Wall clock time and date at job start Tue Mar 31 2020 17:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.71157 * 2 1 4 4 C 1.53296 * 109.68293 * 239.46215 * 2 1 3 5 5 H 1.09003 * 109.51555 * 172.60750 * 4 2 1 6 6 C 1.53001 * 109.51251 * 52.50613 * 4 2 1 7 7 O 1.42956 * 109.22429 * 292.58232 * 4 2 1 8 8 C 1.42964 * 114.16882 * 297.41578 * 7 4 2 9 9 C 1.53298 * 109.22184 * 62.57950 * 8 7 4 10 10 N 1.47152 * 108.38497 * 307.70390 * 9 8 7 11 11 C 1.34781 * 120.98146 * 230.55572 * 10 9 8 12 12 O 1.21356 * 120.00014 * 171.99867 * 11 10 9 13 13 C 1.49357 * 119.99888 * 351.99954 * 11 10 9 14 14 O 1.21382 * 119.99848 * 353.41904 * 13 11 10 15 15 N 1.34773 * 120.00017 * 173.41300 * 13 11 10 16 16 C 1.39741 * 120.00164 * 183.49133 * 15 13 11 17 17 C 1.39344 * 119.95508 * 323.99916 * 16 15 13 18 18 C 1.38468 * 120.42492 * 179.71922 * 17 16 15 19 19 C 1.37691 * 120.32619 * 0.54977 * 18 17 16 20 20 C 1.40744 * 119.89754 * 359.72264 * 19 18 17 21 21 C 1.41418 * 120.21059 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00123 * 211.40097 * 21 20 19 23 23 C 1.39930 * 119.99590 * 31.39944 * 21 20 19 24 24 N 1.30826 * 120.00330 * 7.66714 * 23 21 20 25 25 Si 1.86803 * 119.99834 * 187.66769 * 23 21 20 26 26 H 1.48494 * 109.47118 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46938 * 120.00086 * 25 23 21 28 28 H 1.48503 * 109.46991 * 239.99716 * 25 23 21 29 29 C 1.38302 * 119.95404 * 144.26157 * 16 15 13 30 30 H 1.09004 * 109.47098 * 299.46321 * 1 2 3 31 31 H 1.08996 * 109.47213 * 59.45963 * 1 2 3 32 32 H 1.08996 * 109.47321 * 179.46350 * 1 2 3 33 33 H 1.09001 * 109.47161 * 59.99966 * 6 4 2 34 34 H 1.08997 * 109.47115 * 180.02562 * 6 4 2 35 35 H 1.09004 * 109.46760 * 300.00427 * 6 4 2 36 36 H 1.09000 * 109.51257 * 302.66082 * 8 7 4 37 37 H 1.08993 * 109.51672 * 182.50337 * 8 7 4 38 38 H 1.09001 * 109.68013 * 67.42419 * 9 8 7 39 39 H 1.08998 * 109.68676 * 187.94238 * 9 8 7 40 40 H 0.97005 * 119.99926 * 3.50151 * 15 13 11 41 41 H 1.08005 * 119.78370 * 359.96859 * 17 16 15 42 42 H 1.08003 * 119.84011 * 180.27303 * 18 17 16 43 43 H 1.08003 * 120.05169 * 179.70480 * 19 18 17 44 44 H 0.96997 * 120.00382 * 179.97438 * 24 23 21 45 45 H 1.07999 * 120.16101 * 0.03322 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0463 -0.7334 -1.2432 5 1 3.1282 -0.6194 -1.3101 6 6 1.3919 -0.1426 -2.4937 7 8 1.7167 -2.1208 -1.1420 8 6 2.3259 -2.7878 -0.0339 9 6 1.8240 -2.1596 1.2713 10 7 2.0255 -0.7041 1.1934 11 6 2.6461 -0.0355 2.1856 12 8 2.9328 1.1349 2.0419 13 6 2.9811 -0.7351 3.4619 14 8 2.5902 -1.8682 3.6536 15 7 3.7174 -0.1084 4.4008 16 6 4.0926 -0.7876 5.5630 17 6 3.2202 -1.7052 6.1449 18 6 3.5842 -2.3879 7.2932 19 6 4.8089 -2.1589 7.8795 20 6 5.6984 -1.2309 7.3064 21 6 6.9577 -0.9901 7.9032 22 1 7.4125 -0.0134 7.8293 23 6 7.6144 -2.0176 8.5897 24 7 7.1398 -3.2362 8.5533 25 14 9.1688 -1.6491 9.5580 26 1 9.4942 -0.2050 9.4411 27 1 8.9553 -1.9938 10.9866 28 1 10.2920 -2.4557 9.0167 29 6 5.3270 -0.5442 6.1371 30 1 -0.3633 0.5055 0.8948 31 1 -0.3633 0.5222 -0.8851 32 1 -0.3634 -1.0276 -0.0096 33 1 1.6399 0.9162 -2.5677 34 1 1.7591 -0.6648 -3.3771 35 1 0.3101 -0.2586 -2.4268 36 1 3.4090 -2.6819 -0.0959 37 1 2.0609 -3.8448 -0.0547 38 1 0.7636 -2.3771 1.3993 39 1 2.3858 -2.5640 2.1132 40 1 3.9869 0.8142 4.2698 41 1 2.2555 -1.8880 5.6950 42 1 2.9025 -3.1003 7.7339 43 1 5.0864 -2.6904 8.7778 44 1 7.5952 -3.9484 9.0289 45 1 6.0021 0.1703 5.6897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453720764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:32 Heat of formation + Delta-G solvation = -72.759925 kcal Electronic energy + Delta-G solvation = -28506.797828 eV Core-core repulsion = 24489.926377 eV Total energy + Delta-G solvation = -4016.871452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.18682 -39.70320 -38.35180 -37.30450 -35.43670 -34.54391 -33.85025 -33.09107 -29.91331 -29.43228 -29.02686 -28.55937 -25.78576 -25.28374 -23.96948 -23.52072 -21.46449 -20.99992 -20.03907 -19.34469 -17.96066 -17.56977 -17.13748 -16.50472 -16.35706 -15.97076 -15.55404 -15.32648 -15.11196 -14.83792 -14.62782 -14.23485 -14.01751 -13.50233 -13.39256 -13.11365 -12.97528 -12.95528 -12.61467 -12.32666 -12.26371 -11.95398 -11.92972 -11.72717 -11.36495 -11.26374 -11.21695 -11.17294 -11.00974 -10.73943 -10.48999 -10.35116 -10.12853 -9.68350 -9.45394 -9.24167 -8.89883 -8.76875 -7.51975 -7.07919 -6.71224 -4.44703 1.38847 2.23684 2.73574 2.77063 3.06899 3.11704 3.14579 3.36933 3.43676 3.56116 3.93042 4.28449 4.48902 4.59001 4.63808 4.73116 4.80748 4.96476 5.01329 5.08193 5.29284 5.30261 5.42290 5.52608 5.55906 5.56365 5.60611 5.78087 5.84220 5.96999 6.11176 6.17464 6.42406 6.56971 6.76741 6.83287 6.88705 6.95589 6.96790 7.19861 7.39210 7.44697 7.64557 7.86137 7.96700 7.99190 8.16284 8.31418 8.57281 8.84766 8.87114 10.22497 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.002413 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.425435 B =11599.055301 C =11673.400352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.104 3.896 3 H 0.108 0.892 4 C 0.080 3.920 5 H 0.063 0.937 6 C -0.146 4.146 7 O -0.377 6.377 8 C 0.047 3.953 9 C 0.039 3.961 10 N -0.584 5.584 11 C 0.514 3.486 12 O -0.523 6.523 13 C 0.500 3.500 14 O -0.498 6.498 15 N -0.627 5.627 16 C 0.135 3.865 17 C -0.215 4.215 18 C -0.100 4.100 19 C -0.151 4.151 20 C 0.120 3.880 21 C -0.465 4.465 22 H 0.078 0.922 23 C 0.073 3.927 24 N -0.805 5.805 25 Si 0.912 3.088 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.275 1.275 29 C -0.229 4.229 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.413 0.587 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.279 0.721 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 3.093 -16.037 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 H 0.126 0.874 4 C 0.021 3.979 5 H 0.081 0.919 6 C -0.203 4.203 7 O -0.296 6.296 8 C -0.030 4.030 9 C -0.082 4.082 10 N -0.319 5.319 11 C 0.297 3.703 12 O -0.399 6.399 13 C 0.281 3.719 14 O -0.375 6.375 15 N -0.271 5.271 16 C 0.044 3.956 17 C -0.236 4.236 18 C -0.119 4.119 19 C -0.171 4.171 20 C 0.117 3.883 21 C -0.496 4.496 22 H 0.096 0.904 23 C -0.143 4.143 24 N -0.432 5.432 25 Si 0.737 3.263 26 H -0.185 1.185 27 H -0.198 1.198 28 H -0.200 1.200 29 C -0.250 4.250 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.166 0.834 40 H 0.249 0.751 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.777 2.609 -16.039 18.964 hybrid contribution 1.038 0.530 0.505 1.270 sum -8.739 3.139 -15.534 18.098 Atomic orbital electron populations 1.22088 0.93815 1.03173 1.02484 1.22004 0.95503 0.98107 0.84240 0.87401 1.22442 0.98897 0.82113 0.94398 0.91885 1.21835 1.01945 1.00624 0.95890 1.87938 1.71992 1.21431 1.48212 1.23075 0.97355 0.97348 0.85205 1.23486 1.04357 0.78718 1.01657 1.48037 1.56202 1.09217 1.18440 1.20276 0.78449 0.86751 0.84795 1.90732 1.52015 1.16276 1.80843 1.19948 0.80716 0.86485 0.84702 1.90533 1.51494 1.17718 1.77765 1.43177 1.50077 1.16177 1.17648 1.17478 0.94571 0.97511 0.86005 1.20444 0.99660 1.03824 0.99680 1.20632 0.96833 0.98779 0.95696 1.21491 0.92348 1.02039 1.01194 1.17406 0.92373 0.89770 0.88780 1.19532 1.02400 0.97952 1.29702 0.90430 1.25864 0.99197 0.94453 0.94810 1.69781 1.38259 1.00712 1.34409 0.86196 0.80854 0.79753 0.79493 1.18536 1.19825 1.20025 1.20854 0.94886 1.09262 1.00000 0.92276 0.90762 0.91448 0.90742 0.91420 0.91061 0.92659 0.87298 0.90404 0.83427 0.75108 0.87568 0.88728 0.85996 0.91001 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.64 37.15 0.32 -1.11 16 2 C 0.10 1.11 2.87 -67.42 -0.19 0.92 16 3 H 0.11 1.20 7.06 -51.93 -0.37 0.84 16 4 C 0.08 0.77 3.10 -26.58 -0.08 0.68 16 5 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 6 C -0.15 -1.01 9.01 37.16 0.33 -0.67 16 7 O -0.38 -4.03 10.01 -35.23 -0.35 -4.38 16 8 C 0.05 0.48 6.99 37.31 0.26 0.74 16 9 C 0.04 0.47 5.73 -3.53 -0.02 0.45 16 10 N -0.58 -7.53 2.71 -165.29 -0.45 -7.98 16 11 C 0.51 7.91 7.75 -11.63 -0.09 7.82 16 12 O -0.52 -8.67 15.97 5.49 0.09 -8.59 16 13 C 0.50 8.70 7.57 -11.63 -0.09 8.61 16 14 O -0.50 -9.31 10.72 5.47 0.06 -9.25 16 15 N -0.63 -11.49 5.32 -10.34 -0.05 -11.54 16 16 C 0.14 2.97 6.26 -83.82 -0.52 2.45 16 17 C -0.22 -4.86 8.69 -39.09 -0.34 -5.20 16 18 C -0.10 -2.33 10.01 -39.70 -0.40 -2.73 16 19 C -0.15 -3.83 8.64 -38.83 -0.34 -4.17 16 20 C 0.12 3.10 5.53 -106.85 -0.59 2.51 16 21 C -0.47 -12.03 9.05 -37.74 -0.34 -12.37 16 22 H 0.08 1.93 7.86 -52.49 -0.41 1.51 16 23 C 0.07 1.80 5.29 -17.35 -0.09 1.71 16 24 N -0.81 -20.60 10.86 55.55 0.60 -19.99 16 25 Si 0.91 18.50 29.57 -169.99 -5.03 13.47 16 26 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 28 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 29 C -0.23 -5.39 9.71 -38.67 -0.38 -5.77 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.52 6.42 -51.93 -0.33 0.19 16 32 H 0.07 0.64 7.23 -51.93 -0.38 0.27 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.47 6.38 -51.93 -0.33 0.14 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.87 7.67 -51.93 -0.40 0.48 16 39 H 0.15 2.06 4.50 -53.94 -0.24 1.82 16 40 H 0.41 6.71 8.30 -40.82 -0.34 6.37 16 41 H 0.11 2.32 6.31 -52.48 -0.33 1.99 16 42 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 43 H 0.12 3.19 6.31 -52.48 -0.33 2.86 16 44 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 45 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -28.81 362.61 -8.20 -37.01 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.98 Total: 11.92 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.56 Total: -6.13 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.10 Total: -39.52 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.21 Total: -22.22 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.81 -8.20 -37.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453720764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.748 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds