Wall clock time and date at job start Tue Mar 31 2020 17:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.50727 * 2 1 4 4 O 1.42964 * 109.51089 * 120.09866 * 2 1 3 5 5 C 1.42966 * 114.16190 * 182.50479 * 4 2 1 6 6 C 1.53293 * 109.22438 * 297.42084 * 5 4 2 7 7 N 1.47152 * 108.38620 * 52.30338 * 6 5 4 8 8 C 1.34771 * 120.98322 * 129.44208 * 7 6 5 9 9 O 1.21360 * 120.00309 * 187.80841 * 8 7 6 10 10 C 1.49351 * 120.00090 * 7.80705 * 8 7 6 11 11 O 1.21373 * 120.00125 * 6.64433 * 10 8 7 12 12 N 1.34775 * 120.00272 * 186.91875 * 10 8 7 13 13 C 1.39736 * 120.00342 * 183.40050 * 12 10 8 14 14 C 1.39352 * 119.95508 * 144.24240 * 13 12 10 15 15 C 1.38469 * 120.42331 * 180.02562 * 14 13 12 16 16 C 1.37692 * 120.32987 * 359.97438 * 15 14 13 17 17 C 1.40743 * 119.89616 * 0.02562 * 16 15 14 18 18 C 1.41416 * 120.20869 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00297 * 144.52783 * 18 17 16 20 20 C 1.39931 * 119.99585 * 324.53016 * 18 17 16 21 21 N 1.30833 * 120.00406 * 358.55479 * 20 18 17 22 22 Si 1.86800 * 119.99961 * 178.55533 * 20 18 17 23 23 H 1.48494 * 109.47374 * 94.99246 * 22 20 18 24 24 H 1.48502 * 109.46929 * 214.99536 * 22 20 18 25 25 H 1.48500 * 109.47020 * 334.98921 * 22 20 18 26 26 C 1.38305 * 119.95685 * 323.96926 * 13 12 10 27 27 C 1.47154 * 118.03381 * 309.71596 * 7 6 5 28 28 H 1.09001 * 109.68062 * 170.00303 * 27 7 6 29 29 C 1.53002 * 109.68255 * 290.56253 * 27 7 6 30 30 H 1.09006 * 109.46963 * 299.89894 * 1 2 3 31 31 H 1.08994 * 109.47334 * 59.89924 * 1 2 3 32 32 H 1.09003 * 109.46841 * 179.90115 * 1 2 3 33 33 H 1.09001 * 109.51067 * 177.49578 * 5 4 2 34 34 H 1.09004 * 109.55387 * 57.37475 * 5 4 2 35 35 H 1.08997 * 109.68246 * 292.57962 * 6 5 4 36 36 H 1.08996 * 109.71065 * 172.04436 * 6 5 4 37 37 H 0.97001 * 119.99944 * 3.40088 * 12 10 8 38 38 H 1.07998 * 119.78422 * 359.97438 * 14 13 12 39 39 H 1.08002 * 119.83130 * 179.97438 * 15 14 13 40 40 H 1.08004 * 120.05159 * 179.97438 * 16 15 14 41 41 H 0.96998 * 120.00311 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.15864 * 0.02562 * 26 13 12 43 43 H 1.08994 * 109.47080 * 59.99682 * 29 27 7 44 44 H 1.09001 * 109.46870 * 180.02562 * 29 27 7 45 45 H 1.08999 * 109.46501 * 299.99471 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 8 2.0075 -0.6758 1.1659 5 6 3.4313 -0.6848 1.2951 6 6 4.0407 -1.4457 0.1120 7 7 3.5012 -0.8767 -1.1332 8 6 4.3193 -0.5043 -2.1374 9 8 3.8720 0.0913 -3.0955 10 6 5.7766 -0.8246 -2.0711 11 8 6.2044 -1.5230 -1.1753 12 7 6.6175 -0.3336 -3.0029 13 6 7.9684 -0.6905 -2.9824 14 6 8.6606 -0.8634 -4.1794 15 6 9.9992 -1.2175 -4.1705 16 6 10.6616 -1.4022 -2.9776 17 6 9.9758 -1.2311 -1.7605 18 6 10.6498 -1.4185 -0.5315 19 1 10.4047 -0.7994 0.3187 20 6 11.6344 -2.4063 -0.4171 21 7 11.9115 -3.1752 -1.4388 22 14 12.5530 -2.6272 1.1943 23 1 11.8958 -3.6894 1.9972 24 1 13.9582 -3.0168 0.9135 25 1 12.5355 -1.3508 1.9530 26 6 8.6181 -0.8660 -1.7741 27 6 2.0424 -0.7206 -1.2472 28 1 1.8043 -0.1324 -2.1334 29 6 1.3832 -2.0975 -1.3492 30 1 -0.3633 0.5123 0.8909 31 1 -0.3633 0.5154 -0.8890 32 1 -0.3633 -1.0277 -0.0018 33 1 3.7091 -1.1775 2.2269 34 1 3.8037 0.3396 1.2999 35 1 3.7757 -2.5008 0.1785 36 1 5.1252 -1.3380 0.1251 37 1 6.2851 0.2676 -3.6877 38 1 8.1494 -0.7212 -5.1201 39 1 10.5263 -1.3495 -5.1039 40 1 11.7057 -1.6788 -2.9758 41 1 12.5937 -3.8601 -1.3594 42 1 8.0838 -0.7283 -0.8457 43 1 1.6160 -2.6787 -0.4570 44 1 0.3031 -1.9779 -1.4339 45 1 1.7610 -2.6168 -2.2299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453720766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:36 Heat of formation + Delta-G solvation = -89.497069 kcal Electronic energy + Delta-G solvation = -28776.486445 eV Core-core repulsion = 24758.889216 eV Total energy + Delta-G solvation = -4017.597229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.41419 -40.93283 -39.60008 -38.94055 -36.71866 -35.89752 -34.93072 -34.64303 -31.76806 -30.54427 -30.01510 -29.82028 -27.28120 -26.79512 -25.07767 -24.44584 -23.10575 -22.59639 -21.41891 -20.45070 -19.57905 -18.85315 -18.35354 -17.51906 -17.39184 -17.36262 -17.01997 -16.68093 -16.48251 -16.36076 -15.85199 -15.47752 -15.29041 -14.88534 -14.69465 -14.37747 -14.30760 -14.03703 -13.83483 -13.66773 -13.23370 -13.12357 -13.02034 -12.86029 -12.73555 -12.71681 -12.52152 -12.42442 -12.23606 -12.02411 -11.93486 -11.67071 -11.59641 -11.25422 -11.10359 -10.87370 -10.34544 -9.80325 -9.34131 -8.83878 -8.53298 -6.40479 0.03797 0.91178 0.96158 1.15357 1.39161 1.49172 1.52933 1.97445 2.22318 2.26949 2.70150 2.77731 3.13069 3.52684 3.66190 3.77660 3.90726 3.96616 4.10483 4.26567 4.30000 4.42598 4.46170 4.55411 4.61620 4.70680 4.75229 4.78876 4.88191 4.96822 5.00347 5.05297 5.07694 5.08919 5.15324 5.16696 5.32579 5.34881 5.61642 5.75827 5.82719 6.01519 6.09037 6.09727 6.20108 6.28693 6.55656 6.66817 6.85867 6.97176 6.99543 8.43182 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.003048 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.549927 B = 9183.238181 C =10546.422198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.059 0.941 4 O -0.382 6.382 5 C 0.053 3.947 6 C 0.039 3.961 7 N -0.577 5.577 8 C 0.520 3.480 9 O -0.535 6.535 10 C 0.495 3.505 11 O -0.512 6.512 12 N -0.625 5.625 13 C 0.139 3.861 14 C -0.233 4.233 15 C -0.096 4.096 16 C -0.177 4.177 17 C 0.087 3.913 18 C -0.500 4.500 19 H 0.070 0.930 20 C 0.030 3.970 21 N -0.842 5.842 22 Si 0.985 3.015 23 H -0.267 1.267 24 H -0.266 1.266 25 H -0.259 1.259 26 C -0.214 4.214 27 C 0.100 3.900 28 H 0.107 0.893 29 C -0.153 4.153 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.425 0.575 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.285 0.715 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.206 4.358 2.160 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.020 3.980 3 H 0.077 0.923 4 O -0.300 6.300 5 C -0.024 4.024 6 C -0.083 4.083 7 N -0.310 5.310 8 C 0.303 3.697 9 O -0.413 6.413 10 C 0.278 3.722 11 O -0.389 6.389 12 N -0.271 5.271 13 C 0.047 3.953 14 C -0.254 4.254 15 C -0.115 4.115 16 C -0.196 4.196 17 C 0.084 3.916 18 C -0.531 4.531 19 H 0.089 0.911 20 C -0.182 4.182 21 N -0.470 5.470 22 Si 0.806 3.194 23 H -0.192 1.192 24 H -0.190 1.190 25 H -0.182 1.182 26 C -0.235 4.235 27 C -0.002 4.002 28 H 0.125 0.875 29 C -0.211 4.211 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.146 0.854 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.144 0.856 37 H 0.263 0.737 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.120 0.880 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.177 3.904 2.342 19.710 hybrid contribution 0.872 -0.032 0.035 0.873 sum -18.305 3.871 2.377 18.860 Atomic orbital electron populations 1.21862 0.89775 1.04225 1.03972 1.22511 0.97406 0.94479 0.83586 0.92301 1.87954 1.21181 1.77503 1.43407 1.23074 0.80584 1.00216 0.98562 1.23443 1.03580 0.98809 0.82434 1.48178 1.07205 1.59893 1.15724 1.19748 0.86548 0.79960 0.83475 1.90718 1.76892 1.40390 1.33297 1.20476 0.87717 0.81130 0.82906 1.90609 1.77753 1.37575 1.32918 1.43032 1.06675 1.46429 1.30960 1.17531 0.81706 1.01571 0.94508 1.20566 0.95688 1.13630 0.95500 1.20871 0.94220 0.98884 0.97508 1.21454 0.99985 1.06012 0.92195 1.17851 0.90621 0.88903 0.94200 1.19711 1.18591 1.17382 0.97429 0.91148 1.26682 0.95895 0.93871 1.01712 1.69829 1.28007 1.16433 1.32701 0.85142 0.77590 0.79426 0.77206 1.19220 1.18994 1.18243 1.21166 0.94177 1.12394 0.95766 1.22201 0.77297 0.99766 1.00966 0.87497 1.22089 1.02236 0.94715 1.02041 0.90881 0.89076 0.90465 0.85407 0.92687 0.89940 0.85557 0.73685 0.85172 0.85665 0.87604 0.90485 0.88081 0.91922 0.88038 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.00 71.98 0.65 -0.94 16 2 C 0.08 1.37 3.08 30.55 0.09 1.46 16 3 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 4 O -0.38 -7.69 10.01 -148.98 -1.49 -9.18 16 5 C 0.05 1.06 6.98 72.08 0.50 1.56 16 6 C 0.04 0.97 5.75 86.35 0.50 1.46 16 7 N -0.58 -14.92 2.72 -795.99 -2.16 -17.08 16 8 C 0.52 16.01 7.75 87.24 0.68 16.69 16 9 O -0.54 -17.19 15.98 -3.28 -0.05 -17.24 16 10 C 0.50 17.82 7.57 87.24 0.66 18.48 16 11 O -0.51 -21.00 10.72 -3.32 -0.04 -21.03 16 12 N -0.62 -22.51 5.31 -304.98 -1.62 -24.13 16 13 C 0.14 6.08 6.27 38.17 0.24 6.32 16 14 C -0.23 -9.61 9.97 22.59 0.23 -9.38 16 15 C -0.10 -4.27 10.01 22.20 0.22 -4.04 16 16 C -0.18 -9.22 8.63 22.75 0.20 -9.02 16 17 C 0.09 4.78 5.51 -21.31 -0.12 4.66 16 18 C -0.50 -27.74 9.04 23.46 0.21 -27.53 16 19 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 20 C 0.03 1.58 5.36 85.25 0.46 2.04 16 21 N -0.84 -45.08 10.86 21.82 0.24 -44.84 16 22 Si 0.99 39.54 29.56 68.60 2.03 41.57 16 23 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 25 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 26 C -0.21 -10.84 8.42 22.86 0.19 -10.65 16 27 C 0.10 2.01 2.86 44.83 0.13 2.14 16 28 H 0.11 2.22 7.06 -2.39 -0.02 2.20 16 29 C -0.15 -2.63 8.63 71.98 0.62 -2.01 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.80 6.35 -2.39 -0.02 0.78 16 33 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.99 7.69 -2.39 -0.02 1.97 16 36 H 0.13 3.84 4.49 -35.38 -0.16 3.68 16 37 H 0.42 12.80 8.32 -92.71 -0.77 12.03 16 38 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 40 H 0.11 5.79 6.41 -2.91 -0.02 5.77 16 41 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 42 H 0.10 5.22 6.31 -2.91 -0.02 5.20 16 43 H 0.06 1.15 7.24 -2.39 -0.02 1.14 16 44 H 0.10 1.19 6.39 -2.39 -0.02 1.17 16 45 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -65.17 362.67 2.47 -62.70 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.12 Total: 38.00 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.46 Total: -8.76 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -3.55 Total: -86.05 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -1.58 Total: -47.46 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -65.17 2.47 -62.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453720766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.798 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds