Wall clock time and date at job start Tue Mar 31 2020 17:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.67642 * 2 1 4 4 C 1.55000 * 110.61683 * 237.03653 * 2 1 3 5 5 C 1.54812 * 102.08913 * 204.47603 * 4 2 1 6 6 C 1.54099 * 104.18779 * 20.87934 * 5 4 2 7 7 H 1.09003 * 109.88122 * 242.45250 * 6 5 4 8 8 C 1.53005 * 109.87694 * 121.45595 * 6 5 4 9 9 N 1.46500 * 109.47055 * 180.02562 * 8 6 5 10 10 C 1.34777 * 119.99882 * 180.02562 * 9 8 6 11 11 O 1.21363 * 119.99824 * 359.97438 * 10 9 8 12 12 C 1.49348 * 119.99929 * 180.02562 * 10 9 8 13 13 O 1.21373 * 120.00285 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99929 * 180.02562 * 12 10 9 15 15 C 1.39751 * 119.99815 * 183.16538 * 14 12 10 16 16 C 1.39337 * 119.95299 * 322.58031 * 15 14 12 17 17 C 1.38476 * 120.42404 * 180.02562 * 16 15 14 18 18 C 1.37694 * 120.32284 * 359.71740 * 17 16 15 19 19 C 1.40743 * 119.89843 * 0.57700 * 18 17 16 20 20 C 1.41415 * 120.20674 * 179.69535 * 19 18 17 21 21 H 1.08003 * 119.99765 * 157.77562 * 20 19 18 22 22 C 1.39925 * 120.00159 * 337.50862 * 20 19 18 23 23 N 1.30831 * 119.99697 * 328.92424 * 22 20 19 24 24 Si 1.86800 * 120.00402 * 148.92807 * 22 20 19 25 25 H 1.48508 * 109.47045 * 94.98061 * 24 22 20 26 26 H 1.48494 * 109.47310 * 214.98418 * 24 22 20 27 27 H 1.48501 * 109.47022 * 334.98605 * 24 22 20 28 28 C 1.38302 * 119.94781 * 142.60163 * 15 14 12 29 29 O 1.43739 * 107.29453 * 2.03389 * 6 5 4 30 30 H 1.09004 * 109.47123 * 182.95975 * 1 2 3 31 31 H 1.08999 * 109.47253 * 302.96411 * 1 2 3 32 32 H 1.09001 * 109.47193 * 62.96485 * 1 2 3 33 33 H 1.09000 * 110.90840 * 86.28154 * 4 2 1 34 34 H 1.08997 * 110.90593 * 322.67294 * 4 2 1 35 35 H 1.09008 * 110.48754 * 262.20559 * 5 4 2 36 36 H 1.08997 * 110.60126 * 139.61422 * 5 4 2 37 37 H 1.09000 * 109.47112 * 59.99855 * 8 6 5 38 38 H 1.08999 * 109.47050 * 300.00245 * 8 6 5 39 39 H 0.96997 * 119.99657 * 359.97438 * 9 8 6 40 40 H 0.96991 * 120.00376 * 3.15820 * 14 12 10 41 41 H 1.07997 * 119.78766 * 0.02562 * 16 15 14 42 42 H 1.07996 * 119.83339 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.05158 * 180.30163 * 18 17 16 44 44 H 0.97005 * 119.99810 * 180.02562 * 23 22 20 45 45 H 1.08000 * 120.16858 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4794 -1.2167 -0.7235 6 6 3.3838 -1.1254 0.8118 7 1 4.0872 -0.3801 1.1833 8 6 3.6934 -2.4884 1.4343 9 7 3.5995 -2.3916 2.8931 10 6 3.8338 -3.4771 3.6569 11 8 4.1221 -4.5347 3.1361 12 6 3.7374 -3.3786 5.1440 13 8 3.4486 -2.3210 5.6648 14 7 3.9722 -4.4640 5.9078 15 6 3.8176 -4.3890 7.2947 16 6 4.1893 -3.2309 7.9746 17 6 4.0408 -3.1463 9.3487 18 6 3.5184 -4.2046 10.0580 19 6 3.1443 -5.3832 9.3859 20 6 2.6131 -6.4764 10.1087 21 1 2.0070 -7.2141 9.6039 22 6 2.8774 -6.6054 11.4767 23 7 4.0064 -6.1642 11.9692 24 14 1.6185 -7.4075 12.5998 25 1 1.9457 -8.8470 12.7617 26 1 1.6438 -6.7417 13.9269 27 1 0.2654 -7.2715 12.0034 28 6 3.2963 -5.4646 7.9904 29 8 2.0383 -0.7354 1.1337 30 1 -0.3633 -1.0263 0.0531 31 1 -0.3634 0.5592 0.8622 32 1 -0.3634 0.4671 -0.9154 33 1 2.1509 -0.1476 -2.0950 34 1 1.4549 -1.6606 -1.4259 35 1 4.2407 -0.5331 -1.0997 36 1 3.6998 -2.2387 -1.0320 37 1 4.7012 -2.7952 1.1542 38 1 2.9757 -3.2246 1.0723 39 1 3.3694 -1.5462 3.3092 40 1 4.2483 -5.2970 5.4950 41 1 4.5957 -2.3939 7.4263 42 1 4.3316 -2.2439 9.8660 43 1 3.4000 -4.1320 11.1291 44 1 4.1898 -6.2540 12.9175 45 1 3.0086 -6.3631 7.4647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454109952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:55 Heat of formation + Delta-G solvation = -100.985174 kcal Electronic energy + Delta-G solvation = -27183.508624 eV Core-core repulsion = 23165.413233 eV Total energy + Delta-G solvation = -4018.095390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.73 seconds Orbital eigenvalues (eV) -40.65284 -39.98654 -38.62190 -37.11843 -35.40030 -34.39517 -33.12115 -32.70123 -32.11557 -29.89700 -28.82959 -28.23017 -25.37253 -25.05743 -23.41811 -21.77049 -21.60293 -21.15537 -20.84197 -19.75569 -18.37582 -17.65503 -17.16662 -16.47026 -16.39498 -15.78523 -15.54917 -15.47598 -14.96101 -14.80453 -14.57337 -14.32779 -14.04920 -13.80081 -13.36482 -13.15444 -12.92317 -12.86223 -12.60185 -12.38397 -12.29783 -12.12925 -11.75267 -11.69493 -11.56453 -11.34060 -11.31027 -11.12497 -11.09689 -10.71188 -10.54473 -10.11354 -10.07678 -9.79385 -9.43061 -9.34352 -9.14308 -8.87664 -7.54046 -7.03557 -6.90477 -4.34683 1.55468 2.48233 2.78650 2.88249 3.06985 3.10374 3.23902 3.30217 3.55821 3.89338 3.93565 4.04899 4.20734 4.41745 4.47616 4.52867 4.73003 4.74045 4.85650 4.95282 5.05729 5.12444 5.28474 5.30386 5.41963 5.51917 5.61995 5.63938 5.65835 5.78450 6.09546 6.24867 6.50150 6.53037 6.64181 6.86308 6.90241 6.98275 7.13010 7.16931 7.49411 7.58455 7.79112 7.94998 7.99543 8.06232 8.23603 8.41065 8.60075 8.84492 8.92989 10.06694 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024814 B = 0.001955 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.105235 B =14322.445309 C =14518.475677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.064 3.936 7 H 0.079 0.921 8 C 0.121 3.879 9 N -0.698 5.698 10 C 0.511 3.489 11 O -0.525 6.525 12 C 0.498 3.502 13 O -0.505 6.505 14 N -0.632 5.632 15 C 0.149 3.851 16 C -0.230 4.230 17 C -0.089 4.089 18 C -0.176 4.176 19 C 0.125 3.875 20 C -0.471 4.471 21 H 0.081 0.919 22 C 0.088 3.912 23 N -0.773 5.773 24 Si 0.897 3.103 25 H -0.270 1.270 26 H -0.274 1.274 27 H -0.258 1.258 28 C -0.243 4.243 29 O -0.365 6.365 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.417 0.583 40 H 0.412 0.588 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.283 0.717 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 10.162 -22.505 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.089 0.911 4 C -0.189 4.189 5 C -0.187 4.187 6 C 0.006 3.994 7 H 0.097 0.903 8 C -0.002 4.002 9 N -0.352 5.352 10 C 0.292 3.708 11 O -0.401 6.401 12 C 0.279 3.721 13 O -0.380 6.380 14 N -0.277 5.277 15 C 0.058 3.942 16 C -0.251 4.251 17 C -0.109 4.109 18 C -0.195 4.195 19 C 0.122 3.878 20 C -0.499 4.499 21 H 0.099 0.901 22 C -0.133 4.133 23 N -0.396 5.396 24 Si 0.721 3.279 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.182 1.182 28 C -0.264 4.264 29 O -0.284 6.284 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.254 0.746 40 H 0.248 0.752 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.489 10.125 -22.142 24.393 hybrid contribution -0.276 -0.353 0.353 0.570 sum -1.765 9.772 -21.789 23.945 Atomic orbital electron populations 1.21777 0.92954 1.03244 1.02509 1.23160 0.95450 0.95267 0.84763 0.91105 1.23198 0.96031 1.01044 0.98589 1.22914 0.98216 1.03545 0.94017 1.22989 0.85846 0.95720 0.94876 0.90346 1.21697 1.02591 0.96604 0.79323 1.45619 1.69424 1.13487 1.06644 1.20303 0.77923 0.84198 0.88364 1.90744 1.46493 1.28110 1.74794 1.19938 0.79722 0.85241 0.87228 1.90776 1.45555 1.27732 1.73909 1.43161 1.64487 1.13472 1.06586 1.17454 1.00862 0.96783 0.79084 1.20302 1.12784 0.98036 0.93997 1.20526 0.99533 0.97506 0.93286 1.21148 1.06155 0.93103 0.99136 1.17305 0.88087 0.92301 0.90078 1.19459 1.28881 1.08544 0.93003 0.90088 1.25900 0.94459 0.93891 0.99078 1.69925 1.19765 1.34500 1.15381 0.86492 0.82604 0.79538 0.79306 1.19529 1.19917 1.18156 1.20688 1.12536 0.98023 0.95193 1.88976 1.26971 1.73450 1.39043 0.91614 0.91642 0.91119 0.90065 0.90179 0.90059 0.89767 0.89715 0.90299 0.74605 0.75164 0.87876 0.88907 0.87493 0.90630 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.65 37.16 0.36 -0.59 16 2 C 0.07 0.50 3.98 -25.68 -0.10 0.39 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.15 -0.80 6.59 -24.72 -0.16 -0.97 16 5 C -0.15 -0.80 6.64 -25.20 -0.17 -0.97 16 6 C 0.06 0.49 3.49 -26.15 -0.09 0.40 16 7 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 8 C 0.12 1.17 5.15 -4.04 -0.02 1.15 16 9 N -0.70 -8.74 5.47 -60.76 -0.33 -9.08 16 10 C 0.51 8.01 7.89 -11.63 -0.09 7.91 16 11 O -0.53 -8.92 16.48 5.49 0.09 -8.83 16 12 C 0.50 9.21 7.70 -11.63 -0.09 9.12 16 13 O -0.50 -10.39 14.09 5.48 0.08 -10.31 16 14 N -0.63 -12.31 5.31 -10.34 -0.05 -12.36 16 15 C 0.15 3.47 6.23 -83.82 -0.52 2.95 16 16 C -0.23 -5.50 8.68 -39.08 -0.34 -5.84 16 17 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 18 C -0.18 -4.59 8.78 -38.83 -0.34 -4.94 16 19 C 0.13 3.35 5.56 -106.85 -0.59 2.75 16 20 C -0.47 -12.41 8.96 -37.74 -0.34 -12.75 16 21 H 0.08 2.06 8.01 -52.48 -0.42 1.64 16 22 C 0.09 2.19 4.81 -17.35 -0.08 2.10 16 23 N -0.77 -19.70 11.72 55.55 0.65 -19.05 16 24 Si 0.90 18.35 29.66 -169.99 -5.04 13.31 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 28 C -0.24 -6.00 9.71 -38.67 -0.38 -6.38 16 29 O -0.36 -3.58 10.75 -35.23 -0.38 -3.96 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 35 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 36 H 0.08 0.41 7.70 -51.93 -0.40 0.01 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.42 5.12 7.89 -40.82 -0.32 4.80 16 40 H 0.41 7.14 8.30 -40.82 -0.34 6.80 16 41 H 0.10 2.39 6.43 -52.49 -0.34 2.06 16 42 H 0.09 2.01 8.06 -52.49 -0.42 1.58 16 43 H 0.11 2.83 6.51 -52.48 -0.34 2.49 16 44 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 45 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -30.76 379.21 -9.00 -39.76 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.36 Total: 13.01 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.36 Total: -8.20 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.26 Total: -40.49 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.21 Total: -23.10 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.04 Total: 13.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.76 -9.00 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454109952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.227 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.73 seconds