Wall clock time and date at job start Tue Mar 31 2020 17:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.64147 * 2 1 4 4 C 1.55149 * 110.72369 * 123.14789 * 2 1 3 5 5 C 1.54916 * 101.58277 * 82.85881 * 4 2 1 6 6 N 1.47426 * 104.82956 * 37.00740 * 5 4 2 7 7 C 1.34774 * 125.64592 * 155.91170 * 6 5 4 8 8 O 1.21357 * 120.00192 * 179.97438 * 7 6 5 9 9 C 1.49365 * 120.00097 * 359.97438 * 7 6 5 10 10 O 1.21371 * 119.99642 * 359.97438 * 9 7 6 11 11 N 1.34774 * 120.00097 * 179.97438 * 9 7 6 12 12 C 1.39736 * 119.99842 * 174.88548 * 11 9 7 13 13 C 1.39347 * 119.95229 * 145.60132 * 12 11 9 14 14 C 1.38471 * 120.42500 * 179.97438 * 13 12 11 15 15 C 1.37694 * 120.32533 * 0.02562 * 14 13 12 16 16 C 1.40751 * 119.89657 * 359.97438 * 15 14 13 17 17 C 1.41408 * 120.20477 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00239 * 25.24099 * 17 16 15 19 19 C 1.39934 * 120.00060 * 205.24276 * 17 16 15 20 20 N 1.30828 * 120.00045 * 16.71016 * 19 17 16 21 21 Si 1.86797 * 120.00107 * 196.71368 * 19 17 16 22 22 H 1.48497 * 109.47390 * 89.99888 * 21 19 17 23 23 H 1.48498 * 109.47141 * 210.00020 * 21 19 17 24 24 H 1.48500 * 109.47347 * 329.99778 * 21 19 17 25 25 C 1.38302 * 119.95300 * 325.31909 * 12 11 9 26 26 C 1.47481 * 108.76121 * 335.89397 * 6 5 4 27 27 H 1.09003 * 109.96734 * 120.35147 * 26 6 5 28 28 C 1.52995 * 110.03279 * 241.66349 * 26 6 5 29 29 O 1.42907 * 109.47022 * 292.60952 * 28 26 6 30 30 H 1.09007 * 109.46906 * 300.69299 * 1 2 3 31 31 H 1.09002 * 109.47371 * 180.70120 * 1 2 3 32 32 H 1.08998 * 109.47767 * 60.69037 * 1 2 3 33 33 H 1.08999 * 111.00556 * 200.93047 * 4 2 1 34 34 H 1.09001 * 111.00474 * 324.78524 * 4 2 1 35 35 H 1.09002 * 110.36841 * 155.84863 * 5 4 2 36 36 H 1.08997 * 110.36581 * 278.06403 * 5 4 2 37 37 H 0.97001 * 119.99890 * 354.87738 * 11 9 7 38 38 H 1.08000 * 119.78992 * 359.95487 * 13 12 11 39 39 H 1.07994 * 119.83567 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.05115 * 179.97438 * 15 14 13 41 41 H 0.96994 * 120.00368 * 180.02562 * 20 19 17 42 42 H 1.07993 * 120.16256 * 0.02562 * 25 12 11 43 43 H 1.09000 * 109.47495 * 52.61014 * 28 26 6 44 44 H 1.08996 * 109.47335 * 172.61328 * 28 26 6 45 45 H 0.96700 * 113.99484 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0790 -0.7935 1.2150 5 6 2.0126 -2.2498 0.6910 6 7 2.3715 -2.1543 -0.7357 7 6 2.8847 -3.1501 -1.4849 8 8 3.1432 -2.9579 -2.6549 9 6 3.1355 -4.4904 -0.8751 10 8 2.8775 -4.6825 0.2952 11 7 3.6483 -5.4864 -1.6244 12 6 3.9827 -6.7063 -1.0307 13 6 3.8196 -7.8938 -1.7413 14 6 4.1484 -9.1081 -1.1626 15 6 4.6400 -9.1553 0.1227 16 6 4.8102 -7.9641 0.8529 17 6 5.3141 -8.0050 2.1735 18 1 5.9353 -8.8302 2.4892 19 6 5.0078 -6.9764 3.0714 20 7 4.0157 -6.1617 2.8192 21 14 6.0154 -6.7665 4.6303 22 1 7.1575 -5.8560 4.3627 23 1 5.1607 -6.1879 5.6980 24 1 6.5289 -8.0888 5.0696 25 6 4.4806 -6.7329 0.2593 26 6 2.0759 -0.7891 -1.2088 27 1 2.9867 -0.3178 -1.5784 28 6 1.0234 -0.8352 -2.3183 29 8 1.5779 -1.4654 -3.4749 30 1 -0.3633 0.5246 0.8838 31 1 -0.3634 -1.0276 0.0126 32 1 -0.3634 0.5030 -0.8961 33 1 3.1062 -0.5050 1.4381 34 1 1.4397 -0.6629 2.0881 35 1 2.7294 -2.8768 1.2214 36 1 1.0044 -2.6481 0.8044 37 1 3.7850 -5.3564 -2.5759 38 1 3.4340 -7.8670 -2.7497 39 1 4.0186 -10.0226 -1.7222 40 1 4.8946 -10.1048 0.5698 41 1 3.8036 -5.4484 3.4413 42 1 4.6113 -5.8129 0.8096 43 1 0.1582 -1.4025 -1.9751 44 1 0.7159 0.1798 -2.5698 45 1 0.9649 -1.5290 -4.2200 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453728553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:38 Heat of formation + Delta-G solvation = -102.001677 kcal Electronic energy + Delta-G solvation = -29358.097065 eV Core-core repulsion = 25339.957596 eV Total energy + Delta-G solvation = -4018.139469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.02164 -40.67291 -39.11079 -38.58703 -37.18403 -36.16176 -35.03732 -33.77179 -31.47527 -31.41131 -30.35084 -28.46158 -27.21677 -25.90698 -25.82524 -23.59026 -22.94537 -22.01486 -20.95668 -20.18249 -19.50771 -18.57262 -18.19036 -18.00848 -17.62140 -17.22277 -16.57497 -16.50138 -16.24988 -15.75986 -15.41567 -15.17999 -15.08657 -14.82771 -14.59890 -14.42069 -14.02386 -13.92072 -13.58866 -13.46286 -13.25158 -13.06817 -13.03888 -12.85911 -12.70921 -12.62409 -12.43821 -12.22865 -11.88094 -11.70930 -11.60104 -11.54858 -11.46962 -11.11029 -10.85662 -10.83363 -10.26728 -9.76293 -9.30932 -8.83379 -8.46329 -6.30212 0.32637 0.99962 1.14071 1.34061 1.38092 1.50940 1.52499 2.22773 2.27049 2.53980 2.80123 3.20499 3.33851 3.54886 3.70590 3.76358 4.01432 4.16043 4.23929 4.36508 4.40541 4.47837 4.48970 4.64540 4.68370 4.75904 4.85915 4.88680 4.96878 5.07225 5.11713 5.12175 5.16246 5.19055 5.23350 5.27127 5.38855 5.43983 5.74045 5.85058 5.99787 6.13503 6.18237 6.39712 6.43265 6.63030 6.85486 6.97533 6.98110 7.04249 7.14570 8.40048 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012767 B = 0.004023 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.660975 B = 6959.093769 C = 8802.761596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.120 0.880 4 C -0.122 4.122 5 C 0.092 3.908 6 N -0.586 5.586 7 C 0.519 3.481 8 O -0.504 6.504 9 C 0.480 3.520 10 O -0.491 6.491 11 N -0.638 5.638 12 C 0.138 3.862 13 C -0.259 4.259 14 C -0.075 4.075 15 C -0.254 4.254 16 C 0.089 3.911 17 C -0.501 4.501 18 H 0.076 0.924 19 C 0.032 3.968 20 N -0.793 5.793 21 Si 0.976 3.024 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.258 1.258 25 C -0.183 4.183 26 C 0.131 3.869 27 H 0.073 0.927 28 C 0.065 3.935 29 O -0.571 6.571 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.418 0.582 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.101 0.899 41 H 0.284 0.716 42 H 0.113 0.887 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 16.328 -4.880 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.138 0.862 4 C -0.160 4.160 5 C -0.030 4.030 6 N -0.321 5.321 7 C 0.300 3.700 8 O -0.379 6.379 9 C 0.262 3.738 10 O -0.364 6.364 11 N -0.285 5.285 12 C 0.045 3.955 13 C -0.280 4.280 14 C -0.094 4.094 15 C -0.274 4.274 16 C 0.086 3.914 17 C -0.531 4.531 18 H 0.094 0.906 19 C -0.186 4.186 20 N -0.416 5.416 21 Si 0.797 3.203 22 H -0.191 1.191 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.204 4.204 26 C 0.029 3.971 27 H 0.091 0.909 28 C -0.014 4.014 29 O -0.377 6.377 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.256 0.744 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.130 0.870 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.820 16.450 -4.239 18.701 hybrid contribution 0.031 -0.267 -0.103 0.288 sum -7.789 16.184 -4.342 18.478 Atomic orbital electron populations 1.21921 0.92756 1.01992 1.03775 1.22233 0.97466 0.99613 0.90969 0.86177 1.22924 1.02914 0.91593 0.98542 1.22671 1.01173 0.99497 0.79623 1.48435 1.60479 1.11037 1.12151 1.19546 0.79742 0.84622 0.86089 1.90781 1.49784 1.82130 1.15217 1.20701 0.79585 0.86379 0.87168 1.90918 1.47958 1.81694 1.15834 1.43027 1.61157 1.11541 1.12746 1.17771 0.99267 0.84350 0.94076 1.20461 1.15270 0.90939 1.01340 1.20710 0.97362 0.96880 0.94439 1.21234 1.12207 0.96801 0.97164 1.17850 0.89092 0.91171 0.93308 1.19785 1.29641 1.07583 0.96044 0.90561 1.26765 0.94760 0.94014 1.03027 1.70002 1.21865 1.13332 1.36433 0.85297 0.78658 0.79583 0.76723 1.19146 1.19214 1.18129 1.21227 1.06371 0.98901 0.93909 1.22143 0.98579 0.81023 0.95362 0.90905 1.22742 0.94712 0.97902 0.86008 1.86884 1.43381 1.82558 1.24895 0.90201 0.93672 0.90643 0.90400 0.87236 0.90924 0.91381 0.74416 0.85925 0.85142 0.88116 0.90560 0.86961 0.93432 0.89676 0.76997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 7.94 71.98 0.57 -1.08 16 2 C -0.08 -1.20 3.54 -9.61 -0.03 -1.23 16 3 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.12 -2.19 6.58 31.99 0.21 -1.98 16 5 C 0.09 2.60 5.74 86.86 0.50 3.10 16 6 N -0.59 -17.77 3.08 -788.62 -2.43 -20.19 16 7 C 0.52 19.35 7.67 87.24 0.67 20.02 16 8 O -0.50 -19.62 13.81 19.66 0.27 -19.34 16 9 C 0.48 20.72 7.58 87.24 0.66 21.38 16 10 O -0.49 -23.90 11.54 -3.31 -0.04 -23.94 16 11 N -0.64 -27.14 5.32 -304.98 -1.62 -28.77 16 12 C 0.14 6.75 6.25 38.16 0.24 6.98 16 13 C -0.26 -11.47 9.97 22.59 0.23 -11.24 16 14 C -0.08 -3.33 10.02 22.20 0.22 -3.11 16 15 C -0.25 -12.83 9.79 22.76 0.22 -12.61 16 16 C 0.09 5.01 5.56 -21.31 -0.12 4.89 16 17 C -0.50 -28.10 9.05 23.46 0.21 -27.88 16 18 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 19 C 0.03 1.66 5.16 85.25 0.44 2.10 16 20 N -0.79 -43.49 10.96 21.82 0.24 -43.25 16 21 Si 0.98 39.76 29.59 68.60 2.03 41.79 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 25 C -0.18 -10.18 7.28 22.86 0.17 -10.01 16 26 C 0.13 2.92 3.23 45.25 0.15 3.07 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 C 0.06 1.26 5.33 71.98 0.38 1.64 16 29 O -0.57 -14.48 10.42 -126.05 -1.31 -15.79 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.04 0.67 6.93 -2.39 -0.02 0.66 16 32 H 0.07 0.63 6.71 -2.39 -0.02 0.62 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.52 8.04 -2.39 -0.02 1.50 16 35 H 0.07 2.60 6.16 -2.39 -0.01 2.59 16 36 H 0.07 1.91 7.74 -2.39 -0.02 1.89 16 37 H 0.42 15.47 8.30 -92.71 -0.77 14.70 16 38 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 39 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 42 H 0.11 6.70 4.63 -2.91 -0.01 6.69 16 43 H 0.05 0.93 6.93 -2.39 -0.02 0.91 16 44 H 0.09 1.08 7.42 -2.39 -0.02 1.06 16 45 H 0.38 6.30 9.12 -74.06 -0.68 5.63 16 Total: -1.00 -73.12 361.61 1.46 -71.66 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -0.40 Total: 43.81 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.72 Total: -5.97 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -3.81 Total: -92.21 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: -1.08 Total: -59.08 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -73.12 1.46 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453728553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.340 kcal (2) G-P(sol) polarization free energy of solvation -73.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds