7 O -0.524 6.524 8 C 0.480 3.520 9 O -0.477 6.477 10 N -0.629 5.629 11 C 0.129 3.871 12 C -0.253 4.253 13 C -0.080 4.080 14 C -0.250 4.250 15 C 0.084 3.916 16 C -0.499 4.499 17 H 0.073 0.927 18 C 0.030 3.970 19 N -0.794 5.794 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.265 1.265 24 C -0.178 4.178 25 C 0.101 3.899 26 H 0.096 0.904 27 C -0.134 4.134 28 C 0.053 3.947 29 O -0.387 6.387 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.078 0.922 35 H 0.420 0.580 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.283 0.717 40 H 0.132 0.868 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.139 0.861 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 -6.863 12.214 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.024 3.976 3 H 0.068 0.932 4 C -0.101 4.101 5 N -0.313 5.313 6 C 0.301 3.699 7 O -0.402 6.402 8 C 0.262 3.738 9 O -0.352 6.352 10 N -0.275 5.275 11 C 0.037 3.963 12 C -0.273 4.273 13 C -0.099 4.099 14 C -0.270 4.270 15 C 0.081 3.919 16 C -0.529 4.529 17 H 0.091 0.909 18 C -0.186 4.186 19 N -0.419 5.419 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.193 1.193 23 H -0.189 1.189 24 C -0.199 4.199 25 C -0.001 4.001 26 H 0.114 0.886 27 C -0.191 4.191 28 C -0.024 4.024 29 O -0.306 6.306 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.167 0.833 34 H 0.097 0.903 35 H 0.258 0.742 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.150 0.850 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.157 0.843 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.367 -6.991 12.640 14.831 hybrid contribution -0.023 0.592 -0.319 0.673 sum 3.344 -6.399 12.320 14.280 Atomic orbital electron populations 1.21677 0.90812 1.03637 1.03329 1.22320 0.96747 0.94483 0.84032 0.93248 1.23905 0.77900 1.03988 1.04322 1.48130 1.07887 1.59898 1.15382 1.19814 0.86307 0.79918 0.83815 1.90754 1.15335 1.55007 1.79101 1.20759 0.86833 0.81293 0.84922 1.90548 1.16169 1.50203 1.78276 1.42987 1.12477 1.59453 1.12617 1.17798 0.97543 0.95820 0.85185 1.20488 1.07620 1.08656 0.90583 1.20699 0.95629 0.96056 0.97499 1.21276 1.03931 1.05357 0.96449 1.17889 0.91277 0.91466 0.91295 1.19751 1.11204 1.14648 1.07254 0.90893 1.26690 0.99702 0.97993 0.94242 1.69946 1.33142 1.28045 1.10753 0.85353 0.77800 0.78497 0.78625 1.18751 1.19250 1.18941 1.21660 0.98152 0.99721 1.00417 1.22386 0.96304 0.98748 0.82660 0.88625 1.22038 0.91528 1.02709 1.02844 1.23221 0.80400 1.00208 0.98555 1.87932 1.21565 1.77431 1.43645 0.90655 0.90693 0.90965 0.83255 0.90350 0.74156 0.85874 0.85338 0.88305 0.90593 0.85017 0.93490 0.89719 0.91150 0.84348 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.57 71.98 0.69 -2.41 16 2 C 0.08 2.15 3.38 30.55 0.10 2.25 16 3 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 4 C 0.02 0.58 5.77 86.21 0.50 1.08 16 5 N -0.58 -16.58 3.03 -796.00 -2.41 -18.99 16 6 C 0.52 17.04 7.53 87.24 0.66 17.70 16 7 O -0.52 -17.07 12.27 -3.27 -0.04 -17.11 16 8 C 0.48 18.58 7.63 87.24 0.67 19.24 16 9 O -0.48 -21.05 10.44 -3.31 -0.03 -21.08 16 10 N -0.63 -24.17 5.32 -304.98 -1.62 -25.79 16 11 C 0.13 5.88 6.28 38.16 0.24 6.12 16 12 C -0.25 -10.50 9.97 22.59 0.23 -10.27 16 13 C -0.08 -3.39 10.02 22.20 0.22 -3.17 16 14 C -0.25 -12.15 9.79 22.75 0.22 -11.93 16 15 C 0.08 4.54 5.58 -21.31 -0.12 4.42 16 16 C -0.50 -27.04 9.08 23.46 0.21 -26.82 16 17 H 0.07 3.81 7.86 -2.91 -0.02 3.78 16 18 C 0.03 1.52 5.31 85.25 0.45 1.98 16 19 N -0.79 -41.36 10.48 21.82 0.23 -41.13 16 20 Si 0.98 38.65 29.57 68.60 2.03 40.68 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 24 C -0.18 -9.39 7.32 22.86 0.17 -9.22 16 25 C 0.10 2.21 3.68 44.96 0.17 2.38 16 26 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 27 C -0.13 -2.81 7.64 71.98 0.55 -2.26 16 28 C 0.05 1.04 6.29 72.08 0.45 1.49 16 29 O -0.39 -9.32 10.39 -148.98 -1.55 -10.87 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.15 5.37 3.81 -77.26 -0.29 5.08 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.42 13.68 8.30 -92.71 -0.77 12.91 16 36 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 39 H 0.28 13.58 8.30 -92.71 -0.77 12.81 16 40 H 0.13 7.39 4.19 -2.91 -0.01 7.37 16 41 H 0.05 1.16 7.09 -2.39 -0.02 1.14 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.72 6.51 -2.38 -0.02 1.70 16 44 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -62.00 361.13 1.98 -60.02 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -0.02 Total: 43.70 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.41 Total: -9.43 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -3.80 Total: -85.90 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -1.62 Total: -49.06 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -62.00 1.98 -60.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453704170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.513 kcal (2) G-P(sol) polarization free energy of solvation -62.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds