Wall clock time and date at job start Tue Mar 31 2020 17:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.50727 * 2 1 4 4 O 1.42964 * 109.51089 * 120.09866 * 2 1 3 5 5 C 1.42966 * 114.16190 * 182.50479 * 4 2 1 6 6 C 1.53293 * 109.22438 * 297.42084 * 5 4 2 7 7 N 1.47152 * 108.38620 * 52.30338 * 6 5 4 8 8 C 1.34771 * 120.98322 * 129.44208 * 7 6 5 9 9 O 1.21360 * 120.00309 * 187.80841 * 8 7 6 10 10 C 1.49351 * 120.00090 * 7.80705 * 8 7 6 11 11 O 1.21373 * 120.00125 * 6.64433 * 10 8 7 12 12 N 1.34775 * 120.00272 * 186.91875 * 10 8 7 13 13 C 1.39736 * 120.00342 * 183.40050 * 12 10 8 14 14 C 1.39352 * 119.95508 * 144.24240 * 13 12 10 15 15 C 1.38469 * 120.42331 * 180.02562 * 14 13 12 16 16 C 1.37692 * 120.32987 * 359.97438 * 15 14 13 17 17 C 1.40743 * 119.89616 * 0.02562 * 16 15 14 18 18 C 1.41416 * 120.20869 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00297 * 144.52783 * 18 17 16 20 20 C 1.39931 * 119.99585 * 324.53016 * 18 17 16 21 21 N 1.30833 * 120.00406 * 358.55479 * 20 18 17 22 22 Si 1.86800 * 119.99961 * 178.55533 * 20 18 17 23 23 H 1.48494 * 109.47374 * 94.99246 * 22 20 18 24 24 H 1.48502 * 109.46929 * 214.99536 * 22 20 18 25 25 H 1.48500 * 109.47020 * 334.98921 * 22 20 18 26 26 C 1.38305 * 119.95685 * 323.96926 * 13 12 10 27 27 C 1.47154 * 118.03381 * 309.71596 * 7 6 5 28 28 H 1.09001 * 109.68062 * 170.00303 * 27 7 6 29 29 C 1.53002 * 109.68255 * 290.56253 * 27 7 6 30 30 H 1.09006 * 109.46963 * 299.89894 * 1 2 3 31 31 H 1.08994 * 109.47334 * 59.89924 * 1 2 3 32 32 H 1.09003 * 109.46841 * 179.90115 * 1 2 3 33 33 H 1.09001 * 109.51067 * 177.49578 * 5 4 2 34 34 H 1.09004 * 109.55387 * 57.37475 * 5 4 2 35 35 H 1.08997 * 109.68246 * 292.57962 * 6 5 4 36 36 H 1.08996 * 109.71065 * 172.04436 * 6 5 4 37 37 H 0.97001 * 119.99944 * 3.40088 * 12 10 8 38 38 H 1.07998 * 119.78422 * 359.97438 * 14 13 12 39 39 H 1.08002 * 119.83130 * 179.97438 * 15 14 13 40 40 H 1.08004 * 120.05159 * 179.97438 * 16 15 14 41 41 H 0.96998 * 120.00311 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.15864 * 0.02562 * 26 13 12 43 43 H 1.08994 * 109.47080 * 59.99682 * 29 27 7 44 44 H 1.09001 * 109.46870 * 180.02562 * 29 27 7 45 45 H 1.08999 * 109.46501 * 299.99471 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 8 2.0075 -0.6758 1.1659 5 6 3.4313 -0.6848 1.2951 6 6 4.0407 -1.4457 0.1120 7 7 3.5012 -0.8767 -1.1332 8 6 4.3193 -0.5043 -2.1374 9 8 3.8720 0.0913 -3.0955 10 6 5.7766 -0.8246 -2.0711 11 8 6.2044 -1.5230 -1.1753 12 7 6.6175 -0.3336 -3.0029 13 6 7.9684 -0.6905 -2.9824 14 6 8.6606 -0.8634 -4.1794 15 6 9.9992 -1.2175 -4.1705 16 6 10.6616 -1.4022 -2.9776 17 6 9.9758 -1.2311 -1.7605 18 6 10.6498 -1.4185 -0.5315 19 1 10.4047 -0.7994 0.3187 20 6 11.6344 -2.4063 -0.4171 21 7 11.9115 -3.1752 -1.4388 22 14 12.5530 -2.6272 1.1943 23 1 11.8958 -3.6894 1.9972 24 1 13.9582 -3.0168 0.9135 25 1 12.5355 -1.3508 1.9530 26 6 8.6181 -0.8660 -1.7741 27 6 2.0424 -0.7206 -1.2472 28 1 1.8043 -0.1324 -2.1334 29 6 1.3832 -2.0975 -1.3492 30 1 -0.3633 0.5123 0.8909 31 1 -0.3633 0.5154 -0.8890 32 1 -0.3633 -1.0277 -0.0018 33 1 3.7091 -1.1775 2.2269 34 1 3.8037 0.3396 1.2999 35 1 3.7757 -2.5008 0.1785 36 1 5.1252 -1.3380 0.1251 37 1 6.2851 0.2676 -3.6877 38 1 8.1494 -0.7212 -5.1201 39 1 10.5263 -1.3495 -5.1039 40 1 11.7057 -1.6788 -2.9758 41 1 12.5937 -3.8601 -1.3594 42 1 8.0838 -0.7283 -0.8457 43 1 1.6160 -2.6787 -0.4570 44 1 0.3031 -1.9779 -1.4339 45 1 1.7610 -2.6168 -2.2299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453720766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:37 Heat of formation + Delta-G solvation = -71.353798 kcal Electronic energy + Delta-G solvation = -28775.699693 eV Core-core repulsion = 24758.889216 eV Total energy + Delta-G solvation = -4016.810477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.16275 -39.68298 -38.32960 -37.26754 -35.40392 -34.53143 -33.85248 -33.02090 -29.88773 -29.39639 -28.99094 -28.51229 -25.72908 -25.33811 -23.94067 -23.49174 -21.50162 -20.90811 -20.00999 -19.31500 -18.02699 -17.42334 -17.12288 -16.46385 -16.31685 -15.89484 -15.54264 -15.34305 -15.09115 -14.76021 -14.62655 -14.17466 -14.05290 -13.46363 -13.34661 -13.09633 -12.97566 -12.93435 -12.58400 -12.33199 -12.18517 -11.93483 -11.89061 -11.79042 -11.37666 -11.26740 -11.17250 -11.09104 -10.74250 -10.64994 -10.55442 -10.32378 -10.12141 -9.89261 -9.31609 -9.11830 -8.93247 -8.74161 -7.46010 -7.03803 -6.65352 -4.41757 1.42867 2.26630 2.71702 2.84652 3.09510 3.14156 3.15700 3.38982 3.44131 3.61255 3.97862 4.32101 4.51838 4.61727 4.67465 4.75991 4.84129 4.99618 5.04409 5.11203 5.31553 5.33652 5.45932 5.55191 5.58379 5.59153 5.64209 5.82492 5.88788 6.01341 6.13120 6.16541 6.28143 6.58850 6.76440 6.91187 6.91993 6.98123 7.00719 7.21939 7.33599 7.60229 7.67079 7.83506 7.99696 8.01965 8.12702 8.39774 8.60974 8.89136 8.91253 10.29396 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.003048 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.549927 B = 9183.238181 C =10546.422198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 H 0.062 0.938 4 O -0.377 6.377 5 C 0.048 3.952 6 C 0.038 3.962 7 N -0.583 5.583 8 C 0.515 3.485 9 O -0.525 6.525 10 C 0.497 3.503 11 O -0.489 6.489 12 N -0.629 5.629 13 C 0.133 3.867 14 C -0.242 4.242 15 C -0.098 4.098 16 C -0.153 4.153 17 C 0.117 3.883 18 C -0.463 4.463 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.811 5.811 22 Si 0.914 3.086 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.196 4.196 27 C 0.104 3.896 28 H 0.108 0.892 29 C -0.159 4.159 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.150 0.850 37 H 0.411 0.589 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.278 0.722 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.234 4.164 2.229 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.022 3.978 3 H 0.080 0.920 4 O -0.296 6.296 5 C -0.029 4.029 6 C -0.083 4.083 7 N -0.318 5.318 8 C 0.298 3.702 9 O -0.401 6.401 10 C 0.279 3.721 11 O -0.365 6.365 12 N -0.274 5.274 13 C 0.041 3.959 14 C -0.263 4.263 15 C -0.117 4.117 16 C -0.172 4.172 17 C 0.114 3.886 18 C -0.493 4.493 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.438 5.438 22 Si 0.739 3.261 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.217 4.217 27 C 0.001 3.999 28 H 0.126 0.874 29 C -0.216 4.216 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.167 0.833 37 H 0.247 0.753 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.141 0.859 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.156 3.696 2.417 17.716 hybrid contribution 0.405 0.000 0.089 0.414 sum -16.752 3.696 2.505 17.337 Atomic orbital electron populations 1.21837 0.92146 1.03488 1.02819 1.22357 0.95641 0.95089 0.84740 0.91966 1.87945 1.21369 1.77343 1.42903 1.23077 0.80621 1.00365 0.98879 1.23505 1.04738 0.98180 0.81873 1.48041 1.06150 1.61247 1.16343 1.20271 0.87661 0.79401 0.82860 1.90722 1.77143 1.39483 1.32761 1.19962 0.86582 0.81833 0.83757 1.90583 1.76893 1.36807 1.32221 1.43132 1.07975 1.46001 1.30264 1.17486 0.80192 1.03061 0.95119 1.20166 0.96077 1.15780 0.94294 1.20538 0.93556 1.00236 0.97334 1.21500 1.00380 1.04125 0.91225 1.17528 0.89610 0.87905 0.93559 1.19485 1.16687 1.15981 0.97183 0.90555 1.25840 0.95586 0.94762 0.98129 1.69760 1.27317 1.15893 1.30802 0.86207 0.78658 0.79495 0.81752 1.19621 1.20257 1.18639 1.21180 0.94484 1.11064 0.94940 1.21915 0.79149 0.98634 1.00169 0.87433 1.22102 1.00700 0.95988 1.02846 0.91423 0.90774 0.91031 0.87233 0.92679 0.90305 0.83344 0.75325 0.88854 0.88654 0.85941 0.91094 0.87028 0.91405 0.90771 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.00 37.16 0.33 -0.70 16 2 C 0.08 0.78 3.08 -26.79 -0.08 0.70 16 3 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 4 O -0.38 -4.16 10.01 -35.23 -0.35 -4.52 16 5 C 0.05 0.51 6.98 37.31 0.26 0.77 16 6 C 0.04 0.48 5.75 -3.53 -0.02 0.46 16 7 N -0.58 -7.79 2.72 -165.54 -0.45 -8.24 16 8 C 0.51 8.09 7.75 -11.63 -0.09 7.99 16 9 O -0.52 -8.74 15.98 5.49 0.09 -8.66 16 10 C 0.50 8.93 7.57 -11.63 -0.09 8.84 16 11 O -0.49 -9.78 10.72 5.48 0.06 -9.72 16 12 N -0.63 -11.53 5.31 -10.34 -0.05 -11.58 16 13 C 0.13 2.91 6.27 -83.82 -0.53 2.38 16 14 C -0.24 -5.19 9.97 -39.08 -0.39 -5.58 16 15 C -0.10 -2.20 10.01 -39.70 -0.40 -2.60 16 16 C -0.15 -3.88 8.63 -38.84 -0.34 -4.21 16 17 C 0.12 3.09 5.51 -106.85 -0.59 2.50 16 18 C -0.46 -12.25 9.04 -37.74 -0.34 -12.59 16 19 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 20 C 0.07 1.82 5.36 -17.34 -0.09 1.73 16 21 N -0.81 -21.08 10.86 55.55 0.60 -20.48 16 22 Si 0.91 18.92 29.56 -169.99 -5.02 13.90 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 26 C -0.20 -4.80 8.42 -38.67 -0.33 -5.13 16 27 C 0.10 1.15 2.86 -67.64 -0.19 0.95 16 28 H 0.11 1.22 7.06 -51.93 -0.37 0.85 16 29 C -0.16 -1.53 8.63 37.16 0.32 -1.21 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.49 6.35 -51.93 -0.33 0.16 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 36 H 0.15 2.20 4.49 -54.01 -0.24 1.95 16 37 H 0.41 6.49 8.32 -40.82 -0.34 6.15 16 38 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.12 3.22 6.41 -52.48 -0.34 2.88 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 42 H 0.11 2.74 6.31 -52.48 -0.33 2.41 16 43 H 0.07 0.69 7.24 -51.93 -0.38 0.31 16 44 H 0.07 0.55 6.39 -51.93 -0.33 0.22 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -29.38 362.67 -8.20 -37.58 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.98 Total: 11.94 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.55 Total: -5.69 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.10 Total: -40.30 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.21 Total: -22.90 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.38 -8.20 -37.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453720766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.775 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds