Wall clock time and date at job start Tue Mar 31 2020 17:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.51109 * 2 1 4 4 O 1.42960 * 109.50915 * 120.14795 * 2 1 3 5 5 C 1.42966 * 114.16825 * 182.50351 * 4 2 1 6 6 C 1.53708 * 109.14691 * 297.29085 * 5 4 2 7 7 N 1.47152 * 108.16248 * 52.53357 * 6 5 4 8 8 C 1.34775 * 120.98245 * 129.43193 * 7 6 5 9 9 O 1.21364 * 120.00196 * 186.61048 * 8 7 6 10 10 C 1.49356 * 120.00151 * 6.61301 * 8 7 6 11 11 O 1.21379 * 119.99946 * 6.72078 * 10 8 7 12 12 N 1.34777 * 120.00270 * 186.72378 * 10 8 7 13 13 C 1.39744 * 119.99891 * 175.32102 * 12 10 8 14 14 C 1.39334 * 119.95370 * 35.11278 * 13 12 10 15 15 C 1.38473 * 120.42419 * 179.97438 * 14 13 12 16 16 C 1.37690 * 120.32628 * 359.71999 * 15 14 13 17 17 C 1.40746 * 119.89712 * 0.57696 * 16 15 14 18 18 C 1.41414 * 120.21017 * 179.69649 * 17 16 15 19 19 H 1.07993 * 119.99662 * 334.02721 * 18 17 16 20 20 C 1.39935 * 119.99843 * 153.74610 * 18 17 16 21 21 N 1.30826 * 119.99950 * 354.49217 * 20 18 17 22 22 Si 1.86802 * 119.99720 * 174.48721 * 20 18 17 23 23 H 1.48502 * 109.46948 * 90.00143 * 22 20 18 24 24 H 1.48495 * 109.47281 * 210.00125 * 22 20 18 25 25 H 1.48500 * 109.47184 * 330.00301 * 22 20 18 26 26 C 1.38299 * 119.94966 * 215.12919 * 13 12 10 27 27 C 1.47157 * 118.03820 * 309.15780 * 7 6 5 28 28 H 1.09000 * 109.68119 * 291.02949 * 27 7 6 29 29 C 1.53003 * 109.68300 * 170.50647 * 27 7 6 30 30 H 1.09003 * 109.47410 * 180.10407 * 1 2 3 31 31 H 1.09002 * 109.47594 * 300.10798 * 1 2 3 32 32 H 1.09003 * 109.47077 * 60.10615 * 1 2 3 33 33 H 1.08998 * 109.50913 * 57.34014 * 5 4 2 34 34 H 1.08993 * 109.51310 * 177.49231 * 5 4 2 35 35 H 1.09004 * 109.83897 * 292.85794 * 6 5 4 36 36 H 1.08994 * 109.74937 * 172.15855 * 6 5 4 37 37 H 0.97001 * 119.99667 * 355.32046 * 12 10 8 38 38 H 1.08001 * 119.79102 * 359.97438 * 14 13 12 39 39 H 1.08007 * 119.83341 * 179.97438 * 15 14 13 40 40 H 1.08003 * 120.05430 * 180.29645 * 16 15 14 41 41 H 0.97002 * 119.99498 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.16757 * 359.97438 * 26 13 12 43 43 H 1.08999 * 109.46520 * 65.24925 * 29 27 7 44 44 H 1.09000 * 109.46787 * 185.24391 * 29 27 7 45 45 H 1.08997 * 109.47246 * 305.24935 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 8 2.0074 -0.6768 1.1652 5 6 3.4312 -0.6860 1.2946 6 6 4.0402 -1.4511 0.1088 7 7 3.5011 -0.8759 -1.1338 8 6 4.3193 -0.5035 -2.1380 9 8 3.8692 0.0779 -3.1035 10 6 5.7799 -0.8064 -2.0626 11 8 6.2116 -1.4926 -1.1593 12 7 6.6186 -0.3178 -2.9977 13 6 7.9960 -0.5185 -2.8741 14 6 8.4799 -1.7062 -2.3294 15 6 9.8428 -1.9155 -2.2029 16 6 10.7356 -0.9538 -2.6199 17 6 10.2617 0.2536 -3.1663 18 6 11.1726 1.2485 -3.5907 19 1 12.1559 1.3046 -3.1477 20 6 10.8019 2.1566 -4.5888 21 7 9.6559 2.0197 -5.2048 22 14 11.9434 3.5643 -5.0414 23 1 12.8606 3.1289 -6.1252 24 1 11.1399 4.7225 -5.5084 25 1 12.7372 3.9604 -3.8505 26 6 8.8769 0.4621 -3.2925 27 6 2.0420 -0.7248 -1.2500 28 1 1.5758 -1.7075 -1.3220 29 6 1.7066 0.0973 -2.4960 30 1 -0.3634 -1.0277 0.0019 31 1 -0.3634 0.5155 0.8890 32 1 -0.3633 0.5122 -0.8910 33 1 3.8029 0.3386 1.2997 34 1 3.7089 -1.1795 2.2260 35 1 3.7716 -2.5057 0.1717 36 1 5.1251 -1.3467 0.1211 37 1 6.2660 0.1732 -3.7563 38 1 7.7875 -2.4684 -2.0037 39 1 10.2074 -2.8396 -1.7789 40 1 11.7978 -1.1237 -2.5236 41 1 9.3988 2.6494 -5.8964 42 1 8.5031 1.3831 -3.7151 43 1 2.0056 -0.4549 -3.3869 44 1 0.6336 0.2862 -2.5286 45 1 2.2417 1.0462 -2.4601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453720771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:45 Heat of formation + Delta-G solvation = -75.273174 kcal Electronic energy + Delta-G solvation = -28805.327914 eV Core-core repulsion = 24788.347479 eV Total energy + Delta-G solvation = -4016.980434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.46078 -40.90148 -39.53451 -38.97475 -36.62613 -35.76711 -35.11112 -34.82958 -31.47464 -30.68163 -30.03460 -29.83855 -27.25970 -26.56617 -25.00770 -23.99822 -23.15030 -22.64710 -21.73829 -20.92135 -19.34565 -18.97263 -17.92078 -17.76790 -17.46279 -17.21709 -16.88231 -16.62531 -16.51196 -16.33158 -15.69218 -15.59057 -15.37241 -14.87685 -14.58755 -14.47538 -14.19522 -14.07202 -13.95227 -13.55790 -13.43811 -13.04948 -12.98278 -12.85200 -12.75753 -12.69589 -12.59614 -12.29936 -12.13531 -11.92992 -11.72219 -11.64393 -11.59096 -11.28113 -11.17184 -10.96285 -10.02965 -9.68742 -9.30118 -8.94121 -8.49515 -6.40128 0.06610 0.90858 1.05388 1.15709 1.40606 1.51719 1.54449 2.01559 2.22260 2.28160 2.69653 2.77073 3.15067 3.50201 3.69452 3.78625 3.89824 3.94711 4.11236 4.20750 4.36272 4.41900 4.47153 4.64627 4.67821 4.74202 4.77309 4.87183 4.88553 4.93535 4.96989 5.01395 5.11146 5.13972 5.15845 5.30319 5.38008 5.42872 5.69427 5.73031 5.87537 5.99171 6.07955 6.12396 6.17345 6.38457 6.60560 6.64943 6.85856 6.94924 7.00029 8.36250 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.002828 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.622444 B = 9900.112770 C =10700.208655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 H 0.057 0.943 4 O -0.386 6.386 5 C 0.051 3.949 6 C 0.037 3.963 7 N -0.581 5.581 8 C 0.516 3.484 9 O -0.524 6.524 10 C 0.497 3.503 11 O -0.512 6.512 12 N -0.627 5.627 13 C 0.134 3.866 14 C -0.229 4.229 15 C -0.087 4.087 16 C -0.236 4.236 17 C 0.083 3.917 18 C -0.489 4.489 19 H 0.078 0.922 20 C 0.030 3.970 21 N -0.831 5.831 22 Si 0.986 3.014 23 H -0.264 1.264 24 H -0.268 1.268 25 H -0.260 1.260 26 C -0.196 4.196 27 C 0.109 3.891 28 H 0.096 0.904 29 C -0.134 4.134 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.132 0.868 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.419 0.581 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.286 0.714 42 H 0.126 0.874 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.718 -2.390 7.852 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 H 0.075 0.925 4 O -0.305 6.305 5 C -0.026 4.026 6 C -0.085 4.085 7 N -0.315 5.315 8 C 0.298 3.702 9 O -0.401 6.401 10 C 0.280 3.720 11 O -0.390 6.390 12 N -0.272 5.272 13 C 0.042 3.958 14 C -0.249 4.249 15 C -0.106 4.106 16 C -0.256 4.256 17 C 0.080 3.920 18 C -0.519 4.519 19 H 0.096 0.904 20 C -0.183 4.183 21 N -0.458 5.458 22 Si 0.808 3.192 23 H -0.189 1.189 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.217 4.217 27 C 0.007 3.993 28 H 0.113 0.887 29 C -0.191 4.191 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.257 0.743 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.977 -2.529 7.929 18.907 hybrid contribution 0.797 0.786 -0.963 1.477 sum -16.180 -1.743 6.965 17.702 Atomic orbital electron populations 1.21812 0.89867 1.03964 1.04017 1.22657 0.97345 0.94635 0.83588 0.92476 1.87946 1.21563 1.77480 1.43553 1.23188 0.80363 1.00148 0.98900 1.23656 1.04119 0.98656 0.82028 1.48136 1.07094 1.60150 1.16101 1.19817 0.86454 0.80207 0.83690 1.90819 1.75704 1.40225 1.33376 1.20572 0.87978 0.81087 0.82357 1.90484 1.77711 1.37312 1.33484 1.43155 1.05107 1.53571 1.25347 1.17759 0.80960 0.95219 1.01892 1.20679 0.95579 0.97400 1.11276 1.20777 0.92569 0.98511 0.98707 1.21317 0.98449 0.95230 1.10565 1.17809 0.92248 0.92118 0.89791 1.19834 1.00835 1.12495 1.18783 0.90396 1.26748 0.97107 1.00048 0.94445 1.69788 1.21701 1.34774 1.19543 0.85127 0.78245 0.76674 0.79199 1.18875 1.19297 1.18344 1.21424 0.93050 0.98920 1.08351 1.22395 0.77625 1.01463 0.97786 0.88660 1.22135 1.01625 1.00029 0.95359 0.90982 0.90836 0.88958 0.93036 0.85062 0.89438 0.84911 0.74347 0.86585 0.85664 0.87701 0.90321 0.85641 0.92119 0.89800 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.38 71.98 0.68 -1.01 16 2 C 0.08 1.38 2.85 30.69 0.09 1.47 16 3 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 4 O -0.39 -7.85 10.38 -148.98 -1.55 -9.40 16 5 C 0.05 0.98 7.00 72.22 0.51 1.49 16 6 C 0.04 0.84 6.19 86.49 0.54 1.38 16 7 N -0.58 -14.87 3.01 -794.39 -2.39 -17.26 16 8 C 0.52 16.08 7.67 87.24 0.67 16.74 16 9 O -0.52 -17.26 12.04 -3.29 -0.04 -17.30 16 10 C 0.50 17.87 7.59 87.24 0.66 18.53 16 11 O -0.51 -19.19 10.59 -3.34 -0.04 -19.22 16 12 N -0.63 -24.89 5.32 -304.98 -1.62 -26.52 16 13 C 0.13 6.25 6.28 38.16 0.24 6.49 16 14 C -0.23 -10.34 8.70 22.59 0.20 -10.14 16 15 C -0.09 -3.85 10.01 22.20 0.22 -3.62 16 16 C -0.24 -11.43 9.79 22.75 0.22 -11.21 16 17 C 0.08 4.44 5.61 -21.31 -0.12 4.32 16 18 C -0.49 -25.88 9.09 23.46 0.21 -25.67 16 19 H 0.08 3.95 7.85 -2.91 -0.02 3.93 16 20 C 0.03 1.46 5.36 85.25 0.46 1.92 16 21 N -0.83 -42.26 10.41 21.82 0.23 -42.03 16 22 Si 0.99 37.72 29.56 68.60 2.03 39.74 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 26 C -0.20 -10.15 8.62 22.86 0.20 -9.95 16 27 C 0.11 2.24 3.12 44.97 0.14 2.38 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 C -0.13 -2.79 7.51 71.98 0.54 -2.25 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.83 6.62 -2.39 -0.02 0.82 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.13 3.66 4.41 -41.69 -0.18 3.48 16 37 H 0.42 15.73 8.30 -92.71 -0.77 14.96 16 38 H 0.12 5.02 6.20 -2.91 -0.02 5.01 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 42 H 0.13 6.77 5.79 -2.91 -0.02 6.75 16 43 H 0.06 1.49 6.72 -2.39 -0.02 1.48 16 44 H 0.08 1.20 6.54 -2.39 -0.02 1.18 16 45 H 0.05 1.34 6.87 -2.39 -0.02 1.33 16 Total: -1.00 -60.57 358.11 2.16 -58.41 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: 0.09 Total: 42.69 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 5.45 Total: -9.13 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -3.79 Total: -85.81 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.62 Total: -45.91 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.74 kcal Total: -60.57 2.16 -58.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453720771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.860 kcal (2) G-P(sol) polarization free energy of solvation -60.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds