Wall clock time and date at job start Tue Mar 31 2020 17:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.51551 * 2 1 4 4 C 1.53300 * 109.51105 * 239.89436 * 2 1 3 5 5 N 1.47154 * 108.38137 * 187.72805 * 4 2 1 6 6 C 1.34775 * 120.97969 * 230.51399 * 5 4 2 7 7 O 1.21358 * 120.00086 * 173.50378 * 6 5 4 8 8 C 1.49359 * 120.00067 * 353.50352 * 6 5 4 9 9 O 1.21377 * 119.99684 * 353.87578 * 8 6 5 10 10 N 1.34780 * 120.00206 * 173.87711 * 8 6 5 11 11 C 1.39740 * 119.99778 * 174.69231 * 10 8 6 12 12 C 1.39344 * 119.95326 * 326.79121 * 11 10 8 13 13 C 1.38475 * 120.42175 * 179.76574 * 12 11 10 14 14 C 1.37691 * 120.32597 * 0.51975 * 13 12 11 15 15 C 1.40744 * 119.90005 * 359.73776 * 14 13 12 16 16 C 1.41407 * 120.21174 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00335 * 147.65015 * 16 15 14 18 18 C 1.39933 * 119.99813 * 327.64977 * 16 15 14 19 19 N 1.30833 * 120.00361 * 171.51483 * 18 16 15 20 20 Si 1.86805 * 120.00033 * 351.51104 * 18 16 15 21 21 H 1.48500 * 109.46798 * 90.59524 * 20 18 16 22 22 H 1.48501 * 109.46915 * 210.59895 * 20 18 16 23 23 H 1.48500 * 109.46670 * 330.59892 * 20 18 16 24 24 C 1.38302 * 119.95139 * 147.07172 * 11 10 8 25 25 C 1.47147 * 118.03893 * 50.78737 * 5 4 2 26 26 H 1.08995 * 109.68264 * 189.49274 * 25 5 4 27 27 C 1.53001 * 109.68243 * 68.93492 * 25 5 4 28 28 C 1.53716 * 108.16222 * 309.15876 * 25 5 4 29 29 O 1.42962 * 109.54992 * 120.12516 * 2 1 3 30 30 H 1.09000 * 109.47168 * 180.10288 * 1 2 3 31 31 H 1.08998 * 109.47222 * 300.10556 * 1 2 3 32 32 H 1.09002 * 109.46710 * 60.10213 * 1 2 3 33 33 H 1.08996 * 109.67911 * 68.00214 * 4 2 1 34 34 H 1.09001 * 109.67955 * 307.44925 * 4 2 1 35 35 H 0.96991 * 119.99692 * 354.40800 * 10 8 6 36 36 H 1.07997 * 119.78725 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.83355 * 180.23745 * 13 12 11 38 38 H 1.08004 * 120.05397 * 179.76453 * 14 13 12 39 39 H 0.96991 * 120.00159 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.16565 * 359.95074 * 24 11 10 41 41 H 1.08998 * 109.46885 * 60.00681 * 27 25 5 42 42 H 1.09003 * 109.47159 * 179.97438 * 27 25 5 43 43 H 1.08998 * 109.47123 * 300.00206 * 27 25 5 44 44 H 1.09004 * 109.65646 * 292.57383 * 28 25 5 45 45 H 1.08994 * 109.44363 * 172.37645 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0421 -0.7248 -1.2500 5 7 3.5014 -0.8748 -1.1344 6 6 4.3188 -0.5021 -2.1391 7 8 5.5220 -0.5228 -1.9817 8 6 3.7440 -0.0638 -3.4461 9 8 2.5492 -0.1482 -3.6423 10 7 4.5520 0.4254 -4.4075 11 6 4.0322 0.7316 -5.6680 12 6 2.9879 -0.0271 -6.1929 13 6 2.4622 0.2707 -7.4389 14 6 2.9734 1.3140 -8.1778 15 6 4.0317 2.0860 -7.6631 16 6 4.5613 3.1593 -8.4161 17 1 4.9489 4.0327 -7.9127 18 6 4.5832 3.0899 -9.8135 19 7 4.9165 4.1423 -10.5157 20 14 4.1367 1.4944 -10.6765 21 1 2.6789 1.4757 -10.9589 22 1 4.8895 1.3945 -11.9527 23 1 4.4867 0.3450 -9.8039 24 6 4.5588 1.7835 -6.3952 25 6 4.0413 -1.4494 0.1080 26 1 5.1261 -1.3441 0.1199 27 6 3.6655 -2.9298 0.1970 28 6 3.4323 -0.6844 1.2940 29 8 2.0084 -0.6761 1.1652 30 1 -0.3633 -1.0277 0.0018 31 1 -0.3633 0.5155 0.8890 32 1 -0.3633 0.5123 -0.8909 33 1 1.8023 -0.1395 -2.1377 34 1 1.5764 -1.7078 -1.3210 35 1 5.4934 0.5689 -4.2232 36 1 2.5832 -0.8500 -5.6225 37 1 1.6503 -0.3212 -7.8349 38 1 2.5626 1.5401 -9.1508 39 1 4.9314 4.0942 -11.4844 40 1 5.3707 2.3699 -5.9910 41 1 4.0817 -3.4624 -0.6582 42 1 4.0675 -3.3520 1.1180 43 1 2.5801 -3.0299 0.1943 44 1 3.8033 0.3406 1.2986 45 1 3.7108 -1.1774 2.2253 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453704173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:57 Heat of formation + Delta-G solvation = -71.200132 kcal Electronic energy + Delta-G solvation = -28633.632232 eV Core-core repulsion = 24616.828418 eV Total energy + Delta-G solvation = -4016.803814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.27771 -39.76272 -38.48206 -37.57880 -35.56330 -34.61552 -33.63628 -33.26591 -30.79366 -30.40645 -29.15807 -26.76504 -26.70533 -25.36844 -24.97728 -22.74951 -21.64202 -21.29086 -20.27151 -19.45588 -18.16682 -17.66238 -17.26938 -16.70350 -16.26220 -16.07056 -15.86333 -15.50285 -15.24683 -14.93991 -14.58070 -14.30242 -14.24946 -13.79246 -13.51712 -13.27473 -12.78612 -12.74207 -12.66154 -12.59714 -12.51911 -12.17995 -12.07933 -11.97580 -11.70166 -11.46234 -11.26481 -11.15370 -10.87744 -10.80668 -10.66374 -10.39761 -10.14905 -9.78314 -9.56657 -9.31752 -8.97744 -8.84862 -7.77890 -7.31199 -6.94184 -4.57869 1.24834 2.12888 2.46109 2.54148 3.07945 3.18918 3.22077 3.29381 3.34014 3.46432 3.94866 4.25678 4.39374 4.46379 4.48440 4.71096 4.74069 4.82294 4.98989 5.17537 5.22864 5.28571 5.30095 5.38076 5.48701 5.55510 5.60468 5.72900 5.86252 5.89291 5.93139 6.02568 6.19794 6.25758 6.38199 6.56394 6.61020 6.81913 6.85533 7.02262 7.13944 7.29608 7.45797 7.52910 7.74419 7.76407 7.93197 8.16309 8.29834 8.53120 8.73943 10.08357 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.002624 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.327090 B =10669.185309 C =10978.210472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 H 0.062 0.938 4 C 0.041 3.959 5 N -0.583 5.583 6 C 0.513 3.487 7 O -0.520 6.520 8 C 0.503 3.497 9 O -0.495 6.495 10 N -0.629 5.629 11 C 0.157 3.843 12 C -0.226 4.226 13 C -0.068 4.068 14 C -0.237 4.237 15 C 0.105 3.895 16 C -0.446 4.446 17 H 0.091 0.909 18 C 0.081 3.919 19 N -0.816 5.816 20 Si 0.916 3.084 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.242 1.242 24 C -0.221 4.221 25 C 0.097 3.903 26 H 0.110 0.890 27 C -0.155 4.155 28 C 0.057 3.943 29 O -0.377 6.377 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.077 0.923 35 H 0.415 0.585 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.285 0.715 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 -10.200 19.154 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 H 0.080 0.920 4 C -0.080 4.080 5 N -0.318 5.318 6 C 0.296 3.704 7 O -0.396 6.396 8 C 0.285 3.715 9 O -0.372 6.372 10 N -0.274 5.274 11 C 0.065 3.935 12 C -0.247 4.247 13 C -0.086 4.086 14 C -0.257 4.257 15 C 0.102 3.898 16 C -0.475 4.475 17 H 0.109 0.891 18 C -0.136 4.136 19 N -0.441 5.441 20 Si 0.743 3.257 21 H -0.197 1.197 22 H -0.222 1.222 23 H -0.166 1.166 24 C -0.242 4.242 25 C -0.005 4.005 26 H 0.127 0.873 27 C -0.213 4.213 28 C -0.021 4.021 29 O -0.296 6.296 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.096 0.904 35 H 0.252 0.748 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.479 -10.200 19.024 22.045 hybrid contribution 0.510 -0.410 -0.559 0.861 sum -3.969 -10.610 18.464 21.662 Atomic orbital electron populations 1.21712 0.91922 1.03277 1.03043 1.22582 0.95869 0.95366 0.84781 0.91970 1.23638 0.78246 1.03834 1.02284 1.48058 1.07931 1.60526 1.15268 1.20188 0.86545 0.78598 0.85037 1.90749 1.14187 1.52879 1.81803 1.19984 0.86856 0.79631 0.85067 1.90504 1.14230 1.53374 1.79100 1.43221 1.13026 1.60409 1.10703 1.17533 0.97084 0.96141 0.82754 1.20338 1.02773 1.03848 0.97768 1.20478 0.97941 0.96343 0.93879 1.21145 1.01262 1.01966 1.01299 1.17503 0.89673 0.91300 0.91340 1.19452 1.34849 1.02348 0.90896 0.89068 1.26135 0.91720 0.98057 0.97732 1.69624 1.36045 1.29855 1.08548 0.86293 0.78375 0.83224 0.77772 1.19701 1.22189 1.16558 1.20778 1.05036 0.99489 0.98895 1.22124 1.00718 0.94072 0.83631 0.87253 1.22015 1.02907 0.93982 1.02429 1.23025 0.81515 0.99861 0.97693 1.87945 1.20428 1.77412 1.43766 0.91561 0.91520 0.90308 0.83172 0.90429 0.74793 0.87289 0.88170 0.87933 0.90406 0.87480 0.92204 0.91060 0.91467 0.92512 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.16 0.36 -0.78 16 2 C 0.07 0.71 3.40 -26.57 -0.09 0.62 16 3 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 4 C 0.04 0.46 5.07 -3.53 -0.02 0.44 16 5 N -0.58 -7.01 2.71 -165.04 -0.45 -7.46 16 6 C 0.51 7.40 7.75 -11.63 -0.09 7.31 16 7 O -0.52 -8.21 15.98 5.49 0.09 -8.12 16 8 C 0.50 8.13 7.49 -11.63 -0.09 8.04 16 9 O -0.50 -8.54 10.82 5.47 0.06 -8.48 16 10 N -0.63 -10.76 5.31 -10.34 -0.05 -10.82 16 11 C 0.16 3.21 6.27 -83.82 -0.53 2.69 16 12 C -0.23 -4.74 8.66 -39.08 -0.34 -5.08 16 13 C -0.07 -1.44 10.01 -39.69 -0.40 -1.84 16 14 C -0.24 -5.57 6.91 -38.84 -0.27 -5.84 16 15 C 0.11 2.59 5.15 -106.85 -0.55 2.04 16 16 C -0.45 -11.79 9.62 -37.74 -0.36 -12.16 16 17 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 18 C 0.08 2.10 5.49 -17.34 -0.10 2.01 16 19 N -0.82 -21.56 13.93 55.55 0.77 -20.78 16 20 Si 0.92 20.52 24.36 -169.99 -4.14 16.38 16 21 H -0.27 -5.87 6.66 56.52 0.38 -5.50 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.24 -5.51 6.56 56.52 0.37 -5.14 16 24 C -0.22 -4.91 9.70 -38.67 -0.38 -5.29 16 25 C 0.10 0.95 3.26 -67.21 -0.22 0.73 16 26 H 0.11 1.11 7.06 -51.93 -0.37 0.75 16 27 C -0.16 -1.31 9.25 37.16 0.34 -0.97 16 28 C 0.06 0.48 6.38 37.53 0.24 0.72 16 29 O -0.38 -3.77 10.01 -35.23 -0.35 -4.13 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.15 1.95 4.39 -54.57 -0.24 1.71 16 34 H 0.08 0.83 7.65 -51.93 -0.40 0.43 16 35 H 0.42 6.31 8.32 -40.82 -0.34 5.97 16 36 H 0.11 2.18 6.38 -52.49 -0.34 1.85 16 37 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.10 2.39 4.24 -52.48 -0.22 2.17 16 39 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 40 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.60 7.21 -51.93 -0.37 0.23 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -28.77 360.30 -7.24 -36.01 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.12 Total: 9.32 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.48 Total: -7.35 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.27 Total: -39.06 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.21 Total: -20.73 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.14 Total: 16.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.77 -7.24 -36.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453704173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.187 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds