Wall clock time and date at job start Tue Mar 31 2020 17:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.45040 * 2 1 4 4 C 1.53035 * 109.46113 * 240.02617 * 2 1 3 5 5 C 1.53195 * 109.31320 * 178.61673 * 4 2 1 6 6 N 1.46924 * 108.77408 * 54.63447 * 5 4 2 7 7 C 1.34776 * 120.62796 * 126.37056 * 6 5 4 8 8 O 1.21365 * 120.00121 * 6.56647 * 7 6 5 9 9 C 1.49351 * 120.00186 * 186.56044 * 7 6 5 10 10 O 1.21375 * 119.99760 * 7.12603 * 9 7 6 11 11 N 1.34775 * 120.00563 * 187.12138 * 9 7 6 12 12 C 1.39742 * 120.00332 * 184.10496 * 11 9 7 13 13 C 1.39341 * 119.95317 * 144.73715 * 12 11 9 14 14 C 1.38470 * 120.42016 * 179.97438 * 13 12 11 15 15 C 1.37693 * 120.33395 * 359.97438 * 14 13 12 16 16 C 1.40753 * 119.89187 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.20285 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99622 * 152.94578 * 17 16 15 19 19 C 1.39927 * 120.00242 * 332.94173 * 17 16 15 20 20 N 1.30825 * 120.00318 * 352.63145 * 19 17 16 21 21 Si 1.86800 * 119.99921 * 172.63097 * 19 17 16 22 22 H 1.48500 * 109.47392 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47413 * 120.00022 * 21 19 17 24 24 H 1.48499 * 109.47195 * 240.00177 * 21 19 17 25 25 C 1.38304 * 119.94852 * 324.46004 * 12 11 9 26 26 C 1.46920 * 118.74067 * 306.64521 * 6 5 4 27 27 C 1.52755 * 109.00789 * 53.31075 * 26 6 5 28 28 H 1.09001 * 109.36708 * 65.49497 * 27 26 6 29 29 O 1.42901 * 109.59330 * 185.53517 * 27 26 6 30 30 H 1.09000 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47462 * 299.97003 * 1 2 3 32 32 H 1.09006 * 109.46925 * 59.97095 * 1 2 3 33 33 H 1.09007 * 109.49803 * 58.67158 * 4 2 1 34 34 H 1.09000 * 109.53066 * 298.58235 * 4 2 1 35 35 H 1.09007 * 109.58184 * 294.85004 * 5 4 2 36 36 H 1.08999 * 109.70726 * 174.49591 * 5 4 2 37 37 H 0.96999 * 119.99557 * 4.37922 * 11 9 7 38 38 H 1.08002 * 119.79176 * 0.02562 * 13 12 11 39 39 H 1.08005 * 119.83224 * 179.97438 * 14 13 12 40 40 H 1.07992 * 120.05764 * 180.02562 * 15 14 13 41 41 H 0.97000 * 120.00130 * 180.02562 * 20 19 17 42 42 H 1.07991 * 120.16586 * 359.97438 * 25 12 11 43 43 H 1.09002 * 109.58503 * 173.14282 * 26 6 5 44 44 H 1.09000 * 109.58776 * 293.56758 * 26 6 5 45 45 H 0.96694 * 114.00309 * 299.98332 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5714 -0.6887 -1.2641 6 7 4.0678 -1.2488 0.0003 7 6 4.9614 -2.2578 0.0004 8 8 5.4535 -2.6327 -1.0437 9 6 5.3460 -2.9146 1.2854 10 8 4.7619 -2.6305 2.3107 11 7 6.3416 -3.8228 1.3066 12 6 6.6445 -4.5001 2.4908 13 6 7.0593 -5.8295 2.4453 14 6 7.3625 -6.5098 3.6127 15 6 7.2577 -5.8791 4.8322 16 6 6.8400 -4.5364 4.8940 17 6 6.7296 -3.8825 6.1429 18 1 6.8440 -2.8102 6.2029 19 6 6.4721 -4.6246 7.3009 20 7 6.1908 -5.8992 7.2120 21 14 6.5300 -3.7954 8.9737 22 1 6.8685 -2.3596 8.8031 23 1 5.2048 -3.9170 9.6327 24 1 7.5633 -4.4503 9.8154 25 6 6.5377 -3.8481 3.7058 26 6 3.5671 -0.6922 1.2644 27 6 2.0399 -0.7207 1.2502 28 1 1.6977 -1.7555 1.2384 29 8 1.5375 -0.0655 2.4166 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6574 -0.2209 -2.1398 34 1 1.6979 -1.7558 -1.2387 35 1 3.9143 0.3408 -1.3672 36 1 3.9439 -1.2832 -2.0983 37 1 6.8504 -4.0034 0.5008 38 1 7.1457 -6.3324 1.4934 39 1 7.6827 -7.5402 3.5664 40 1 7.4957 -6.4137 5.7398 41 1 6.0119 -6.4135 8.0148 42 1 6.2210 -2.8163 3.7420 43 1 3.9346 -1.2906 2.0981 44 1 3.9097 0.3369 1.3717 45 1 1.8213 -0.4698 3.2478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453705817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:32 Heat of formation + Delta-G solvation = -82.009088 kcal Electronic energy + Delta-G solvation = -28702.908800 eV Core-core repulsion = 24685.636274 eV Total energy + Delta-G solvation = -4017.272525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.08439 -39.35787 -38.27609 -37.28475 -35.87412 -34.84244 -33.79174 -33.05215 -30.37029 -29.90696 -28.75903 -28.22477 -25.44431 -25.11983 -23.45748 -22.79184 -21.36405 -20.85905 -20.24019 -19.50265 -18.07024 -17.43375 -17.38178 -16.72378 -15.97647 -15.60034 -15.47416 -15.10459 -15.06605 -14.72812 -14.54845 -14.43683 -13.86973 -13.62054 -13.27166 -13.06881 -12.98359 -12.90988 -12.50081 -12.39295 -12.24111 -11.86952 -11.79454 -11.49929 -11.34333 -11.20238 -11.10817 -10.88029 -10.71733 -10.60114 -10.52860 -10.26398 -10.09807 -9.91166 -9.39594 -9.11057 -8.87842 -8.74715 -7.52223 -7.06349 -6.70643 -4.43510 1.40918 2.33407 2.69865 2.85429 3.07062 3.12375 3.14410 3.40127 3.55661 3.92635 4.05122 4.48014 4.52241 4.55635 4.62340 4.72756 4.86805 5.04542 5.20862 5.26695 5.38868 5.50333 5.59234 5.62342 5.67491 5.68683 5.74889 5.89723 6.07875 6.13243 6.14178 6.18404 6.30555 6.65257 6.77056 6.93235 6.99388 7.01108 7.20829 7.33419 7.55935 7.59448 7.69614 7.85904 7.99284 8.01300 8.13300 8.37559 8.60694 8.86825 8.89395 10.19875 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.003312 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.185750 B = 8451.460688 C =10136.945490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.105 3.895 6 N -0.578 5.578 7 C 0.513 3.487 8 O -0.524 6.524 9 C 0.499 3.501 10 O -0.489 6.489 11 N -0.626 5.626 12 C 0.134 3.866 13 C -0.249 4.249 14 C -0.095 4.095 15 C -0.164 4.164 16 C 0.113 3.887 17 C -0.453 4.453 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.802 5.802 21 Si 0.914 3.086 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.273 1.273 25 C -0.204 4.204 26 C 0.013 3.987 27 C 0.103 3.897 28 H 0.058 0.942 29 O -0.562 6.562 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.412 0.588 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.279 0.721 42 H 0.112 0.888 43 H 0.165 0.835 44 H 0.071 0.929 45 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 8.607 -11.738 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.166 4.166 5 C -0.017 4.017 6 N -0.313 5.313 7 C 0.296 3.704 8 O -0.401 6.401 9 C 0.281 3.719 10 O -0.366 6.366 11 N -0.270 5.270 12 C 0.043 3.957 13 C -0.271 4.271 14 C -0.114 4.114 15 C -0.183 4.183 16 C 0.110 3.890 17 C -0.483 4.483 18 H 0.096 0.904 19 C -0.145 4.145 20 N -0.428 5.428 21 Si 0.738 3.262 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.198 1.198 25 C -0.225 4.225 26 C -0.108 4.108 27 C 0.043 3.957 28 H 0.076 0.924 29 O -0.368 6.368 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.248 0.752 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.181 0.819 44 H 0.089 0.911 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -7.116 8.807 -11.885 16.416 hybrid contribution 0.331 -0.140 0.640 0.734 sum -6.785 8.667 -11.245 15.735 Atomic orbital electron populations 1.21732 0.94336 1.01866 1.01953 1.21159 0.96697 0.99947 0.92861 0.90433 1.21990 0.94726 1.01797 0.98062 1.21783 0.93936 0.99522 0.86508 1.47806 1.41769 1.33535 1.08141 1.20183 0.80170 0.80426 0.89635 1.90733 1.52949 1.63126 1.33257 1.20022 0.81364 0.81671 0.88802 1.90325 1.52227 1.59960 1.34088 1.43140 1.32089 1.38205 1.13558 1.17474 1.02719 0.91442 0.84046 1.20126 1.16502 0.92979 0.97453 1.20533 1.00454 0.97702 0.92733 1.21649 1.03440 0.96664 0.96588 1.17541 0.87640 0.91967 0.91827 1.19603 1.42424 0.95211 0.91028 0.90436 1.25902 0.92509 0.94729 1.01376 1.69774 1.34368 1.07715 1.30932 0.86171 0.78570 0.80490 0.80950 1.18462 1.19938 1.19826 1.21098 1.10078 1.00453 0.90842 1.23976 0.95427 1.02195 0.89184 1.21927 0.92026 0.95756 0.85944 0.92381 1.86433 1.75188 1.58929 1.16237 0.92896 0.91626 0.92898 0.89787 0.91120 0.90877 0.88553 0.75234 0.88961 0.88761 0.85185 0.91006 0.87021 0.81902 0.91113 0.76606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.03 37.16 0.34 -0.94 16 2 C -0.09 -0.85 2.43 -90.58 -0.22 -1.07 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.10 5.36 -26.61 -0.14 -1.24 16 5 C 0.10 1.06 6.42 -3.71 -0.02 1.03 16 6 N -0.58 -7.44 2.98 -173.58 -0.52 -7.96 16 7 C 0.51 7.89 7.74 -11.63 -0.09 7.80 16 8 O -0.52 -8.62 15.95 5.48 0.09 -8.54 16 9 C 0.50 8.78 7.60 -11.63 -0.09 8.69 16 10 O -0.49 -9.44 10.57 5.48 0.06 -9.38 16 11 N -0.63 -11.32 5.31 -10.34 -0.05 -11.37 16 12 C 0.13 2.92 6.28 -83.82 -0.53 2.40 16 13 C -0.25 -5.33 9.97 -39.09 -0.39 -5.72 16 14 C -0.10 -2.15 10.01 -39.70 -0.40 -2.54 16 15 C -0.16 -4.14 8.68 -38.83 -0.34 -4.47 16 16 C 0.11 2.96 5.59 -106.85 -0.60 2.37 16 17 C -0.45 -11.82 9.08 -37.74 -0.34 -12.16 16 18 H 0.08 1.96 7.86 -52.48 -0.41 1.55 16 19 C 0.07 1.75 5.32 -17.35 -0.09 1.66 16 20 N -0.80 -20.33 10.55 55.55 0.59 -19.74 16 21 Si 0.91 18.48 29.57 -169.99 -5.03 13.45 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 C -0.20 -4.94 8.43 -38.67 -0.33 -5.27 16 26 C 0.01 0.17 5.87 -3.94 -0.02 0.15 16 27 C 0.10 1.18 3.05 -26.83 -0.08 1.10 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 O -0.56 -6.47 12.59 -35.23 -0.44 -6.92 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.10 1.02 7.05 -51.93 -0.37 0.65 16 37 H 0.41 6.43 8.33 -40.82 -0.34 6.09 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 40 H 0.13 3.39 5.94 -52.49 -0.31 3.08 16 41 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 42 H 0.11 2.71 6.26 -52.49 -0.33 2.38 16 43 H 0.17 2.43 3.77 -56.80 -0.21 2.21 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.39 3.53 9.08 45.56 0.41 3.95 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -28.95 365.21 -8.47 -37.42 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -5.32 Total: 15.76 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -3.34 Total: -8.22 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.01 Total: -39.08 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.30 Total: -24.84 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.95 -8.47 -37.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453705817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.587 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds