Wall clock time and date at job start Tue Mar 31 2020 17:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.67642 * 2 1 4 4 C 1.55000 * 110.61683 * 237.03653 * 2 1 3 5 5 C 1.54812 * 102.08913 * 204.47603 * 4 2 1 6 6 C 1.54099 * 104.18779 * 20.87934 * 5 4 2 7 7 H 1.09003 * 109.88122 * 242.45250 * 6 5 4 8 8 C 1.53005 * 109.87694 * 121.45595 * 6 5 4 9 9 N 1.46500 * 109.47055 * 180.02562 * 8 6 5 10 10 C 1.34777 * 119.99882 * 180.02562 * 9 8 6 11 11 O 1.21363 * 119.99824 * 359.97438 * 10 9 8 12 12 C 1.49348 * 119.99929 * 180.02562 * 10 9 8 13 13 O 1.21373 * 120.00285 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99929 * 180.02562 * 12 10 9 15 15 C 1.39751 * 119.99815 * 183.16538 * 14 12 10 16 16 C 1.39337 * 119.95299 * 322.58031 * 15 14 12 17 17 C 1.38476 * 120.42404 * 180.02562 * 16 15 14 18 18 C 1.37694 * 120.32284 * 359.71740 * 17 16 15 19 19 C 1.40743 * 119.89843 * 0.57700 * 18 17 16 20 20 C 1.41415 * 120.20674 * 179.69535 * 19 18 17 21 21 H 1.08003 * 119.99765 * 157.77562 * 20 19 18 22 22 C 1.39925 * 120.00159 * 337.50862 * 20 19 18 23 23 N 1.30831 * 119.99697 * 328.92424 * 22 20 19 24 24 Si 1.86800 * 120.00402 * 148.92807 * 22 20 19 25 25 H 1.48508 * 109.47045 * 94.98061 * 24 22 20 26 26 H 1.48494 * 109.47310 * 214.98418 * 24 22 20 27 27 H 1.48501 * 109.47022 * 334.98605 * 24 22 20 28 28 C 1.38302 * 119.94781 * 142.60163 * 15 14 12 29 29 O 1.43739 * 107.29453 * 2.03389 * 6 5 4 30 30 H 1.09004 * 109.47123 * 182.95975 * 1 2 3 31 31 H 1.08999 * 109.47253 * 302.96411 * 1 2 3 32 32 H 1.09001 * 109.47193 * 62.96485 * 1 2 3 33 33 H 1.09000 * 110.90840 * 86.28154 * 4 2 1 34 34 H 1.08997 * 110.90593 * 322.67294 * 4 2 1 35 35 H 1.09008 * 110.48754 * 262.20559 * 5 4 2 36 36 H 1.08997 * 110.60126 * 139.61422 * 5 4 2 37 37 H 1.09000 * 109.47112 * 59.99855 * 8 6 5 38 38 H 1.08999 * 109.47050 * 300.00245 * 8 6 5 39 39 H 0.96997 * 119.99657 * 359.97438 * 9 8 6 40 40 H 0.96991 * 120.00376 * 3.15820 * 14 12 10 41 41 H 1.07997 * 119.78766 * 0.02562 * 16 15 14 42 42 H 1.07996 * 119.83339 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.05158 * 180.30163 * 18 17 16 44 44 H 0.97005 * 119.99810 * 180.02562 * 23 22 20 45 45 H 1.08000 * 120.16858 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4794 -1.2167 -0.7235 6 6 3.3838 -1.1254 0.8118 7 1 4.0872 -0.3801 1.1833 8 6 3.6934 -2.4884 1.4343 9 7 3.5995 -2.3916 2.8931 10 6 3.8338 -3.4771 3.6569 11 8 4.1221 -4.5347 3.1361 12 6 3.7374 -3.3786 5.1440 13 8 3.4486 -2.3210 5.6648 14 7 3.9722 -4.4640 5.9078 15 6 3.8176 -4.3890 7.2947 16 6 4.1893 -3.2309 7.9746 17 6 4.0408 -3.1463 9.3487 18 6 3.5184 -4.2046 10.0580 19 6 3.1443 -5.3832 9.3859 20 6 2.6131 -6.4764 10.1087 21 1 2.0070 -7.2141 9.6039 22 6 2.8774 -6.6054 11.4767 23 7 4.0064 -6.1642 11.9692 24 14 1.6185 -7.4075 12.5998 25 1 1.9457 -8.8470 12.7617 26 1 1.6438 -6.7417 13.9269 27 1 0.2654 -7.2715 12.0034 28 6 3.2963 -5.4646 7.9904 29 8 2.0383 -0.7354 1.1337 30 1 -0.3633 -1.0263 0.0531 31 1 -0.3634 0.5592 0.8622 32 1 -0.3634 0.4671 -0.9154 33 1 2.1509 -0.1476 -2.0950 34 1 1.4549 -1.6606 -1.4259 35 1 4.2407 -0.5331 -1.0997 36 1 3.6998 -2.2387 -1.0320 37 1 4.7012 -2.7952 1.1542 38 1 2.9757 -3.2246 1.0723 39 1 3.3694 -1.5462 3.3092 40 1 4.2483 -5.2970 5.4950 41 1 4.5957 -2.3939 7.4263 42 1 4.3316 -2.2439 9.8660 43 1 3.4000 -4.1320 11.1291 44 1 4.1898 -6.2540 12.9175 45 1 3.0086 -6.3631 7.4647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454109952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:52 Heat of formation + Delta-G solvation = -121.202052 kcal Electronic energy + Delta-G solvation = -27184.385293 eV Core-core repulsion = 23165.413233 eV Total energy + Delta-G solvation = -4018.972060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -42.00127 -40.75755 -40.00746 -38.87858 -36.66794 -35.91867 -34.90952 -33.23030 -32.79666 -31.83623 -30.43437 -29.19032 -27.22499 -26.22453 -24.40999 -22.95018 -22.59816 -22.35543 -22.11340 -21.19356 -19.82100 -19.36141 -18.02778 -17.57206 -17.36892 -17.28862 -16.80783 -16.72864 -16.59379 -16.36983 -15.73725 -15.50247 -15.04218 -14.86130 -14.71601 -14.61262 -14.14401 -13.98305 -13.72779 -13.54199 -13.37431 -13.21723 -12.93466 -12.92408 -12.83763 -12.59438 -12.52140 -12.29927 -12.16762 -11.89202 -11.76267 -11.64241 -11.56975 -11.20048 -10.82515 -10.67207 -10.62995 -10.39679 -9.49819 -8.90766 -8.78059 -6.33869 0.12160 0.94992 0.98457 1.27445 1.39254 1.48752 1.58539 2.08695 2.20244 2.53476 2.64284 2.82417 3.34958 3.52618 3.67157 3.67899 3.92825 4.00404 4.15920 4.31824 4.38792 4.46706 4.51295 4.55756 4.63483 4.73412 4.86780 4.87783 4.95721 4.96770 5.01670 5.04463 5.05956 5.11012 5.14632 5.22548 5.25845 5.28541 5.62210 5.71762 5.90196 5.98853 6.00724 6.06050 6.21381 6.41433 6.60343 6.67533 6.85017 6.89465 7.00405 8.22262 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024814 B = 0.001955 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.105235 B =14322.445309 C =14518.475677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.144 4.144 6 C 0.064 3.936 7 H 0.088 0.912 8 C 0.118 3.882 9 N -0.682 5.682 10 C 0.520 3.480 11 O -0.539 6.539 12 C 0.499 3.501 13 O -0.526 6.526 14 N -0.631 5.631 15 C 0.158 3.842 16 C -0.241 4.241 17 C -0.089 4.089 18 C -0.201 4.201 19 C 0.099 3.901 20 C -0.504 4.504 21 H 0.080 0.920 22 C 0.050 3.950 23 N -0.801 5.801 24 Si 0.974 3.026 25 H -0.259 1.259 26 H -0.264 1.264 27 H -0.260 1.260 28 C -0.259 4.259 29 O -0.396 6.396 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.419 0.581 40 H 0.422 0.578 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.294 0.706 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 10.660 -24.053 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.005 3.995 3 H 0.098 0.902 4 C -0.184 4.184 5 C -0.182 4.182 6 C 0.006 3.994 7 H 0.105 0.895 8 C -0.005 4.005 9 N -0.335 5.335 10 C 0.299 3.701 11 O -0.417 6.417 12 C 0.281 3.719 13 O -0.402 6.402 14 N -0.277 5.277 15 C 0.066 3.934 16 C -0.261 4.261 17 C -0.108 4.108 18 C -0.221 4.221 19 C 0.096 3.904 20 C -0.531 4.531 21 H 0.098 0.902 22 C -0.170 4.170 23 N -0.425 5.425 24 Si 0.794 3.206 25 H -0.183 1.183 26 H -0.188 1.188 27 H -0.184 1.184 28 C -0.280 4.280 29 O -0.316 6.316 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.256 0.744 40 H 0.260 0.740 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.573 10.644 -23.741 26.066 hybrid contribution -0.219 -0.428 0.735 0.878 sum -1.792 10.216 -23.007 25.237 Atomic orbital electron populations 1.21799 0.92980 1.02532 1.03141 1.23372 0.95583 0.95762 0.84768 0.90189 1.23191 0.95706 1.00978 0.98527 1.22937 0.98793 1.04514 0.91970 1.23078 0.85338 0.94536 0.96455 0.89462 1.21980 1.03336 0.98031 0.77124 1.45682 1.67444 1.12486 1.07869 1.19682 0.78657 0.84867 0.86857 1.90747 1.47809 1.28690 1.74437 1.20483 0.78456 0.84360 0.88626 1.90758 1.46202 1.28444 1.74757 1.43095 1.64789 1.14530 1.05300 1.17478 0.99189 0.95979 0.80804 1.20473 1.13111 0.98540 0.94022 1.20786 0.98505 0.97819 0.93649 1.21116 1.08288 0.93910 0.98763 1.17672 0.88612 0.92880 0.91211 1.19720 1.29909 1.09013 0.94483 0.90217 1.26749 0.95997 0.94304 0.99914 1.69934 1.21161 1.34998 1.16392 0.85339 0.79232 0.78921 0.77151 1.18349 1.18801 1.18394 1.20827 1.13282 0.99012 0.94928 1.88946 1.27986 1.73999 1.40695 0.92765 0.92706 0.89005 0.88006 0.90680 0.88127 0.89201 0.88203 0.90896 0.74352 0.73954 0.87161 0.86622 0.88609 0.89556 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.65 71.98 0.69 -1.06 16 2 C 0.06 0.77 3.98 31.28 0.12 0.89 16 3 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.15 -1.20 6.59 31.90 0.21 -0.99 16 5 C -0.14 -1.15 6.64 31.58 0.21 -0.94 16 6 C 0.06 0.86 3.49 30.97 0.11 0.97 16 7 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 8 C 0.12 2.06 5.15 86.38 0.44 2.51 16 9 N -0.68 -16.27 5.47 -464.50 -2.54 -18.81 16 10 C 0.52 15.78 7.89 87.24 0.69 16.47 16 11 O -0.54 -17.71 16.48 -3.29 -0.05 -17.76 16 12 C 0.50 18.22 7.70 87.24 0.67 18.89 16 13 O -0.53 -21.44 14.09 -3.32 -0.05 -21.49 16 14 N -0.63 -24.46 5.31 -304.99 -1.62 -26.08 16 15 C 0.16 7.39 6.23 38.16 0.24 7.63 16 16 C -0.24 -11.52 8.68 22.59 0.20 -11.33 16 17 C -0.09 -4.34 10.02 22.20 0.22 -4.12 16 18 C -0.20 -10.78 8.78 22.75 0.20 -10.58 16 19 C 0.10 5.45 5.56 -21.31 -0.12 5.33 16 20 C -0.50 -27.16 8.96 23.46 0.21 -26.95 16 21 H 0.08 4.16 8.01 -2.91 -0.02 4.14 16 22 C 0.05 2.48 4.81 85.25 0.41 2.89 16 23 N -0.80 -41.30 11.72 21.82 0.26 -41.04 16 24 Si 0.97 37.55 29.66 68.60 2.03 39.58 16 25 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 26 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 27 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 28 C -0.26 -13.06 9.71 22.86 0.22 -12.84 16 29 O -0.40 -7.33 10.75 -148.98 -1.60 -8.93 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.70 8.06 -2.39 -0.02 0.68 16 35 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.09 0.64 7.70 -2.39 -0.02 0.62 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.42 9.86 7.89 -92.71 -0.73 9.13 16 40 H 0.42 14.52 8.30 -92.71 -0.77 13.75 16 41 H 0.11 5.08 6.43 -2.91 -0.02 5.06 16 42 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 43 H 0.10 5.23 6.51 -2.91 -0.02 5.21 16 44 H 0.29 13.48 8.30 -92.70 -0.77 12.71 16 45 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -66.66 379.21 0.69 -65.97 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.47 Total: 41.80 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 4.73 Total: -13.23 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -3.90 Total: -85.94 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -1.70 Total: -48.19 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -66.66 0.69 -65.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454109952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.229 kcal (2) G-P(sol) polarization free energy of solvation -66.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds