Wall clock time and date at job start Tue Mar 31 2020 17:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.30533 * 2 1 4 4 C 1.54391 * 110.34140 * 237.70873 * 2 1 3 5 5 N 1.48149 * 104.61545 * 217.26396 * 4 2 1 6 6 C 1.34774 * 127.83826 * 219.58881 * 5 4 2 7 7 O 1.21358 * 119.99748 * 180.02562 * 6 5 4 8 8 C 1.49356 * 120.00133 * 359.97438 * 6 5 4 9 9 O 1.21382 * 119.99883 * 0.02562 * 8 6 5 10 10 N 1.34770 * 120.00392 * 180.02562 * 8 6 5 11 11 C 1.39733 * 120.00327 * 174.88816 * 10 8 6 12 12 C 1.39344 * 119.95686 * 145.60072 * 11 10 8 13 13 C 1.38471 * 120.42577 * 179.97438 * 12 11 10 14 14 C 1.37697 * 120.32639 * 0.02562 * 13 12 11 15 15 C 1.40745 * 119.89965 * 359.97438 * 14 13 12 16 16 C 1.41413 * 120.21145 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99585 * 25.23667 * 16 15 14 18 18 C 1.39930 * 119.99837 * 205.23859 * 16 15 14 19 19 N 1.30827 * 120.00201 * 16.70647 * 18 16 15 20 20 Si 1.86807 * 119.99526 * 196.70673 * 18 16 15 21 21 H 1.48506 * 109.46893 * 90.00334 * 20 18 16 22 22 H 1.48498 * 109.46707 * 209.99745 * 20 18 16 23 23 H 1.48495 * 109.47215 * 330.00429 * 20 18 16 24 24 C 1.38312 * 119.95343 * 325.32118 * 11 10 8 25 25 C 1.48148 * 104.32340 * 39.58743 * 5 4 2 26 26 C 1.54288 * 110.33951 * 122.17057 * 2 1 3 27 27 H 1.08997 * 110.34288 * 359.90105 * 26 2 1 28 28 C 1.52994 * 110.34368 * 237.74301 * 26 2 1 29 29 O 1.42904 * 109.46934 * 175.00531 * 28 26 2 30 30 H 1.08998 * 109.47466 * 297.82953 * 1 2 3 31 31 H 1.08998 * 109.47230 * 177.82461 * 1 2 3 32 32 H 1.09002 * 109.47158 * 57.83227 * 1 2 3 33 33 H 1.08998 * 110.40602 * 336.04494 * 4 2 1 34 34 H 1.09000 * 110.40612 * 98.48059 * 4 2 1 35 35 H 0.97008 * 119.99877 * 354.88252 * 10 8 6 36 36 H 1.08001 * 119.78704 * 359.95932 * 12 11 10 37 37 H 1.07996 * 119.84020 * 180.02562 * 13 12 11 38 38 H 1.08008 * 120.05157 * 179.97438 * 14 13 12 39 39 H 0.97002 * 119.99609 * 179.97438 * 19 18 16 40 40 H 1.08005 * 120.15884 * 0.02562 * 24 11 10 41 41 H 1.09004 * 110.40694 * 201.63083 * 25 5 4 42 42 H 1.08999 * 110.40449 * 79.19840 * 25 5 4 43 43 H 1.09000 * 109.46773 * 294.99782 * 28 26 2 44 44 H 1.08993 * 109.47297 * 55.00256 * 28 26 2 45 45 H 0.96705 * 113.99365 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0667 -0.7734 -1.2237 5 7 3.2664 -1.4825 -0.7211 6 6 4.4424 -1.6679 -1.3527 7 8 5.3370 -2.2764 -0.8031 8 6 4.6443 -1.1253 -2.7295 9 8 3.7493 -0.5170 -3.2794 10 7 5.8201 -1.3110 -3.3614 11 6 5.9736 -0.8981 -4.6875 12 6 7.2026 -0.4094 -5.1262 13 6 7.3657 0.0020 -6.4383 14 6 6.3139 -0.0669 -7.3244 15 6 5.0665 -0.5582 -6.8959 16 6 3.9818 -0.6313 -7.8002 17 1 4.1677 -0.7123 -8.8610 18 6 2.6677 -0.5987 -7.3205 19 7 2.4251 -0.1794 -6.1052 20 14 1.2598 -1.1540 -8.4155 21 1 1.0293 -2.6088 -8.2259 22 1 0.0281 -0.4067 -8.0552 23 1 1.6026 -0.8882 -9.8357 24 6 4.9070 -0.9802 -5.5642 25 6 2.8801 -1.9416 0.6334 26 6 2.0663 -0.7703 1.2246 27 1 1.2397 -1.1471 1.8269 28 6 2.9690 0.1327 2.0674 29 8 3.3610 -0.5599 3.2543 30 1 -0.3634 0.4797 0.9088 31 1 -0.3633 -1.0269 -0.0390 32 1 -0.3633 0.5471 -0.8699 33 1 1.3234 -1.4877 -1.5777 34 1 2.3401 -0.0816 -2.0205 35 1 6.5599 -1.7314 -2.8956 36 1 8.0332 -0.3510 -4.4385 37 1 8.3225 0.3787 -6.7684 38 1 6.4459 0.2556 -8.3467 39 1 1.5141 -0.1565 -5.7729 40 1 3.9551 -1.3626 -5.2264 41 1 3.7671 -2.1313 1.2379 42 1 2.2638 -2.8384 0.5693 43 1 3.8560 0.3984 1.4921 44 1 2.4264 1.0385 2.3377 45 1 3.9364 -0.0462 3.8375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453718630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:16 Heat of formation + Delta-G solvation = -109.181069 kcal Electronic energy + Delta-G solvation = -28885.457085 eV Core-core repulsion = 24867.006294 eV Total energy + Delta-G solvation = -4018.450791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.04713 -40.61589 -39.32067 -38.73380 -37.34837 -36.16607 -35.04214 -33.93865 -31.47759 -31.47144 -30.36506 -27.89796 -27.33753 -27.20126 -25.21454 -23.29595 -22.90328 -22.01079 -20.99588 -20.75924 -19.60553 -18.69149 -18.10938 -17.98705 -17.50006 -17.39451 -16.66797 -16.54034 -16.30391 -16.14783 -15.68211 -15.34098 -14.97737 -14.79155 -14.56186 -14.35517 -14.10371 -13.95497 -13.83174 -13.47321 -13.44055 -13.12078 -13.03917 -12.85318 -12.62671 -12.56459 -12.48313 -12.22912 -12.04558 -11.73827 -11.71097 -11.56903 -11.52669 -11.13945 -10.94154 -10.87446 -10.37298 -10.01309 -9.30806 -8.84645 -8.46635 -6.29738 0.18705 0.96187 1.09849 1.25077 1.39014 1.51376 1.52399 2.14020 2.23546 2.44445 2.79851 3.14649 3.27405 3.45911 3.60313 3.75976 3.99139 4.12149 4.25605 4.38802 4.44848 4.47972 4.58830 4.62825 4.64915 4.68348 4.77074 4.80275 4.85974 4.93756 5.07144 5.10089 5.13154 5.19442 5.22958 5.28026 5.38564 5.44365 5.72122 5.84045 5.99575 6.06438 6.14926 6.32208 6.39457 6.61038 6.70724 6.84452 6.98110 7.03519 7.08434 8.40148 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.003733 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.785503 B = 7499.465194 C = 9237.052157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.084 0.916 4 C 0.086 3.914 5 N -0.591 5.591 6 C 0.533 3.467 7 O -0.547 6.547 8 C 0.485 3.515 9 O -0.486 6.486 10 N -0.635 5.635 11 C 0.137 3.863 12 C -0.258 4.258 13 C -0.076 4.076 14 C -0.253 4.253 15 C 0.088 3.912 16 C -0.500 4.500 17 H 0.076 0.924 18 C 0.033 3.967 19 N -0.792 5.792 20 Si 0.975 3.025 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.181 4.181 25 C 0.107 3.893 26 C -0.090 4.090 27 H 0.117 0.883 28 C 0.085 3.915 29 O -0.588 6.588 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.419 0.581 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.284 0.716 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.029 0.971 44 H 0.071 0.929 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 0.522 16.401 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.102 0.898 4 C -0.036 4.036 5 N -0.324 5.324 6 C 0.316 3.684 7 O -0.426 6.426 8 C 0.266 3.734 9 O -0.358 6.358 10 N -0.282 5.282 11 C 0.045 3.955 12 C -0.279 4.279 13 C -0.094 4.094 14 C -0.273 4.273 15 C 0.085 3.915 16 C -0.529 4.529 17 H 0.094 0.906 18 C -0.185 4.185 19 N -0.415 5.415 20 Si 0.796 3.204 21 H -0.192 1.192 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.203 4.203 25 C -0.014 4.014 26 C -0.109 4.109 27 H 0.135 0.865 28 C 0.007 3.993 29 O -0.396 6.396 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.257 0.743 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.318 0.201 16.202 17.053 hybrid contribution 0.303 0.066 -0.257 0.403 sum -5.015 0.268 15.945 16.717 Atomic orbital electron populations 1.21800 0.91614 1.02979 1.03083 1.22082 0.97921 0.99245 0.91769 0.89753 1.23115 0.85342 0.96712 0.98395 1.48812 1.12164 1.53382 1.18072 1.19549 0.82194 0.80729 0.85972 1.90710 1.42005 1.42384 1.67494 1.20427 0.83872 0.81890 0.87184 1.90892 1.40873 1.37850 1.66228 1.43017 1.14443 1.59002 1.11786 1.17746 0.95808 0.99867 0.82123 1.20460 0.96317 1.13543 0.97564 1.20712 0.97993 0.97978 0.92734 1.21238 0.95175 1.11137 0.99749 1.17849 0.92949 0.88267 0.92402 1.19775 0.91200 1.47178 0.94792 0.90624 1.26732 1.02473 0.92438 0.96809 1.69990 1.23194 1.31096 1.17248 0.85317 0.76791 0.78988 0.79284 1.19180 1.19218 1.18235 1.21231 0.98256 1.06800 0.93969 1.22667 0.99851 0.98113 0.80786 1.22216 0.98360 0.94786 0.95574 0.86525 1.22193 0.96859 0.94459 0.85756 1.86404 1.72004 1.46745 1.34473 0.90301 0.91594 0.92230 0.89976 0.89000 0.74291 0.85847 0.85170 0.88159 0.90510 0.86850 0.90330 0.89123 0.95249 0.91136 0.75291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.92 71.98 0.64 -1.26 16 2 C -0.09 -1.67 3.31 -9.88 -0.03 -1.70 16 3 H 0.08 1.57 7.71 -2.39 -0.02 1.55 16 4 C 0.09 2.28 6.15 86.53 0.53 2.82 16 5 N -0.59 -17.38 3.32 -809.61 -2.68 -20.06 16 6 C 0.53 19.08 7.98 87.24 0.70 19.78 16 7 O -0.55 -20.73 16.75 -3.27 -0.05 -20.79 16 8 C 0.49 20.01 7.59 87.24 0.66 20.68 16 9 O -0.49 -22.63 11.53 -3.35 -0.04 -22.67 16 10 N -0.64 -25.96 5.32 -304.98 -1.62 -27.58 16 11 C 0.14 6.49 6.25 38.17 0.24 6.73 16 12 C -0.26 -11.07 9.97 22.59 0.23 -10.84 16 13 C -0.08 -3.26 10.02 22.20 0.22 -3.04 16 14 C -0.25 -12.52 9.79 22.75 0.22 -12.29 16 15 C 0.09 4.89 5.56 -21.31 -0.12 4.77 16 16 C -0.50 -27.54 9.05 23.46 0.21 -27.33 16 17 H 0.08 4.01 7.90 -2.91 -0.02 3.99 16 18 C 0.03 1.70 5.16 85.25 0.44 2.14 16 19 N -0.79 -42.45 10.95 21.82 0.24 -42.21 16 20 Si 0.97 39.10 29.59 68.60 2.03 41.13 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 23 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 24 C -0.18 -9.83 7.28 22.86 0.17 -9.67 16 25 C 0.11 2.45 6.54 86.54 0.57 3.01 16 26 C -0.09 -1.56 2.98 -9.89 -0.03 -1.59 16 27 H 0.12 1.61 7.71 -2.39 -0.02 1.59 16 28 C 0.09 1.41 6.14 71.98 0.44 1.85 16 29 O -0.59 -9.78 13.32 -148.98 -1.98 -11.77 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.85 8.10 -2.39 -0.02 0.83 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.08 2.07 7.83 -2.39 -0.02 2.05 16 34 H 0.09 3.09 5.48 -2.39 -0.01 3.07 16 35 H 0.42 14.73 8.30 -92.70 -0.77 13.96 16 36 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 39 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 40 H 0.11 6.58 4.63 -2.91 -0.01 6.57 16 41 H 0.08 2.03 7.36 -2.38 -0.02 2.02 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.03 0.59 8.13 -2.39 -0.02 0.57 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.40 3.29 9.12 -74.05 -0.68 2.61 16 Total: -1.00 -69.08 372.09 0.57 -68.51 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -0.40 Total: 41.39 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 5.09 Total: -5.96 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -4.07 Total: -89.85 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -2.08 Total: -55.22 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -69.08 0.57 -68.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453718630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.675 kcal (2) G-P(sol) polarization free energy of solvation -69.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds