Wall clock time and date at job start Tue Mar 31 2020 17:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.71157 * 2 1 4 4 C 1.53296 * 109.68293 * 239.46215 * 2 1 3 5 5 H 1.09003 * 109.51555 * 172.60750 * 4 2 1 6 6 C 1.53001 * 109.51251 * 52.50613 * 4 2 1 7 7 O 1.42956 * 109.22429 * 292.58232 * 4 2 1 8 8 C 1.42964 * 114.16882 * 297.41578 * 7 4 2 9 9 C 1.53298 * 109.22184 * 62.57950 * 8 7 4 10 10 N 1.47152 * 108.38497 * 307.70390 * 9 8 7 11 11 C 1.34781 * 120.98146 * 230.55572 * 10 9 8 12 12 O 1.21356 * 120.00014 * 171.99867 * 11 10 9 13 13 C 1.49357 * 119.99888 * 351.99954 * 11 10 9 14 14 O 1.21382 * 119.99848 * 353.41904 * 13 11 10 15 15 N 1.34773 * 120.00017 * 173.41300 * 13 11 10 16 16 C 1.39741 * 120.00164 * 183.49133 * 15 13 11 17 17 C 1.39344 * 119.95508 * 323.99916 * 16 15 13 18 18 C 1.38468 * 120.42492 * 179.71922 * 17 16 15 19 19 C 1.37691 * 120.32619 * 0.54977 * 18 17 16 20 20 C 1.40744 * 119.89754 * 359.72264 * 19 18 17 21 21 C 1.41418 * 120.21059 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00123 * 211.40097 * 21 20 19 23 23 C 1.39930 * 119.99590 * 31.39944 * 21 20 19 24 24 N 1.30826 * 120.00330 * 7.66714 * 23 21 20 25 25 Si 1.86803 * 119.99834 * 187.66769 * 23 21 20 26 26 H 1.48494 * 109.47118 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46938 * 120.00086 * 25 23 21 28 28 H 1.48503 * 109.46991 * 239.99716 * 25 23 21 29 29 C 1.38302 * 119.95404 * 144.26157 * 16 15 13 30 30 H 1.09004 * 109.47098 * 299.46321 * 1 2 3 31 31 H 1.08996 * 109.47213 * 59.45963 * 1 2 3 32 32 H 1.08996 * 109.47321 * 179.46350 * 1 2 3 33 33 H 1.09001 * 109.47161 * 59.99966 * 6 4 2 34 34 H 1.08997 * 109.47115 * 180.02562 * 6 4 2 35 35 H 1.09004 * 109.46760 * 300.00427 * 6 4 2 36 36 H 1.09000 * 109.51257 * 302.66082 * 8 7 4 37 37 H 1.08993 * 109.51672 * 182.50337 * 8 7 4 38 38 H 1.09001 * 109.68013 * 67.42419 * 9 8 7 39 39 H 1.08998 * 109.68676 * 187.94238 * 9 8 7 40 40 H 0.97005 * 119.99926 * 3.50151 * 15 13 11 41 41 H 1.08005 * 119.78370 * 359.96859 * 17 16 15 42 42 H 1.08003 * 119.84011 * 180.27303 * 18 17 16 43 43 H 1.08003 * 120.05169 * 179.70480 * 19 18 17 44 44 H 0.96997 * 120.00382 * 179.97438 * 24 23 21 45 45 H 1.07999 * 120.16101 * 0.03322 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0463 -0.7334 -1.2432 5 1 3.1282 -0.6194 -1.3101 6 6 1.3919 -0.1426 -2.4937 7 8 1.7167 -2.1208 -1.1420 8 6 2.3259 -2.7878 -0.0339 9 6 1.8240 -2.1596 1.2713 10 7 2.0255 -0.7041 1.1934 11 6 2.6461 -0.0355 2.1856 12 8 2.9328 1.1349 2.0419 13 6 2.9811 -0.7351 3.4619 14 8 2.5902 -1.8682 3.6536 15 7 3.7174 -0.1084 4.4008 16 6 4.0926 -0.7876 5.5630 17 6 3.2202 -1.7052 6.1449 18 6 3.5842 -2.3879 7.2932 19 6 4.8089 -2.1589 7.8795 20 6 5.6984 -1.2309 7.3064 21 6 6.9577 -0.9901 7.9032 22 1 7.4125 -0.0134 7.8293 23 6 7.6144 -2.0176 8.5897 24 7 7.1398 -3.2362 8.5533 25 14 9.1688 -1.6491 9.5580 26 1 9.4942 -0.2050 9.4411 27 1 8.9553 -1.9938 10.9866 28 1 10.2920 -2.4557 9.0167 29 6 5.3270 -0.5442 6.1371 30 1 -0.3633 0.5055 0.8948 31 1 -0.3633 0.5222 -0.8851 32 1 -0.3634 -1.0276 -0.0096 33 1 1.6399 0.9162 -2.5677 34 1 1.7591 -0.6648 -3.3771 35 1 0.3101 -0.2586 -2.4268 36 1 3.4090 -2.6819 -0.0959 37 1 2.0609 -3.8448 -0.0547 38 1 0.7636 -2.3771 1.3993 39 1 2.3858 -2.5640 2.1132 40 1 3.9869 0.8142 4.2698 41 1 2.2555 -1.8880 5.6950 42 1 2.9025 -3.1003 7.7339 43 1 5.0864 -2.6904 8.7778 44 1 7.5952 -3.9484 9.0289 45 1 6.0021 0.1703 5.6897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453720764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:31 Heat of formation + Delta-G solvation = -90.060420 kcal Electronic energy + Delta-G solvation = -28507.548034 eV Core-core repulsion = 24489.926377 eV Total energy + Delta-G solvation = -4017.621657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.40642 -40.92311 -39.59933 -38.96119 -36.71650 -35.87853 -34.93482 -34.65815 -31.79444 -30.55112 -30.04451 -29.82019 -27.26910 -26.76888 -25.06131 -24.43491 -23.07917 -22.64876 -21.45258 -20.42894 -19.51481 -18.96636 -18.32388 -17.52377 -17.45709 -17.35060 -16.96107 -16.78188 -16.48861 -16.25750 -15.89182 -15.42545 -15.31703 -14.88542 -14.68670 -14.38896 -14.28712 -14.08564 -13.80755 -13.58634 -13.23098 -13.10192 -12.99554 -12.87353 -12.82638 -12.71752 -12.69367 -12.46118 -12.17034 -12.01637 -11.90984 -11.59386 -11.46854 -11.24216 -11.22492 -10.96235 -10.29325 -9.79443 -9.40414 -8.88563 -8.55978 -6.40139 0.02784 0.91471 0.93631 1.14068 1.40924 1.50455 1.55359 1.97944 2.21479 2.26568 2.70447 2.76754 3.11137 3.51812 3.65465 3.78083 3.91716 3.97541 4.11732 4.27202 4.30440 4.37788 4.45900 4.59311 4.65020 4.71263 4.76789 4.80324 4.88207 4.96093 4.97891 5.00016 5.03671 5.08875 5.16826 5.18868 5.32027 5.34738 5.65518 5.68534 5.82746 6.01289 6.06888 6.09686 6.12969 6.36278 6.54071 6.63961 6.81019 6.93193 6.99039 8.39538 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.002413 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.425435 B =11599.055301 C =11673.400352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 H 0.104 0.896 4 C 0.079 3.921 5 H 0.056 0.944 6 C -0.141 4.141 7 O -0.381 6.381 8 C 0.051 3.949 9 C 0.040 3.960 10 N -0.577 5.577 11 C 0.518 3.482 12 O -0.538 6.538 13 C 0.500 3.500 14 O -0.510 6.510 15 N -0.627 5.627 16 C 0.147 3.853 17 C -0.220 4.220 18 C -0.099 4.099 19 C -0.176 4.176 20 C 0.092 3.908 21 C -0.497 4.497 22 H 0.078 0.922 23 C 0.031 3.969 24 N -0.836 5.836 25 Si 0.986 3.014 26 H -0.258 1.258 27 H -0.265 1.265 28 H -0.269 1.269 29 C -0.240 4.240 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.422 0.578 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.286 0.714 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 3.422 -17.734 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.002 4.002 3 H 0.122 0.878 4 C 0.020 3.980 5 H 0.075 0.925 6 C -0.199 4.199 7 O -0.300 6.300 8 C -0.026 4.026 9 C -0.082 4.082 10 N -0.310 5.310 11 C 0.301 3.699 12 O -0.415 6.415 13 C 0.283 3.717 14 O -0.387 6.387 15 N -0.273 5.273 16 C 0.054 3.946 17 C -0.241 4.241 18 C -0.118 4.118 19 C -0.196 4.196 20 C 0.090 3.910 21 C -0.527 4.527 22 H 0.096 0.904 23 C -0.182 4.182 24 N -0.463 5.463 25 Si 0.807 3.193 26 H -0.181 1.181 27 H -0.190 1.190 28 H -0.194 1.194 29 C -0.261 4.261 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.146 0.854 40 H 0.261 0.739 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.378 2.935 -17.785 20.800 hybrid contribution 1.091 0.396 0.899 1.468 sum -9.287 3.331 -16.886 19.558 Atomic orbital electron populations 1.22069 0.92286 1.03267 1.03316 1.22277 0.96637 0.97830 0.83499 0.87777 1.22572 0.98857 0.81617 0.94931 0.92549 1.21857 1.02124 1.01397 0.94473 1.87947 1.72027 1.21980 1.48058 1.23101 0.97077 0.98310 0.84129 1.23465 1.04617 0.78047 1.02045 1.48187 1.54788 1.09786 1.18282 1.19804 0.79168 0.86461 0.84514 1.90730 1.53136 1.16656 1.81014 1.20382 0.79775 0.86325 0.85198 1.90548 1.51646 1.18300 1.78234 1.43100 1.50605 1.16603 1.16951 1.17463 0.93728 0.96759 0.86601 1.20616 1.00099 1.03874 0.99487 1.20870 0.96397 0.98839 0.95681 1.21423 0.93514 1.03145 1.01523 1.17757 0.92905 0.90580 0.89787 1.19797 1.03036 0.98536 1.31370 0.90384 1.26730 1.02348 0.93921 0.95209 1.69850 1.39814 1.01618 1.35052 0.85095 0.76582 0.79619 0.78009 1.18139 1.19000 1.19378 1.20981 0.95830 1.09502 0.99813 0.93179 0.88197 0.91686 0.89219 0.90945 0.90338 0.93045 0.85188 0.89472 0.85377 0.73945 0.86642 0.86563 0.87539 0.90320 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.64 71.98 0.62 -1.77 16 2 C 0.10 1.93 2.87 44.96 0.13 2.06 16 3 H 0.10 2.14 7.06 -2.39 -0.02 2.13 16 4 C 0.08 1.33 3.10 30.69 0.10 1.43 16 5 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 6 C -0.14 -1.54 9.01 71.98 0.65 -0.89 16 7 O -0.38 -7.28 10.01 -148.98 -1.49 -8.77 16 8 C 0.05 0.95 6.99 72.08 0.50 1.45 16 9 C 0.04 0.89 5.73 86.35 0.50 1.38 16 10 N -0.58 -14.17 2.71 -795.20 -2.16 -16.32 16 11 C 0.52 15.53 7.75 87.24 0.68 16.21 16 12 O -0.54 -17.40 15.97 -3.26 -0.05 -17.45 16 13 C 0.50 17.18 7.57 87.24 0.66 17.84 16 14 O -0.51 -18.84 10.72 -3.35 -0.04 -18.87 16 15 N -0.63 -22.80 5.32 -304.98 -1.62 -24.42 16 16 C 0.15 6.46 6.26 38.16 0.24 6.70 16 17 C -0.22 -9.90 8.69 22.59 0.20 -9.71 16 18 C -0.10 -4.64 10.01 22.20 0.22 -4.41 16 19 C -0.18 -9.21 8.64 22.75 0.20 -9.02 16 20 C 0.09 4.93 5.53 -21.31 -0.12 4.81 16 21 C -0.50 -26.37 9.05 23.46 0.21 -26.16 16 22 H 0.08 3.97 7.86 -2.91 -0.02 3.95 16 23 C 0.03 1.56 5.29 85.25 0.45 2.01 16 24 N -0.84 -43.69 10.86 21.82 0.24 -43.45 16 25 Si 0.99 38.07 29.57 68.60 2.03 40.10 16 26 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 27 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 28 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 29 C -0.24 -11.51 9.71 22.86 0.22 -11.29 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.10 1.07 6.42 -2.39 -0.02 1.05 16 32 H 0.06 1.07 7.23 -2.39 -0.02 1.06 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.76 6.38 -2.39 -0.02 0.74 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.09 1.81 7.67 -2.39 -0.02 1.80 16 39 H 0.13 3.49 4.50 -34.28 -0.15 3.34 16 40 H 0.42 13.60 8.30 -92.70 -0.77 12.83 16 41 H 0.12 4.96 6.31 -2.91 -0.02 4.94 16 42 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 43 H 0.11 5.81 6.31 -2.91 -0.02 5.79 16 44 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 45 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -62.33 362.61 2.48 -59.85 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: 0.12 Total: 38.69 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 5.45 Total: -9.35 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -3.54 Total: -84.20 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.58 Total: -45.09 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -62.33 2.48 -59.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453720764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.208 kcal (2) G-P(sol) polarization free energy of solvation -62.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds