Wall clock time and date at job start Tue Mar 31 2020 17:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.64369 * 2 1 4 4 C 1.55156 * 110.72025 * 123.14122 * 2 1 3 5 5 C 1.54907 * 101.58298 * 154.04297 * 4 2 1 6 6 N 1.47430 * 104.92783 * 322.93595 * 5 4 2 7 7 C 1.34770 * 125.64690 * 204.15870 * 6 5 4 8 8 O 1.21362 * 120.00239 * 180.02562 * 7 6 5 9 9 C 1.49353 * 120.00456 * 0.02562 * 7 6 5 10 10 O 1.21384 * 119.99782 * 0.02562 * 9 7 6 11 11 N 1.34772 * 120.00555 * 180.02562 * 9 7 6 12 12 C 1.39740 * 120.00572 * 174.87132 * 11 9 7 13 13 C 1.39346 * 119.95485 * 146.32940 * 12 11 9 14 14 C 1.38468 * 120.42258 * 179.97438 * 13 12 11 15 15 C 1.37697 * 120.32864 * 359.97438 * 14 13 12 16 16 C 1.40749 * 119.89975 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.21162 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00209 * 151.81820 * 17 16 15 19 19 C 1.39936 * 119.99736 * 331.81228 * 17 16 15 20 20 N 1.30827 * 120.00059 * 348.99174 * 19 17 16 21 21 Si 1.86795 * 119.99734 * 168.98947 * 19 17 16 22 22 H 1.48500 * 109.47092 * 90.00270 * 21 19 17 23 23 H 1.48503 * 109.47239 * 210.00123 * 21 19 17 24 24 H 1.48503 * 109.47463 * 330.00024 * 21 19 17 25 25 C 1.38299 * 119.95161 * 326.05705 * 12 11 9 26 26 C 1.47291 * 108.55702 * 24.15380 * 6 5 4 27 27 H 1.08992 * 109.85552 * 239.50032 * 26 6 5 28 28 C 1.52997 * 109.99971 * 118.43170 * 26 6 5 29 29 O 1.42898 * 109.47381 * 67.07392 * 28 26 6 30 30 H 1.08995 * 109.46889 * 298.31101 * 1 2 3 31 31 H 1.09005 * 109.46998 * 58.30866 * 1 2 3 32 32 H 1.08997 * 109.47010 * 178.31298 * 1 2 3 33 33 H 1.09003 * 111.00390 * 35.97013 * 4 2 1 34 34 H 1.09001 * 111.04001 * 272.13229 * 4 2 1 35 35 H 1.08996 * 110.36788 * 81.83187 * 5 4 2 36 36 H 1.09004 * 110.36812 * 204.04733 * 5 4 2 37 37 H 0.96999 * 119.99737 * 354.86332 * 11 9 7 38 38 H 1.08000 * 119.78824 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.84072 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.05205 * 180.02562 * 15 14 13 41 41 H 0.96998 * 120.00136 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.16432 * 0.02562 * 25 12 11 43 43 H 1.08997 * 109.47064 * 187.07737 * 28 26 6 44 44 H 1.09006 * 109.47399 * 307.07781 * 28 26 6 45 45 H 0.96699 * 114.00612 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7934 1.2151 5 6 3.4652 -1.2447 0.6914 6 7 3.2515 -1.5489 -0.7353 7 6 4.0033 -2.3817 -1.4819 8 8 3.7342 -2.5575 -2.6522 9 6 5.1677 -3.0884 -0.8693 10 8 5.4367 -2.9131 0.3013 11 7 5.9199 -3.9209 -1.6161 12 6 7.0710 -4.4986 -1.0739 13 6 7.4514 -5.7832 -1.4570 14 6 8.5904 -6.3648 -0.9263 15 6 9.3605 -5.6792 -0.0137 16 6 8.9890 -4.3808 0.3830 17 6 9.7748 -3.6710 1.3201 18 1 9.7964 -2.5915 1.2991 19 6 10.5242 -4.3673 2.2750 20 7 10.3368 -5.6510 2.4446 21 14 11.7921 -3.4641 3.3073 22 1 11.1501 -2.9545 4.5456 23 1 12.8918 -4.3950 3.6670 24 1 12.3425 -2.3246 2.5302 25 6 7.8341 -3.7924 -0.1620 26 6 2.0798 -0.7906 -1.2059 27 1 1.3191 -1.4773 -1.5770 28 6 2.4941 0.1764 -2.3169 29 8 2.8921 -0.5664 -3.4710 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5399 -0.8745 32 1 -0.3633 -1.0272 -0.0303 33 1 1.4469 -1.6529 1.4383 34 1 2.1820 -0.1496 2.0886 35 1 4.1929 -0.4410 0.8030 36 1 3.8001 -2.1353 1.2231 37 1 5.6621 -4.1191 -2.5299 38 1 6.8544 -6.3284 -2.1732 39 1 8.8767 -7.3608 -1.2302 40 1 10.2483 -6.1369 0.3971 41 1 10.8565 -6.1337 3.1062 42 1 7.5425 -2.7952 0.1328 43 1 1.6518 0.8196 -2.5714 44 1 3.3280 0.7886 -1.9735 45 1 3.1680 -0.0163 -4.2169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453728556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:47 Heat of formation + Delta-G solvation = -87.128061 kcal Electronic energy + Delta-G solvation = -28627.378897 eV Core-core repulsion = 24609.884396 eV Total energy + Delta-G solvation = -4017.494501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.74790 -39.33214 -37.68182 -37.05528 -36.32341 -34.60170 -33.21414 -32.78300 -30.48857 -29.83409 -28.61838 -28.02369 -25.33854 -24.71456 -23.97560 -22.37004 -21.20112 -20.80629 -20.16129 -19.16826 -17.87688 -17.31810 -17.10328 -16.82542 -16.18804 -15.55140 -15.29744 -14.98768 -14.66476 -14.51782 -14.39865 -14.00669 -13.96849 -13.51703 -13.32773 -12.98154 -12.92046 -12.76240 -12.45771 -12.18068 -11.99436 -11.84438 -11.71128 -11.48256 -11.30387 -11.15089 -11.08716 -10.99703 -10.73000 -10.61756 -10.51408 -10.06393 -10.01252 -9.78256 -9.38249 -9.07535 -8.80968 -8.65543 -7.43532 -6.93355 -6.67123 -4.35431 1.73582 2.49079 2.79176 2.99131 3.09876 3.14324 3.21056 3.68335 3.77402 3.92410 3.98130 4.22095 4.46986 4.65755 4.68055 4.83276 4.93529 5.01860 5.06796 5.11046 5.20515 5.26559 5.38820 5.59542 5.69380 5.69688 5.71443 5.87375 5.90838 6.03427 6.20743 6.23754 6.38297 6.69096 6.91752 7.00561 7.05432 7.24091 7.33000 7.48734 7.60805 7.68724 7.92370 7.94437 8.07824 8.16053 8.26432 8.53500 8.67486 8.93275 8.96728 10.26486 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.002981 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.519267 B = 9390.286082 C =10483.848461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.131 4.131 5 C 0.094 3.906 6 N -0.593 5.593 7 C 0.518 3.482 8 O -0.486 6.486 9 C 0.497 3.503 10 O -0.496 6.496 11 N -0.636 5.636 12 C 0.145 3.855 13 C -0.252 4.252 14 C -0.094 4.094 15 C -0.165 4.165 16 C 0.119 3.881 17 C -0.457 4.457 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.801 5.801 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.205 4.205 26 C 0.142 3.858 27 H 0.085 0.915 28 C 0.064 3.936 29 O -0.539 6.539 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.410 0.590 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.279 0.721 42 H 0.106 0.894 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.775 11.042 -4.333 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.169 4.169 5 C -0.028 4.028 6 N -0.329 5.329 7 C 0.301 3.699 8 O -0.358 6.358 9 C 0.278 3.722 10 O -0.370 6.370 11 N -0.281 5.281 12 C 0.053 3.947 13 C -0.274 4.274 14 C -0.113 4.113 15 C -0.184 4.184 16 C 0.116 3.884 17 C -0.488 4.488 18 H 0.094 0.906 19 C -0.143 4.143 20 N -0.427 5.427 21 Si 0.736 3.264 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.227 4.227 26 C 0.039 3.961 27 H 0.102 0.898 28 C -0.015 4.015 29 O -0.342 6.342 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.246 0.754 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.124 0.876 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.753 10.328 -3.659 19.189 hybrid contribution 0.513 0.765 -0.208 0.944 sum -15.240 11.092 -3.867 19.242 Atomic orbital electron populations 1.21770 0.93409 1.02501 1.02226 1.22201 0.96486 0.99433 0.93677 0.89402 1.22953 0.96259 1.00337 0.97331 1.22673 0.96585 1.03133 0.80425 1.48267 1.29239 1.43578 1.11850 1.19908 0.83602 0.80265 0.86149 1.90811 1.69240 1.61002 1.14788 1.20042 0.83885 0.81466 0.86774 1.90766 1.69218 1.61785 1.15267 1.43133 1.24211 1.44316 1.16409 1.17449 0.85836 0.92765 0.98611 1.20098 1.02880 0.94637 1.09743 1.20494 0.95163 0.97905 0.97698 1.21442 1.01199 0.96934 0.98851 1.17490 0.89241 0.91913 0.89804 1.19526 1.22783 0.94570 1.11874 0.90557 1.25879 0.96433 0.94847 0.97145 1.69797 1.34845 1.08749 1.29285 0.86268 0.80039 0.80113 0.80006 1.19529 1.20178 1.18570 1.20976 0.96485 1.00819 1.04397 1.21771 0.87970 0.93056 0.93286 0.89751 1.22553 0.98188 0.93458 0.87296 1.86928 1.88176 1.35391 1.23688 0.91735 0.92318 0.92117 0.90310 0.89442 0.91049 0.87650 0.75441 0.88993 0.88815 0.85960 0.90992 0.87564 0.93104 0.93720 0.78686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.16 37.16 0.34 -0.51 16 2 C -0.10 -0.76 3.06 -88.79 -0.27 -1.03 16 3 H 0.09 0.59 7.85 -51.93 -0.41 0.18 16 4 C -0.13 -1.12 6.53 -24.58 -0.16 -1.28 16 5 C 0.09 1.17 6.06 -2.53 -0.02 1.16 16 6 N -0.59 -8.34 3.08 -163.36 -0.50 -8.85 16 7 C 0.52 8.89 7.67 -11.63 -0.09 8.80 16 8 O -0.49 -8.90 13.82 -18.50 -0.26 -9.15 16 9 C 0.50 9.70 7.58 -11.63 -0.09 9.62 16 10 O -0.50 -10.75 11.49 5.47 0.06 -10.68 16 11 N -0.64 -12.57 5.32 -10.34 -0.06 -12.63 16 12 C 0.14 3.36 6.26 -83.82 -0.52 2.84 16 13 C -0.25 -5.68 9.97 -39.08 -0.39 -6.07 16 14 C -0.09 -2.20 10.01 -39.69 -0.40 -2.59 16 15 C -0.16 -4.31 8.66 -38.83 -0.34 -4.65 16 16 C 0.12 3.24 5.55 -106.85 -0.59 2.65 16 17 C -0.46 -12.44 9.06 -37.74 -0.34 -12.78 16 18 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 19 C 0.07 1.88 5.25 -17.34 -0.09 1.79 16 20 N -0.80 -21.03 10.81 55.55 0.60 -20.43 16 21 Si 0.91 19.03 29.57 -169.99 -5.03 14.01 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.21 -5.31 8.39 -38.67 -0.32 -5.63 16 26 C 0.14 1.57 2.89 -66.81 -0.19 1.37 16 27 H 0.08 1.01 7.80 -51.93 -0.40 0.60 16 28 C 0.06 0.65 6.47 37.16 0.24 0.89 16 29 O -0.54 -6.82 10.41 -59.22 -0.62 -7.43 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 33 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 1.56 6.15 -51.93 -0.32 1.24 16 37 H 0.41 7.11 8.30 -40.82 -0.34 6.77 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.12 3.28 6.18 -52.49 -0.32 2.96 16 41 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.11 2.78 6.44 -52.49 -0.34 2.44 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.37 3.08 9.12 45.56 0.42 3.50 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -32.30 367.51 -8.98 -41.28 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -5.49 Total: 13.77 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.24 Total: -5.42 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.04 Total: -41.90 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.81 Total: -27.27 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.30 -8.98 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453728556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.847 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds