Wall clock time and date at job start Tue Mar 31 2020 17:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.45040 * 2 1 4 4 C 1.53035 * 109.46113 * 240.02617 * 2 1 3 5 5 C 1.53195 * 109.31320 * 178.61673 * 4 2 1 6 6 N 1.46924 * 108.77408 * 54.63447 * 5 4 2 7 7 C 1.34776 * 120.62796 * 126.37056 * 6 5 4 8 8 O 1.21365 * 120.00121 * 6.56647 * 7 6 5 9 9 C 1.49351 * 120.00186 * 186.56044 * 7 6 5 10 10 O 1.21375 * 119.99760 * 7.12603 * 9 7 6 11 11 N 1.34775 * 120.00563 * 187.12138 * 9 7 6 12 12 C 1.39742 * 120.00332 * 184.10496 * 11 9 7 13 13 C 1.39341 * 119.95317 * 144.73715 * 12 11 9 14 14 C 1.38470 * 120.42016 * 179.97438 * 13 12 11 15 15 C 1.37693 * 120.33395 * 359.97438 * 14 13 12 16 16 C 1.40753 * 119.89187 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.20285 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99622 * 152.94578 * 17 16 15 19 19 C 1.39927 * 120.00242 * 332.94173 * 17 16 15 20 20 N 1.30825 * 120.00318 * 352.63145 * 19 17 16 21 21 Si 1.86800 * 119.99921 * 172.63097 * 19 17 16 22 22 H 1.48500 * 109.47392 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47413 * 120.00022 * 21 19 17 24 24 H 1.48499 * 109.47195 * 240.00177 * 21 19 17 25 25 C 1.38304 * 119.94852 * 324.46004 * 12 11 9 26 26 C 1.46920 * 118.74067 * 306.64521 * 6 5 4 27 27 C 1.52755 * 109.00789 * 53.31075 * 26 6 5 28 28 H 1.09001 * 109.36708 * 65.49497 * 27 26 6 29 29 O 1.42901 * 109.59330 * 185.53517 * 27 26 6 30 30 H 1.09000 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47462 * 299.97003 * 1 2 3 32 32 H 1.09006 * 109.46925 * 59.97095 * 1 2 3 33 33 H 1.09007 * 109.49803 * 58.67158 * 4 2 1 34 34 H 1.09000 * 109.53066 * 298.58235 * 4 2 1 35 35 H 1.09007 * 109.58184 * 294.85004 * 5 4 2 36 36 H 1.08999 * 109.70726 * 174.49591 * 5 4 2 37 37 H 0.96999 * 119.99557 * 4.37922 * 11 9 7 38 38 H 1.08002 * 119.79176 * 0.02562 * 13 12 11 39 39 H 1.08005 * 119.83224 * 179.97438 * 14 13 12 40 40 H 1.07992 * 120.05764 * 180.02562 * 15 14 13 41 41 H 0.97000 * 120.00130 * 180.02562 * 20 19 17 42 42 H 1.07991 * 120.16586 * 359.97438 * 25 12 11 43 43 H 1.09002 * 109.58503 * 173.14282 * 26 6 5 44 44 H 1.09000 * 109.58776 * 293.56758 * 26 6 5 45 45 H 0.96694 * 114.00309 * 299.98332 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5714 -0.6887 -1.2641 6 7 4.0678 -1.2488 0.0003 7 6 4.9614 -2.2578 0.0004 8 8 5.4535 -2.6327 -1.0437 9 6 5.3460 -2.9146 1.2854 10 8 4.7619 -2.6305 2.3107 11 7 6.3416 -3.8228 1.3066 12 6 6.6445 -4.5001 2.4908 13 6 7.0593 -5.8295 2.4453 14 6 7.3625 -6.5098 3.6127 15 6 7.2577 -5.8791 4.8322 16 6 6.8400 -4.5364 4.8940 17 6 6.7296 -3.8825 6.1429 18 1 6.8440 -2.8102 6.2029 19 6 6.4721 -4.6246 7.3009 20 7 6.1908 -5.8992 7.2120 21 14 6.5300 -3.7954 8.9737 22 1 6.8685 -2.3596 8.8031 23 1 5.2048 -3.9170 9.6327 24 1 7.5633 -4.4503 9.8154 25 6 6.5377 -3.8481 3.7058 26 6 3.5671 -0.6922 1.2644 27 6 2.0399 -0.7207 1.2502 28 1 1.6977 -1.7555 1.2384 29 8 1.5375 -0.0655 2.4166 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6574 -0.2209 -2.1398 34 1 1.6979 -1.7558 -1.2387 35 1 3.9143 0.3408 -1.3672 36 1 3.9439 -1.2832 -2.0983 37 1 6.8504 -4.0034 0.5008 38 1 7.1457 -6.3324 1.4934 39 1 7.6827 -7.5402 3.5664 40 1 7.4957 -6.4137 5.7398 41 1 6.0119 -6.4135 8.0148 42 1 6.2210 -2.8163 3.7420 43 1 3.9346 -1.2906 2.0981 44 1 3.9097 0.3369 1.3717 45 1 1.8213 -0.4698 3.2478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453705817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:31 Heat of formation + Delta-G solvation = -101.486839 kcal Electronic energy + Delta-G solvation = -28703.753419 eV Core-core repulsion = 24685.636274 eV Total energy + Delta-G solvation = -4018.117144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.36152 -40.63409 -39.42372 -38.95457 -36.93107 -36.34499 -35.03962 -34.56112 -31.77475 -31.25187 -30.33599 -29.30866 -27.29454 -26.36268 -24.38312 -23.96542 -22.95004 -22.38221 -21.51783 -20.68073 -19.61425 -18.84498 -18.45097 -17.90405 -17.36794 -17.25929 -16.84304 -16.49429 -16.43374 -15.95138 -15.77047 -15.63939 -15.09019 -14.93533 -14.68763 -14.42628 -14.21169 -13.97434 -13.90159 -13.60242 -13.32821 -13.23599 -13.07584 -12.85115 -12.64172 -12.56074 -12.46923 -12.21435 -12.00849 -11.94647 -11.74497 -11.64302 -11.51125 -11.20527 -11.16248 -10.84093 -10.12962 -9.89371 -9.38587 -8.84055 -8.54944 -6.38953 0.05228 0.93551 1.00146 1.21670 1.39891 1.50412 1.54437 2.00894 2.22390 2.31049 2.75750 3.07357 3.29717 3.70912 3.72023 3.74083 3.84676 4.02984 4.16647 4.39408 4.44162 4.44901 4.58024 4.62683 4.67365 4.73410 4.80071 4.83744 4.98373 5.03218 5.07437 5.09413 5.11353 5.13660 5.23400 5.33843 5.35753 5.40437 5.66236 5.77270 5.87862 6.06144 6.10731 6.23381 6.30228 6.59062 6.68428 6.73273 6.87929 6.96485 7.01924 8.37674 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.003312 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.185750 B = 8451.460688 C =10136.945490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.083 0.917 4 C -0.120 4.120 5 C 0.100 3.900 6 N -0.569 5.569 7 C 0.519 3.481 8 O -0.535 6.535 9 C 0.496 3.504 10 O -0.509 6.509 11 N -0.623 5.623 12 C 0.142 3.858 13 C -0.242 4.242 14 C -0.094 4.094 15 C -0.190 4.190 16 C 0.085 3.915 17 C -0.491 4.491 18 H 0.070 0.930 19 C 0.031 3.969 20 N -0.831 5.831 21 Si 0.985 3.015 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.262 1.262 25 C -0.222 4.222 26 C 0.017 3.983 27 C 0.106 3.894 28 H 0.044 0.956 29 O -0.569 6.569 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.425 0.575 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.287 0.713 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.081 0.919 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 9.437 -13.429 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.101 0.899 4 C -0.158 4.158 5 C -0.021 4.021 6 N -0.303 5.303 7 C 0.300 3.700 8 O -0.413 6.413 9 C 0.279 3.721 10 O -0.387 6.387 11 N -0.269 5.269 12 C 0.050 3.950 13 C -0.263 4.263 14 C -0.113 4.113 15 C -0.210 4.210 16 C 0.082 3.918 17 C -0.521 4.521 18 H 0.089 0.911 19 C -0.182 4.182 20 N -0.458 5.458 21 Si 0.806 3.194 22 H -0.184 1.184 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.244 4.244 26 C -0.105 4.105 27 C 0.046 3.954 28 H 0.062 0.938 29 O -0.376 6.376 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.263 0.737 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.157 0.843 44 H 0.099 0.901 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -7.835 9.654 -13.614 18.437 hybrid contribution 0.504 -0.377 1.042 1.217 sum -7.331 9.277 -12.572 17.258 Atomic orbital electron populations 1.21695 0.93709 1.01760 1.02362 1.21190 0.97196 1.00009 0.92091 0.89854 1.21980 0.93409 1.01626 0.98740 1.22081 0.94956 1.00372 0.84670 1.47914 1.40526 1.32348 1.09484 1.19666 0.80968 0.81112 0.88210 1.90731 1.53756 1.63860 1.32955 1.20580 0.80767 0.81111 0.89633 1.90377 1.52690 1.60295 1.35315 1.43052 1.32705 1.38257 1.12866 1.17512 1.01188 0.91792 0.84539 1.20514 1.14575 0.92663 0.98580 1.20857 0.99354 0.99003 0.92096 1.21616 1.05371 0.96691 0.97308 1.17868 0.88435 0.92861 0.92650 1.19813 1.44739 0.95196 0.92359 0.91136 1.26720 0.91502 0.95264 1.04696 1.69833 1.34747 1.08900 1.32302 0.85104 0.78934 0.79277 0.76052 1.18426 1.19174 1.18690 1.21092 1.11330 1.00248 0.91703 1.23827 0.96296 1.01996 0.88333 1.21929 0.91073 0.95472 0.86963 0.93830 1.86422 1.75252 1.59154 1.16779 0.93269 0.92867 0.90842 0.86693 0.91922 0.88762 0.88637 0.73660 0.85422 0.85935 0.86701 0.90263 0.88032 0.84251 0.90066 0.75763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.03 71.98 0.65 -1.53 16 2 C -0.09 -1.47 2.43 -10.77 -0.03 -1.49 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.12 -1.71 5.36 30.67 0.16 -1.55 16 5 C 0.10 1.75 6.42 86.36 0.55 2.30 16 6 N -0.57 -13.88 2.98 -821.44 -2.45 -16.32 16 7 C 0.52 15.45 7.74 87.24 0.68 16.12 16 8 O -0.54 -16.79 15.95 -3.29 -0.05 -16.84 16 9 C 0.50 17.44 7.60 87.24 0.66 18.10 16 10 O -0.51 -20.20 10.57 -3.32 -0.04 -20.23 16 11 N -0.62 -22.18 5.31 -304.99 -1.62 -23.80 16 12 C 0.14 6.17 6.28 38.16 0.24 6.41 16 13 C -0.24 -10.01 9.97 22.59 0.23 -9.79 16 14 C -0.09 -4.20 10.01 22.20 0.22 -3.98 16 15 C -0.19 -9.88 8.68 22.76 0.20 -9.68 16 16 C 0.08 4.62 5.59 -21.31 -0.12 4.50 16 17 C -0.49 -26.87 9.08 23.46 0.21 -26.66 16 18 H 0.07 3.78 7.86 -2.91 -0.02 3.76 16 19 C 0.03 1.59 5.32 85.25 0.45 2.05 16 20 N -0.83 -43.37 10.55 21.82 0.23 -43.14 16 21 Si 0.99 38.60 29.57 68.60 2.03 40.63 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 25 C -0.22 -11.18 8.43 22.86 0.19 -10.99 16 26 C 0.02 0.42 5.87 86.22 0.51 0.92 16 27 C 0.11 2.33 3.05 30.53 0.09 2.43 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 O -0.57 -12.86 12.59 -148.98 -1.88 -14.73 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.98 7.65 -2.39 -0.02 0.96 16 32 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.10 1.76 7.05 -2.39 -0.02 1.74 16 37 H 0.42 12.68 8.33 -92.71 -0.77 11.91 16 38 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 40 H 0.12 6.25 5.94 -2.91 -0.02 6.23 16 41 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 42 H 0.10 5.19 6.26 -2.92 -0.02 5.17 16 43 H 0.14 4.25 3.77 -79.61 -0.30 3.95 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.39 7.33 9.08 -74.06 -0.67 6.65 16 Total: -1.00 -64.26 365.21 0.45 -63.81 By element: Atomic # 1 Polarization: 44.15 SS G_CDS: -0.69 Total: 43.46 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 4.91 Total: -12.84 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -3.84 Total: -83.26 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -1.96 Total: -51.80 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -64.26 0.45 -63.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453705817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.675 kcal (2) G-P(sol) polarization free energy of solvation -64.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds