Wall clock time and date at job start Tue Mar 31 2020 17:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.51551 * 2 1 4 4 C 1.53300 * 109.51105 * 239.89436 * 2 1 3 5 5 N 1.47154 * 108.38137 * 187.72805 * 4 2 1 6 6 C 1.34775 * 120.97969 * 230.51399 * 5 4 2 7 7 O 1.21358 * 120.00086 * 173.50378 * 6 5 4 8 8 C 1.49359 * 120.00067 * 353.50352 * 6 5 4 9 9 O 1.21377 * 119.99684 * 353.87578 * 8 6 5 10 10 N 1.34780 * 120.00206 * 173.87711 * 8 6 5 11 11 C 1.39740 * 119.99778 * 174.69231 * 10 8 6 12 12 C 1.39344 * 119.95326 * 326.79121 * 11 10 8 13 13 C 1.38475 * 120.42175 * 179.76574 * 12 11 10 14 14 C 1.37691 * 120.32597 * 0.51975 * 13 12 11 15 15 C 1.40744 * 119.90005 * 359.73776 * 14 13 12 16 16 C 1.41407 * 120.21174 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00335 * 147.65015 * 16 15 14 18 18 C 1.39933 * 119.99813 * 327.64977 * 16 15 14 19 19 N 1.30833 * 120.00361 * 171.51483 * 18 16 15 20 20 Si 1.86805 * 120.00033 * 351.51104 * 18 16 15 21 21 H 1.48500 * 109.46798 * 90.59524 * 20 18 16 22 22 H 1.48501 * 109.46915 * 210.59895 * 20 18 16 23 23 H 1.48500 * 109.46670 * 330.59892 * 20 18 16 24 24 C 1.38302 * 119.95139 * 147.07172 * 11 10 8 25 25 C 1.47147 * 118.03893 * 50.78737 * 5 4 2 26 26 H 1.08995 * 109.68264 * 189.49274 * 25 5 4 27 27 C 1.53001 * 109.68243 * 68.93492 * 25 5 4 28 28 C 1.53716 * 108.16222 * 309.15876 * 25 5 4 29 29 O 1.42962 * 109.54992 * 120.12516 * 2 1 3 30 30 H 1.09000 * 109.47168 * 180.10288 * 1 2 3 31 31 H 1.08998 * 109.47222 * 300.10556 * 1 2 3 32 32 H 1.09002 * 109.46710 * 60.10213 * 1 2 3 33 33 H 1.08996 * 109.67911 * 68.00214 * 4 2 1 34 34 H 1.09001 * 109.67955 * 307.44925 * 4 2 1 35 35 H 0.96991 * 119.99692 * 354.40800 * 10 8 6 36 36 H 1.07997 * 119.78725 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.83355 * 180.23745 * 13 12 11 38 38 H 1.08004 * 120.05397 * 179.76453 * 14 13 12 39 39 H 0.96991 * 120.00159 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.16565 * 359.95074 * 24 11 10 41 41 H 1.08998 * 109.46885 * 60.00681 * 27 25 5 42 42 H 1.09003 * 109.47159 * 179.97438 * 27 25 5 43 43 H 1.08998 * 109.47123 * 300.00206 * 27 25 5 44 44 H 1.09004 * 109.65646 * 292.57383 * 28 25 5 45 45 H 1.08994 * 109.44363 * 172.37645 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0421 -0.7248 -1.2500 5 7 3.5014 -0.8748 -1.1344 6 6 4.3188 -0.5021 -2.1391 7 8 5.5220 -0.5228 -1.9817 8 6 3.7440 -0.0638 -3.4461 9 8 2.5492 -0.1482 -3.6423 10 7 4.5520 0.4254 -4.4075 11 6 4.0322 0.7316 -5.6680 12 6 2.9879 -0.0271 -6.1929 13 6 2.4622 0.2707 -7.4389 14 6 2.9734 1.3140 -8.1778 15 6 4.0317 2.0860 -7.6631 16 6 4.5613 3.1593 -8.4161 17 1 4.9489 4.0327 -7.9127 18 6 4.5832 3.0899 -9.8135 19 7 4.9165 4.1423 -10.5157 20 14 4.1367 1.4944 -10.6765 21 1 2.6789 1.4757 -10.9589 22 1 4.8895 1.3945 -11.9527 23 1 4.4867 0.3450 -9.8039 24 6 4.5588 1.7835 -6.3952 25 6 4.0413 -1.4494 0.1080 26 1 5.1261 -1.3441 0.1199 27 6 3.6655 -2.9298 0.1970 28 6 3.4323 -0.6844 1.2940 29 8 2.0084 -0.6761 1.1652 30 1 -0.3633 -1.0277 0.0018 31 1 -0.3633 0.5155 0.8890 32 1 -0.3633 0.5123 -0.8909 33 1 1.8023 -0.1395 -2.1377 34 1 1.5764 -1.7078 -1.3210 35 1 5.4934 0.5689 -4.2232 36 1 2.5832 -0.8500 -5.6225 37 1 1.6503 -0.3212 -7.8349 38 1 2.5626 1.5401 -9.1508 39 1 4.9314 4.0942 -11.4844 40 1 5.3707 2.3699 -5.9910 41 1 4.0817 -3.4624 -0.6582 42 1 4.0675 -3.3520 1.1180 43 1 2.5801 -3.0299 0.1943 44 1 3.8033 0.3406 1.2986 45 1 3.7108 -1.1774 2.2253 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453704173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:56 Heat of formation + Delta-G solvation = -89.860774 kcal Electronic energy + Delta-G solvation = -28634.441418 eV Core-core repulsion = 24616.828418 eV Total energy + Delta-G solvation = -4017.613000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.43813 -40.92852 -39.65403 -39.11872 -36.75415 -35.91053 -35.07605 -34.41578 -32.24228 -31.60225 -30.78476 -27.68129 -27.39252 -27.14182 -26.24958 -23.80185 -22.99764 -22.82213 -21.60424 -20.55340 -19.66527 -19.02147 -18.35872 -17.91932 -17.53001 -17.32755 -17.16084 -16.64635 -16.56526 -16.22503 -15.79437 -15.50351 -15.42697 -15.24455 -14.61377 -14.45279 -14.43547 -14.25733 -13.95851 -13.60549 -13.33005 -13.23090 -13.20795 -12.94995 -12.79065 -12.68750 -12.64533 -12.50668 -12.37309 -12.15638 -11.89909 -11.61891 -11.60472 -11.22907 -11.21632 -10.99774 -10.31192 -9.79800 -9.58176 -8.99676 -8.85668 -6.56238 -0.04677 0.74766 0.76473 1.06186 1.28689 1.42489 1.50959 1.92776 2.13148 2.21221 2.61875 2.70862 3.05984 3.43538 3.56900 3.72662 3.94814 3.98407 4.04883 4.23417 4.25756 4.41219 4.45449 4.47252 4.54734 4.62484 4.66967 4.69574 4.81335 4.84990 4.87559 4.88480 4.93790 5.01569 5.13067 5.20511 5.28802 5.29813 5.46597 5.57353 5.73569 5.80706 5.88262 6.02333 6.10490 6.22971 6.36081 6.50592 6.64688 6.75124 6.82908 8.22357 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.002624 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.327090 B =10669.185309 C =10978.210472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.074 3.926 3 H 0.057 0.943 4 C 0.043 3.957 5 N -0.576 5.576 6 C 0.517 3.483 7 O -0.537 6.537 8 C 0.504 3.496 9 O -0.504 6.504 10 N -0.630 5.630 11 C 0.165 3.835 12 C -0.218 4.218 13 C -0.066 4.066 14 C -0.251 4.251 15 C 0.089 3.911 16 C -0.480 4.480 17 H 0.057 0.943 18 C 0.044 3.956 19 N -0.858 5.858 20 Si 0.969 3.031 21 H -0.256 1.256 22 H -0.284 1.284 23 H -0.247 1.247 24 C -0.229 4.229 25 C 0.092 3.908 26 H 0.106 0.894 27 C -0.149 4.149 28 C 0.057 3.943 29 O -0.382 6.382 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.424 0.576 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.293 0.707 40 H 0.112 0.888 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 -12.839 21.146 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 H 0.075 0.925 4 C -0.079 4.079 5 N -0.309 5.309 6 C 0.299 3.701 7 O -0.415 6.415 8 C 0.287 3.713 9 O -0.381 6.381 10 N -0.276 5.276 11 C 0.072 3.928 12 C -0.239 4.239 13 C -0.085 4.085 14 C -0.270 4.270 15 C 0.086 3.914 16 C -0.510 4.510 17 H 0.076 0.924 18 C -0.170 4.170 19 N -0.485 5.485 20 Si 0.793 3.207 21 H -0.182 1.182 22 H -0.211 1.211 23 H -0.171 1.171 24 C -0.251 4.251 25 C -0.010 4.010 26 H 0.124 0.876 27 C -0.207 4.207 28 C -0.020 4.020 29 O -0.301 6.301 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.103 0.897 35 H 0.262 0.738 36 H 0.142 0.858 37 H 0.152 0.848 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.790 -12.848 21.066 25.345 hybrid contribution 0.852 0.318 -0.894 1.276 sum -4.937 -12.531 20.172 24.255 Atomic orbital electron populations 1.21711 0.90558 1.03766 1.03600 1.22577 0.96935 0.94776 0.84098 0.92488 1.23611 0.77694 1.04101 1.02456 1.48206 1.08206 1.59234 1.15286 1.19785 0.86443 0.79089 0.84789 1.90749 1.14692 1.54095 1.81963 1.20357 0.86603 0.78775 0.85519 1.90521 1.14645 1.53358 1.79548 1.43167 1.13701 1.60844 1.09854 1.17529 0.96500 0.94999 0.83778 1.20654 1.02087 1.03559 0.97607 1.20841 0.98331 0.95725 0.93587 1.21254 1.01256 1.02666 1.01825 1.17628 0.90286 0.91313 0.92192 1.19433 1.37216 1.02564 0.91798 0.92441 1.26819 0.91463 1.00744 0.97937 1.69665 1.38152 1.31490 1.09217 0.85475 0.78947 0.79344 0.76901 1.18188 1.21125 1.17066 1.20890 1.05441 1.00185 0.98578 1.22395 1.00660 0.95102 0.82817 0.87577 1.21987 1.02691 0.92742 1.03278 1.23180 0.80669 0.99977 0.98200 1.87951 1.21246 1.77328 1.43531 0.91096 0.90761 0.89992 0.84796 0.89675 0.73757 0.85848 0.84775 0.87877 0.89653 0.87039 0.93275 0.88562 0.91769 0.92692 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.57 71.98 0.69 -1.23 16 2 C 0.07 1.30 3.40 30.70 0.10 1.41 16 3 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.04 0.87 5.07 86.36 0.44 1.31 16 5 N -0.58 -12.81 2.71 -794.42 -2.15 -14.96 16 6 C 0.52 14.17 7.75 87.24 0.68 14.85 16 7 O -0.54 -16.29 15.98 -3.27 -0.05 -16.34 16 8 C 0.50 15.58 7.49 87.24 0.65 16.24 16 9 O -0.50 -16.48 10.82 -3.33 -0.04 -16.52 16 10 N -0.63 -20.81 5.31 -304.97 -1.62 -22.43 16 11 C 0.16 6.57 6.27 38.16 0.24 6.81 16 12 C -0.22 -8.61 8.66 22.59 0.20 -8.41 16 13 C -0.07 -2.66 10.01 22.20 0.22 -2.44 16 14 C -0.25 -11.51 6.91 22.75 0.16 -11.36 16 15 C 0.09 4.44 5.15 -21.31 -0.11 4.33 16 16 C -0.48 -26.55 9.62 23.46 0.23 -26.33 16 17 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 18 C 0.04 2.32 5.49 85.25 0.47 2.79 16 19 N -0.86 -47.06 13.93 21.82 0.30 -46.76 16 20 Si 0.97 42.26 24.36 68.60 1.67 43.93 16 21 H -0.26 -10.49 6.66 99.48 0.66 -9.83 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.25 -10.84 6.56 99.48 0.65 -10.19 16 24 C -0.23 -10.29 9.70 22.86 0.22 -10.06 16 25 C 0.09 1.58 3.26 45.11 0.15 1.73 16 26 H 0.11 1.94 7.06 -2.39 -0.02 1.92 16 27 C -0.15 -2.11 9.25 71.98 0.67 -1.44 16 28 C 0.06 0.80 6.38 72.22 0.46 1.26 16 29 O -0.38 -6.60 10.01 -148.98 -1.49 -8.09 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.14 3.27 4.39 -44.22 -0.19 3.08 16 34 H 0.09 1.64 7.65 -2.39 -0.02 1.62 16 35 H 0.42 12.52 8.32 -92.71 -0.77 11.75 16 36 H 0.12 4.55 6.38 -2.91 -0.02 4.53 16 37 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.10 4.68 4.24 -2.91 -0.01 4.67 16 39 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 40 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.96 7.21 -2.39 -0.02 0.95 16 44 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -62.58 360.30 2.06 -60.52 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.02 Total: 31.22 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.46 Total: -10.56 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -3.47 Total: -84.15 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.58 Total: -40.96 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.67 Total: 43.93 kcal Total: -62.58 2.06 -60.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453704173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.341 kcal (2) G-P(sol) polarization free energy of solvation -62.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds