Wall clock time and date at job start Tue Mar 31 2020 17:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.64369 * 2 1 4 4 C 1.55156 * 110.72025 * 123.14122 * 2 1 3 5 5 C 1.54907 * 101.58298 * 154.04297 * 4 2 1 6 6 N 1.47430 * 104.92783 * 322.93595 * 5 4 2 7 7 C 1.34770 * 125.64690 * 204.15870 * 6 5 4 8 8 O 1.21362 * 120.00239 * 180.02562 * 7 6 5 9 9 C 1.49353 * 120.00456 * 0.02562 * 7 6 5 10 10 O 1.21384 * 119.99782 * 0.02562 * 9 7 6 11 11 N 1.34772 * 120.00555 * 180.02562 * 9 7 6 12 12 C 1.39740 * 120.00572 * 174.87132 * 11 9 7 13 13 C 1.39346 * 119.95485 * 146.32940 * 12 11 9 14 14 C 1.38468 * 120.42258 * 179.97438 * 13 12 11 15 15 C 1.37697 * 120.32864 * 359.97438 * 14 13 12 16 16 C 1.40749 * 119.89975 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.21162 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00209 * 151.81820 * 17 16 15 19 19 C 1.39936 * 119.99736 * 331.81228 * 17 16 15 20 20 N 1.30827 * 120.00059 * 348.99174 * 19 17 16 21 21 Si 1.86795 * 119.99734 * 168.98947 * 19 17 16 22 22 H 1.48500 * 109.47092 * 90.00270 * 21 19 17 23 23 H 1.48503 * 109.47239 * 210.00123 * 21 19 17 24 24 H 1.48503 * 109.47463 * 330.00024 * 21 19 17 25 25 C 1.38299 * 119.95161 * 326.05705 * 12 11 9 26 26 C 1.47291 * 108.55702 * 24.15380 * 6 5 4 27 27 H 1.08992 * 109.85552 * 239.50032 * 26 6 5 28 28 C 1.52997 * 109.99971 * 118.43170 * 26 6 5 29 29 O 1.42898 * 109.47381 * 67.07392 * 28 26 6 30 30 H 1.08995 * 109.46889 * 298.31101 * 1 2 3 31 31 H 1.09005 * 109.46998 * 58.30866 * 1 2 3 32 32 H 1.08997 * 109.47010 * 178.31298 * 1 2 3 33 33 H 1.09003 * 111.00390 * 35.97013 * 4 2 1 34 34 H 1.09001 * 111.04001 * 272.13229 * 4 2 1 35 35 H 1.08996 * 110.36788 * 81.83187 * 5 4 2 36 36 H 1.09004 * 110.36812 * 204.04733 * 5 4 2 37 37 H 0.96999 * 119.99737 * 354.86332 * 11 9 7 38 38 H 1.08000 * 119.78824 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.84072 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.05205 * 180.02562 * 15 14 13 41 41 H 0.96998 * 120.00136 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.16432 * 0.02562 * 25 12 11 43 43 H 1.08997 * 109.47064 * 187.07737 * 28 26 6 44 44 H 1.09006 * 109.47399 * 307.07781 * 28 26 6 45 45 H 0.96699 * 114.00612 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7934 1.2151 5 6 3.4652 -1.2447 0.6914 6 7 3.2515 -1.5489 -0.7353 7 6 4.0033 -2.3817 -1.4819 8 8 3.7342 -2.5575 -2.6522 9 6 5.1677 -3.0884 -0.8693 10 8 5.4367 -2.9131 0.3013 11 7 5.9199 -3.9209 -1.6161 12 6 7.0710 -4.4986 -1.0739 13 6 7.4514 -5.7832 -1.4570 14 6 8.5904 -6.3648 -0.9263 15 6 9.3605 -5.6792 -0.0137 16 6 8.9890 -4.3808 0.3830 17 6 9.7748 -3.6710 1.3201 18 1 9.7964 -2.5915 1.2991 19 6 10.5242 -4.3673 2.2750 20 7 10.3368 -5.6510 2.4446 21 14 11.7921 -3.4641 3.3073 22 1 11.1501 -2.9545 4.5456 23 1 12.8918 -4.3950 3.6670 24 1 12.3425 -2.3246 2.5302 25 6 7.8341 -3.7924 -0.1620 26 6 2.0798 -0.7906 -1.2059 27 1 1.3191 -1.4773 -1.5770 28 6 2.4941 0.1764 -2.3169 29 8 2.8921 -0.5664 -3.4710 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5399 -0.8745 32 1 -0.3633 -1.0272 -0.0303 33 1 1.4469 -1.6529 1.4383 34 1 2.1820 -0.1496 2.0886 35 1 4.1929 -0.4410 0.8030 36 1 3.8001 -2.1353 1.2231 37 1 5.6621 -4.1191 -2.5299 38 1 6.8544 -6.3284 -2.1732 39 1 8.8767 -7.3608 -1.2302 40 1 10.2483 -6.1369 0.3971 41 1 10.8565 -6.1337 3.1062 42 1 7.5425 -2.7952 0.1328 43 1 1.6518 0.8196 -2.5714 44 1 3.3280 0.7886 -1.9735 45 1 3.1680 -0.0163 -4.2169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453728556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:46 Heat of formation + Delta-G solvation = -108.526708 kcal Electronic energy + Delta-G solvation = -28628.306811 eV Core-core repulsion = 24609.884396 eV Total energy + Delta-G solvation = -4018.422416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.09407 -40.67979 -39.12247 -38.67547 -37.21928 -36.35301 -34.90933 -33.90321 -31.78996 -31.36399 -30.31988 -28.98595 -27.30071 -26.06217 -24.82091 -23.62939 -22.91331 -22.27480 -21.30930 -20.58060 -19.57738 -18.64377 -18.12965 -18.02523 -17.49141 -17.33166 -16.84199 -16.54519 -16.39429 -15.77708 -15.42182 -15.34884 -14.94293 -14.81205 -14.69571 -14.37643 -14.12300 -14.00765 -13.72076 -13.62007 -13.33419 -13.15295 -12.85858 -12.75360 -12.67340 -12.62631 -12.51017 -12.23955 -11.94580 -11.86712 -11.70755 -11.63187 -11.56335 -11.22683 -10.90354 -10.88158 -10.39641 -9.80476 -9.40220 -8.81760 -8.59350 -6.39764 0.20545 0.94097 1.04199 1.26386 1.37943 1.49286 1.53168 2.16640 2.22270 2.46256 2.74386 3.16402 3.26133 3.52900 3.69741 3.70942 4.00820 4.12454 4.23819 4.39576 4.39913 4.42182 4.51390 4.54990 4.56721 4.76620 4.88486 4.93908 4.96772 5.04287 5.05769 5.07647 5.09181 5.10341 5.16801 5.28371 5.31023 5.43573 5.62647 5.77028 6.02769 6.05413 6.11822 6.27915 6.32273 6.63872 6.76606 6.89991 6.94484 6.96020 7.02968 8.36630 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.002981 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.519267 B = 9390.286082 C =10483.848461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.106 0.894 4 C -0.120 4.120 5 C 0.087 3.913 6 N -0.588 5.588 7 C 0.521 3.479 8 O -0.500 6.500 9 C 0.493 3.507 10 O -0.522 6.522 11 N -0.631 5.631 12 C 0.149 3.851 13 C -0.245 4.245 14 C -0.091 4.091 15 C -0.188 4.188 16 C 0.090 3.910 17 C -0.498 4.498 18 H 0.069 0.931 19 C 0.033 3.967 20 N -0.830 5.830 21 Si 0.986 3.014 22 H -0.264 1.264 23 H -0.262 1.262 24 H -0.260 1.260 25 C -0.227 4.227 26 C 0.133 3.867 27 H 0.075 0.925 28 C 0.063 3.937 29 O -0.570 6.570 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.423 0.577 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.288 0.712 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.350 12.164 -4.396 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.124 0.876 4 C -0.158 4.158 5 C -0.035 4.035 6 N -0.323 5.323 7 C 0.302 3.698 8 O -0.375 6.375 9 C 0.276 3.724 10 O -0.397 6.397 11 N -0.277 5.277 12 C 0.057 3.943 13 C -0.266 4.266 14 C -0.109 4.109 15 C -0.208 4.208 16 C 0.087 3.913 17 C -0.528 4.528 18 H 0.087 0.913 19 C -0.181 4.181 20 N -0.456 5.456 21 Si 0.806 3.194 22 H -0.189 1.189 23 H -0.186 1.186 24 H -0.183 1.183 25 C -0.249 4.249 26 C 0.031 3.969 27 H 0.093 0.907 28 C -0.016 4.016 29 O -0.376 6.376 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.261 0.739 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -17.374 11.471 -3.744 21.154 hybrid contribution 0.881 0.401 -0.250 0.999 sum -16.494 11.872 -3.994 20.711 Atomic orbital electron populations 1.21764 0.91636 1.02518 1.03611 1.22236 0.97705 0.99464 0.91110 0.87566 1.22950 0.93403 1.00977 0.98500 1.22756 0.99315 1.01871 0.79555 1.48402 1.29166 1.42383 1.12336 1.19372 0.83338 0.81006 0.86094 1.90803 1.69613 1.61991 1.15083 1.20661 0.84386 0.80904 0.86479 1.90764 1.70054 1.62376 1.16529 1.43058 1.23302 1.44351 1.17038 1.17532 0.86258 0.92977 0.97543 1.20495 1.02538 0.94173 1.09438 1.20847 0.94727 0.99009 0.96357 1.21424 1.01831 0.97072 1.00505 1.17827 0.90011 0.92904 0.90543 1.19754 1.24979 0.94499 1.13539 0.91318 1.26741 0.97846 0.95657 0.97826 1.69846 1.35673 1.10084 1.30030 0.85154 0.77314 0.78899 0.78004 1.18917 1.18611 1.18336 1.20929 0.97152 1.00653 1.06158 1.22171 0.86359 0.93207 0.95199 0.90670 1.22667 0.99379 0.93195 0.86338 1.86872 1.88517 1.37217 1.24962 0.90100 0.91214 0.92814 0.90195 0.87009 0.91135 0.90537 0.73898 0.85353 0.85630 0.87254 0.90128 0.89169 0.89711 0.93837 0.76906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.16 71.98 0.66 -0.52 16 2 C -0.09 -1.08 3.06 -9.61 -0.03 -1.11 16 3 H 0.11 1.01 7.85 -2.39 -0.02 0.99 16 4 C -0.12 -1.83 6.53 31.99 0.21 -1.62 16 5 C 0.09 2.17 6.06 86.85 0.53 2.70 16 6 N -0.59 -16.40 3.08 -789.11 -2.43 -18.82 16 7 C 0.52 18.03 7.67 87.24 0.67 18.69 16 8 O -0.50 -18.27 13.82 19.65 0.27 -18.00 16 9 C 0.49 19.77 7.58 87.24 0.66 20.43 16 10 O -0.52 -23.65 11.49 -3.35 -0.04 -23.69 16 11 N -0.63 -25.15 5.32 -304.98 -1.62 -26.77 16 12 C 0.15 7.02 6.26 38.16 0.24 7.26 16 13 C -0.25 -10.76 9.97 22.59 0.23 -10.54 16 14 C -0.09 -4.20 10.01 22.20 0.22 -3.98 16 15 C -0.19 -10.16 8.66 22.76 0.20 -9.96 16 16 C 0.09 5.14 5.55 -21.31 -0.12 5.02 16 17 C -0.50 -28.40 9.06 23.46 0.21 -28.19 16 18 H 0.07 3.84 7.87 -2.92 -0.02 3.82 16 19 C 0.03 1.73 5.25 85.25 0.45 2.18 16 20 N -0.83 -44.65 10.81 21.82 0.24 -44.41 16 21 Si 0.99 39.62 29.57 68.60 2.03 41.65 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 25 C -0.23 -12.27 8.39 22.86 0.19 -12.08 16 26 C 0.13 2.70 2.89 45.29 0.13 2.83 16 27 H 0.08 1.70 7.80 -2.39 -0.02 1.68 16 28 C 0.06 1.15 6.47 71.98 0.47 1.62 16 29 O -0.57 -13.78 10.41 -126.04 -1.31 -15.10 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.55 8.10 -2.39 -0.02 0.54 16 33 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 2.37 6.15 -2.39 -0.01 2.36 16 37 H 0.42 14.46 8.30 -92.71 -0.77 13.69 16 38 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16 40 H 0.11 6.09 6.18 -2.91 -0.02 6.07 16 41 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 42 H 0.09 5.04 6.44 -2.91 -0.02 5.02 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.04 0.80 8.14 -2.38 -0.02 0.79 16 45 H 0.38 6.01 9.12 -74.06 -0.68 5.33 16 Total: -1.00 -73.24 367.51 1.64 -71.60 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.41 Total: 40.79 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 4.91 Total: -7.25 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -3.81 Total: -90.01 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -1.08 Total: -56.78 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -73.24 1.64 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453728556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.926 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds