Wall clock time and date at job start Tue Mar 31 2020 17:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.64147 * 2 1 4 4 C 1.55149 * 110.72369 * 123.14789 * 2 1 3 5 5 C 1.54916 * 101.58277 * 82.85881 * 4 2 1 6 6 N 1.47426 * 104.82956 * 37.00740 * 5 4 2 7 7 C 1.34774 * 125.64592 * 155.91170 * 6 5 4 8 8 O 1.21357 * 120.00192 * 179.97438 * 7 6 5 9 9 C 1.49365 * 120.00097 * 359.97438 * 7 6 5 10 10 O 1.21371 * 119.99642 * 359.97438 * 9 7 6 11 11 N 1.34774 * 120.00097 * 179.97438 * 9 7 6 12 12 C 1.39736 * 119.99842 * 174.88548 * 11 9 7 13 13 C 1.39347 * 119.95229 * 145.60132 * 12 11 9 14 14 C 1.38471 * 120.42500 * 179.97438 * 13 12 11 15 15 C 1.37694 * 120.32533 * 0.02562 * 14 13 12 16 16 C 1.40751 * 119.89657 * 359.97438 * 15 14 13 17 17 C 1.41408 * 120.20477 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00239 * 25.24099 * 17 16 15 19 19 C 1.39934 * 120.00060 * 205.24276 * 17 16 15 20 20 N 1.30828 * 120.00045 * 16.71016 * 19 17 16 21 21 Si 1.86797 * 120.00107 * 196.71368 * 19 17 16 22 22 H 1.48497 * 109.47390 * 89.99888 * 21 19 17 23 23 H 1.48498 * 109.47141 * 210.00020 * 21 19 17 24 24 H 1.48500 * 109.47347 * 329.99778 * 21 19 17 25 25 C 1.38302 * 119.95300 * 325.31909 * 12 11 9 26 26 C 1.47481 * 108.76121 * 335.89397 * 6 5 4 27 27 H 1.09003 * 109.96734 * 120.35147 * 26 6 5 28 28 C 1.52995 * 110.03279 * 241.66349 * 26 6 5 29 29 O 1.42907 * 109.47022 * 292.60952 * 28 26 6 30 30 H 1.09007 * 109.46906 * 300.69299 * 1 2 3 31 31 H 1.09002 * 109.47371 * 180.70120 * 1 2 3 32 32 H 1.08998 * 109.47767 * 60.69037 * 1 2 3 33 33 H 1.08999 * 111.00556 * 200.93047 * 4 2 1 34 34 H 1.09001 * 111.00474 * 324.78524 * 4 2 1 35 35 H 1.09002 * 110.36841 * 155.84863 * 5 4 2 36 36 H 1.08997 * 110.36581 * 278.06403 * 5 4 2 37 37 H 0.97001 * 119.99890 * 354.87738 * 11 9 7 38 38 H 1.08000 * 119.78992 * 359.95487 * 13 12 11 39 39 H 1.07994 * 119.83567 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.05115 * 179.97438 * 15 14 13 41 41 H 0.96994 * 120.00368 * 180.02562 * 20 19 17 42 42 H 1.07993 * 120.16256 * 0.02562 * 25 12 11 43 43 H 1.09000 * 109.47495 * 52.61014 * 28 26 6 44 44 H 1.08996 * 109.47335 * 172.61328 * 28 26 6 45 45 H 0.96700 * 113.99484 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0790 -0.7935 1.2150 5 6 2.0126 -2.2498 0.6910 6 7 2.3715 -2.1543 -0.7357 7 6 2.8847 -3.1501 -1.4849 8 8 3.1432 -2.9579 -2.6549 9 6 3.1355 -4.4904 -0.8751 10 8 2.8775 -4.6825 0.2952 11 7 3.6483 -5.4864 -1.6244 12 6 3.9827 -6.7063 -1.0307 13 6 3.8196 -7.8938 -1.7413 14 6 4.1484 -9.1081 -1.1626 15 6 4.6400 -9.1553 0.1227 16 6 4.8102 -7.9641 0.8529 17 6 5.3141 -8.0050 2.1735 18 1 5.9353 -8.8302 2.4892 19 6 5.0078 -6.9764 3.0714 20 7 4.0157 -6.1617 2.8192 21 14 6.0154 -6.7665 4.6303 22 1 7.1575 -5.8560 4.3627 23 1 5.1607 -6.1879 5.6980 24 1 6.5289 -8.0888 5.0696 25 6 4.4806 -6.7329 0.2593 26 6 2.0759 -0.7891 -1.2088 27 1 2.9867 -0.3178 -1.5784 28 6 1.0234 -0.8352 -2.3183 29 8 1.5779 -1.4654 -3.4749 30 1 -0.3633 0.5246 0.8838 31 1 -0.3634 -1.0276 0.0126 32 1 -0.3634 0.5030 -0.8961 33 1 3.1062 -0.5050 1.4381 34 1 1.4397 -0.6629 2.0881 35 1 2.7294 -2.8768 1.2214 36 1 1.0044 -2.6481 0.8044 37 1 3.7850 -5.3564 -2.5759 38 1 3.4340 -7.8670 -2.7497 39 1 4.0186 -10.0226 -1.7222 40 1 4.8946 -10.1048 0.5698 41 1 3.8036 -5.4484 3.4413 42 1 4.6113 -5.8129 0.8096 43 1 0.1582 -1.4025 -1.9751 44 1 0.7159 0.1798 -2.5698 45 1 0.9649 -1.5290 -4.2200 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453728553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:39 Heat of formation + Delta-G solvation = -80.616447 kcal Electronic energy + Delta-G solvation = -29357.169732 eV Core-core repulsion = 25339.957596 eV Total energy + Delta-G solvation = -4017.212136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.65910 -39.25459 -37.62760 -36.90829 -36.23187 -34.38454 -33.24728 -32.63401 -30.45758 -29.54879 -28.54793 -27.52268 -25.27272 -25.00337 -24.42132 -22.24263 -21.23056 -20.46026 -19.56103 -18.95084 -17.85982 -17.39307 -16.86130 -16.78381 -16.09136 -15.57385 -14.99041 -14.75473 -14.64534 -14.56527 -14.38129 -14.05162 -13.82415 -13.41788 -13.02598 -12.85258 -12.73804 -12.65664 -12.35073 -12.22121 -12.13824 -11.77448 -11.58273 -11.26250 -11.19052 -11.10529 -11.06361 -10.75597 -10.69621 -10.57059 -10.50833 -9.96610 -9.83123 -9.72415 -9.25996 -9.00377 -8.65882 -8.52958 -7.35918 -6.95156 -6.56990 -4.28688 1.92597 2.64426 2.83246 3.05792 3.11935 3.14990 3.24986 3.85023 3.90514 3.99706 4.06015 4.30564 4.51559 4.70863 4.77509 4.96959 5.04630 5.10474 5.13208 5.16401 5.25306 5.39794 5.49544 5.68289 5.72998 5.77071 5.80393 5.97150 6.06908 6.13309 6.22914 6.35894 6.47654 6.73259 6.97564 7.01733 7.14148 7.31071 7.44928 7.59788 7.67436 7.76809 7.89836 8.04629 8.13649 8.28288 8.40864 8.56735 8.82742 8.96521 9.00754 10.28914 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012767 B = 0.004023 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.660975 B = 6959.093769 C = 8802.761596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.131 4.131 5 C 0.096 3.904 6 N -0.592 5.592 7 C 0.517 3.483 8 O -0.490 6.490 9 C 0.487 3.513 10 O -0.465 6.465 11 N -0.641 5.641 12 C 0.140 3.860 13 C -0.262 4.262 14 C -0.079 4.079 15 C -0.236 4.236 16 C 0.120 3.880 17 C -0.464 4.464 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.762 5.762 21 Si 0.902 3.098 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.155 4.155 26 C 0.143 3.857 27 H 0.082 0.918 28 C 0.064 3.936 29 O -0.539 6.539 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.407 0.593 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.280 0.720 42 H 0.135 0.865 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.205 14.554 -4.566 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.169 4.169 5 C -0.026 4.026 6 N -0.328 5.328 7 C 0.300 3.700 8 O -0.363 6.363 9 C 0.267 3.733 10 O -0.336 6.336 11 N -0.287 5.287 12 C 0.048 3.952 13 C -0.284 4.284 14 C -0.098 4.098 15 C -0.256 4.256 16 C 0.117 3.883 17 C -0.493 4.493 18 H 0.096 0.904 19 C -0.147 4.147 20 N -0.386 5.386 21 Si 0.727 3.273 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.176 4.176 26 C 0.039 3.961 27 H 0.101 0.899 28 C -0.015 4.015 29 O -0.343 6.343 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.242 0.758 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.152 0.848 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.832 14.649 -3.901 16.628 hybrid contribution -0.200 0.291 -0.095 0.366 sum -7.032 14.940 -3.996 16.989 Atomic orbital electron populations 1.21915 0.94120 1.02544 1.02086 1.22188 0.96502 0.99185 0.93837 0.89056 1.22932 1.02099 0.94658 0.97225 1.22662 1.02549 0.97009 0.80365 1.48322 1.62305 1.10402 1.11815 1.20075 0.78838 0.85009 0.86110 1.90793 1.48505 1.82049 1.14954 1.20067 0.80391 0.85368 0.87446 1.90917 1.47081 1.81011 1.14638 1.43068 1.61262 1.12219 1.12182 1.17603 1.00324 0.82605 0.94623 1.20042 1.16610 0.91586 1.00122 1.20294 0.99149 0.95221 0.95139 1.21001 1.11496 0.97125 0.96013 1.17463 0.88239 0.90125 0.92484 1.19532 1.28241 1.06317 0.95238 0.90445 1.25941 0.94068 0.94842 0.99843 1.69911 1.20651 1.12882 1.35114 0.86413 0.80435 0.79539 0.80920 1.19467 1.20383 1.18729 1.21345 1.04001 0.99724 0.92573 1.21723 0.98133 0.82915 0.93283 0.89949 1.22646 0.95564 0.96171 0.87077 1.86941 1.41755 1.81964 1.23595 0.91964 0.92003 0.92202 0.90395 0.89488 0.87306 0.91258 0.75809 0.89183 0.89036 0.88935 0.90918 0.84758 0.93411 0.93169 0.78872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 7.94 37.16 0.30 -0.79 16 2 C -0.10 -0.84 3.54 -88.79 -0.31 -1.16 16 3 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.13 -1.29 6.58 -24.58 -0.16 -1.45 16 5 C 0.10 1.33 5.74 -2.52 -0.01 1.31 16 6 N -0.59 -8.93 3.08 -163.20 -0.50 -9.43 16 7 C 0.52 9.44 7.67 -11.63 -0.09 9.35 16 8 O -0.49 -9.46 13.81 -18.49 -0.26 -9.72 16 9 C 0.49 10.10 7.58 -11.63 -0.09 10.01 16 10 O -0.46 -10.70 11.54 5.48 0.06 -10.64 16 11 N -0.64 -13.36 5.32 -10.34 -0.05 -13.42 16 12 C 0.14 3.37 6.25 -83.82 -0.52 2.84 16 13 C -0.26 -5.95 9.97 -39.08 -0.39 -6.34 16 14 C -0.08 -1.80 10.02 -39.69 -0.40 -2.20 16 15 C -0.24 -5.90 9.79 -38.83 -0.38 -6.28 16 16 C 0.12 3.26 5.56 -106.85 -0.59 2.67 16 17 C -0.46 -12.48 9.05 -37.74 -0.34 -12.82 16 18 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 19 C 0.07 1.86 5.16 -17.34 -0.09 1.77 16 20 N -0.76 -20.01 10.96 55.55 0.61 -19.40 16 21 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.16 -4.15 7.28 -38.67 -0.28 -4.43 16 26 C 0.14 1.70 3.23 -66.70 -0.22 1.49 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 C 0.06 0.69 5.33 37.16 0.20 0.89 16 29 O -0.54 -7.16 10.42 -59.21 -0.62 -7.77 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.53 6.93 -51.93 -0.36 0.17 16 32 H 0.06 0.37 6.71 -51.93 -0.35 0.03 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.71 8.04 -51.93 -0.42 0.30 16 35 H 0.11 1.83 6.16 -51.93 -0.32 1.51 16 36 H 0.07 0.95 7.74 -51.93 -0.40 0.55 16 37 H 0.41 7.48 8.30 -40.82 -0.34 7.14 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 42 H 0.13 3.77 4.63 -52.49 -0.24 3.53 16 43 H 0.05 0.51 6.93 -51.93 -0.36 0.15 16 44 H 0.05 0.41 7.42 -51.93 -0.39 0.03 16 45 H 0.37 3.25 9.12 45.56 0.42 3.66 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -32.04 361.61 -8.99 -41.03 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -5.27 Total: 15.15 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -3.39 Total: -5.13 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.05 Total: -42.25 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.81 Total: -28.13 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.04 -8.99 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453728553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.586 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds