Wall clock time and date at job start Tue Mar 31 2020 17:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.51109 * 2 1 4 4 O 1.42960 * 109.50915 * 120.14795 * 2 1 3 5 5 C 1.42966 * 114.16825 * 182.50351 * 4 2 1 6 6 C 1.53708 * 109.14691 * 297.29085 * 5 4 2 7 7 N 1.47152 * 108.16248 * 52.53357 * 6 5 4 8 8 C 1.34775 * 120.98245 * 129.43193 * 7 6 5 9 9 O 1.21364 * 120.00196 * 186.61048 * 8 7 6 10 10 C 1.49356 * 120.00151 * 6.61301 * 8 7 6 11 11 O 1.21379 * 119.99946 * 6.72078 * 10 8 7 12 12 N 1.34777 * 120.00270 * 186.72378 * 10 8 7 13 13 C 1.39744 * 119.99891 * 175.32102 * 12 10 8 14 14 C 1.39334 * 119.95370 * 35.11278 * 13 12 10 15 15 C 1.38473 * 120.42419 * 179.97438 * 14 13 12 16 16 C 1.37690 * 120.32628 * 359.71999 * 15 14 13 17 17 C 1.40746 * 119.89712 * 0.57696 * 16 15 14 18 18 C 1.41414 * 120.21017 * 179.69649 * 17 16 15 19 19 H 1.07993 * 119.99662 * 334.02721 * 18 17 16 20 20 C 1.39935 * 119.99843 * 153.74610 * 18 17 16 21 21 N 1.30826 * 119.99950 * 354.49217 * 20 18 17 22 22 Si 1.86802 * 119.99720 * 174.48721 * 20 18 17 23 23 H 1.48502 * 109.46948 * 90.00143 * 22 20 18 24 24 H 1.48495 * 109.47281 * 210.00125 * 22 20 18 25 25 H 1.48500 * 109.47184 * 330.00301 * 22 20 18 26 26 C 1.38299 * 119.94966 * 215.12919 * 13 12 10 27 27 C 1.47157 * 118.03820 * 309.15780 * 7 6 5 28 28 H 1.09000 * 109.68119 * 291.02949 * 27 7 6 29 29 C 1.53003 * 109.68300 * 170.50647 * 27 7 6 30 30 H 1.09003 * 109.47410 * 180.10407 * 1 2 3 31 31 H 1.09002 * 109.47594 * 300.10798 * 1 2 3 32 32 H 1.09003 * 109.47077 * 60.10615 * 1 2 3 33 33 H 1.08998 * 109.50913 * 57.34014 * 5 4 2 34 34 H 1.08993 * 109.51310 * 177.49231 * 5 4 2 35 35 H 1.09004 * 109.83897 * 292.85794 * 6 5 4 36 36 H 1.08994 * 109.74937 * 172.15855 * 6 5 4 37 37 H 0.97001 * 119.99667 * 355.32046 * 12 10 8 38 38 H 1.08001 * 119.79102 * 359.97438 * 14 13 12 39 39 H 1.08007 * 119.83341 * 179.97438 * 15 14 13 40 40 H 1.08003 * 120.05430 * 180.29645 * 16 15 14 41 41 H 0.97002 * 119.99498 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.16757 * 359.97438 * 26 13 12 43 43 H 1.08999 * 109.46520 * 65.24925 * 29 27 7 44 44 H 1.09000 * 109.46787 * 185.24391 * 29 27 7 45 45 H 1.08997 * 109.47246 * 305.24935 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 8 2.0074 -0.6768 1.1652 5 6 3.4312 -0.6860 1.2946 6 6 4.0402 -1.4511 0.1088 7 7 3.5011 -0.8759 -1.1338 8 6 4.3193 -0.5035 -2.1380 9 8 3.8692 0.0779 -3.1035 10 6 5.7799 -0.8064 -2.0626 11 8 6.2116 -1.4926 -1.1593 12 7 6.6186 -0.3178 -2.9977 13 6 7.9960 -0.5185 -2.8741 14 6 8.4799 -1.7062 -2.3294 15 6 9.8428 -1.9155 -2.2029 16 6 10.7356 -0.9538 -2.6199 17 6 10.2617 0.2536 -3.1663 18 6 11.1726 1.2485 -3.5907 19 1 12.1559 1.3046 -3.1477 20 6 10.8019 2.1566 -4.5888 21 7 9.6559 2.0197 -5.2048 22 14 11.9434 3.5643 -5.0414 23 1 12.8606 3.1289 -6.1252 24 1 11.1399 4.7225 -5.5084 25 1 12.7372 3.9604 -3.8505 26 6 8.8769 0.4621 -3.2925 27 6 2.0420 -0.7248 -1.2500 28 1 1.5758 -1.7075 -1.3220 29 6 1.7066 0.0973 -2.4960 30 1 -0.3634 -1.0277 0.0019 31 1 -0.3634 0.5155 0.8890 32 1 -0.3633 0.5122 -0.8910 33 1 3.8029 0.3386 1.2997 34 1 3.7089 -1.1795 2.2260 35 1 3.7716 -2.5057 0.1717 36 1 5.1251 -1.3467 0.1211 37 1 6.2660 0.1732 -3.7563 38 1 7.7875 -2.4684 -2.0037 39 1 10.2074 -2.8396 -1.7789 40 1 11.7978 -1.1237 -2.5236 41 1 9.3988 2.6494 -5.8964 42 1 8.5031 1.3831 -3.7151 43 1 2.0056 -0.4549 -3.3869 44 1 0.6336 0.2862 -2.5286 45 1 2.2417 1.0462 -2.4601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453720771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:46 Heat of formation + Delta-G solvation = -58.755666 kcal Electronic energy + Delta-G solvation = -28804.611661 eV Core-core repulsion = 24788.347479 eV Total energy + Delta-G solvation = -4016.264181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.22430 -39.59176 -38.34657 -37.30386 -35.33098 -34.40438 -33.88942 -33.32233 -29.66883 -29.42041 -29.01266 -28.54392 -25.55785 -25.27008 -23.85136 -23.06270 -21.57571 -21.23114 -20.30373 -19.52026 -17.72845 -17.57973 -16.79870 -16.57338 -16.15690 -15.88251 -15.59826 -15.43721 -14.99064 -14.72025 -14.62599 -14.26964 -14.09347 -13.40617 -13.21971 -13.12047 -13.06208 -12.84264 -12.56233 -12.45491 -12.20612 -12.04620 -11.76883 -11.71454 -11.30094 -11.26439 -11.11838 -11.00481 -10.85577 -10.65920 -10.37881 -10.35144 -9.93063 -9.86280 -9.44724 -9.24346 -8.77558 -8.57244 -7.41763 -7.14979 -6.67783 -4.46829 1.45886 2.30433 2.70177 2.86219 3.04700 3.08798 3.17049 3.41051 3.47227 3.63133 3.90176 4.32687 4.54455 4.62851 4.68592 4.74283 4.82266 4.99030 5.06343 5.17468 5.27732 5.33824 5.56108 5.58463 5.58936 5.63653 5.79015 5.84518 5.94680 6.04851 6.18429 6.37739 6.56013 6.57381 6.74433 6.88981 6.91060 6.99692 7.01418 7.24317 7.44318 7.48581 7.73500 7.84363 7.99106 8.02677 8.20994 8.34528 8.59292 8.84372 8.86363 10.17285 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.002828 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.622444 B = 9900.112770 C =10700.208655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 H 0.064 0.936 4 O -0.380 6.380 5 C 0.048 3.952 6 C 0.037 3.963 7 N -0.587 5.587 8 C 0.513 3.487 9 O -0.513 6.513 10 C 0.497 3.503 11 O -0.504 6.504 12 N -0.622 5.622 13 C 0.128 3.872 14 C -0.222 4.222 15 C -0.091 4.091 16 C -0.219 4.219 17 C 0.112 3.888 18 C -0.456 4.456 19 H 0.078 0.922 20 C 0.070 3.930 21 N -0.807 5.807 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.172 4.172 27 C 0.112 3.888 28 H 0.083 0.917 29 C -0.141 4.141 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.153 0.847 37 H 0.415 0.585 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.279 0.721 42 H 0.140 0.860 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.308 -2.268 7.099 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.082 0.918 4 O -0.299 6.299 5 C -0.030 4.030 6 C -0.084 4.084 7 N -0.322 5.322 8 C 0.296 3.704 9 O -0.389 6.389 10 C 0.279 3.721 11 O -0.382 6.382 12 N -0.266 5.266 13 C 0.036 3.964 14 C -0.242 4.242 15 C -0.110 4.110 16 C -0.239 4.239 17 C 0.109 3.891 18 C -0.486 4.486 19 H 0.096 0.904 20 C -0.145 4.145 21 N -0.433 5.433 22 Si 0.739 3.261 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.193 4.193 27 C 0.010 3.990 28 H 0.101 0.899 29 C -0.198 4.198 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.169 0.831 37 H 0.252 0.748 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.157 0.843 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.525 -2.382 7.143 17.255 hybrid contribution 0.467 0.840 -0.802 1.252 sum -15.058 -1.542 6.341 16.412 Atomic orbital electron populations 1.21792 0.92150 1.03239 1.02944 1.22544 0.95645 0.95380 0.84602 0.91808 1.87938 1.21446 1.77386 1.43163 1.23148 0.80630 1.00374 0.98823 1.23666 1.05129 0.97761 0.81890 1.48003 1.06189 1.61370 1.16600 1.20264 0.87493 0.79607 0.83020 1.90804 1.75968 1.39411 1.32717 1.20091 0.86968 0.81906 0.83164 1.90473 1.77011 1.37252 1.33467 1.43189 1.06095 1.52804 1.24492 1.17719 0.79585 0.95787 1.03268 1.20470 0.95101 0.97407 1.11270 1.20437 0.92884 0.97808 0.99861 1.21128 0.97528 0.95247 1.10012 1.17413 0.91570 0.91065 0.89052 1.19570 1.00526 1.11073 1.17457 0.90397 1.25906 0.95578 0.98009 0.95044 1.69715 1.20402 1.33920 1.19313 0.86203 0.80340 0.79985 0.79531 1.19505 1.20190 1.18611 1.21507 0.92722 0.98551 1.06559 1.22143 0.79318 1.00551 0.97035 0.89942 1.22250 0.99903 1.01431 0.96236 0.91560 0.91413 0.90474 0.92633 0.87372 0.90499 0.83063 0.74803 0.87401 0.88837 0.88711 0.90984 0.84274 0.90328 0.92934 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.38 37.16 0.35 -0.74 16 2 C 0.08 0.78 2.85 -26.58 -0.08 0.70 16 3 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 4 O -0.38 -4.31 10.38 -35.23 -0.37 -4.68 16 5 C 0.05 0.50 7.00 37.53 0.26 0.76 16 6 C 0.04 0.45 6.19 -3.32 -0.02 0.43 16 7 N -0.59 -7.81 3.01 -165.03 -0.50 -8.31 16 8 C 0.51 8.04 7.67 -11.63 -0.09 7.95 16 9 O -0.51 -8.43 12.04 5.48 0.07 -8.36 16 10 C 0.50 8.88 7.59 -11.63 -0.09 8.79 16 11 O -0.50 -9.48 10.59 5.47 0.06 -9.43 16 12 N -0.62 -12.08 5.32 -10.34 -0.05 -12.13 16 13 C 0.13 2.92 6.28 -83.82 -0.53 2.39 16 14 C -0.22 -5.02 8.70 -39.09 -0.34 -5.36 16 15 C -0.09 -2.04 10.01 -39.70 -0.40 -2.43 16 16 C -0.22 -5.25 9.79 -38.83 -0.38 -5.63 16 17 C 0.11 2.90 5.61 -106.85 -0.60 2.30 16 18 C -0.46 -11.73 9.09 -37.74 -0.34 -12.08 16 19 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 20 C 0.07 1.71 5.36 -17.35 -0.09 1.62 16 21 N -0.81 -20.04 10.41 55.55 0.58 -19.47 16 22 Si 0.91 18.33 29.56 -169.99 -5.03 13.31 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 26 C -0.17 -4.30 8.62 -38.67 -0.33 -4.63 16 27 C 0.11 1.26 3.12 -67.42 -0.21 1.05 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 C -0.14 -1.57 7.51 37.16 0.28 -1.29 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.48 6.62 -51.93 -0.34 0.14 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.15 2.13 4.41 -54.41 -0.24 1.89 16 37 H 0.42 7.53 8.30 -40.82 -0.34 7.19 16 38 H 0.11 2.37 6.20 -52.49 -0.33 2.05 16 39 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 40 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 41 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 42 H 0.14 3.58 5.79 -52.49 -0.30 3.28 16 43 H 0.08 1.00 6.72 -51.93 -0.35 0.66 16 44 H 0.05 0.45 6.54 -51.93 -0.34 0.11 16 45 H 0.07 0.94 6.87 -51.93 -0.36 0.58 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -27.81 358.11 -8.40 -36.21 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -5.95 Total: 13.64 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.61 Total: -6.18 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.03 Total: -39.91 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.24 Total: -22.46 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.81 -8.40 -36.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453720771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.543 kcal (2) G-P(sol) polarization free energy of solvation -27.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds