Wall clock time and date at job start Tue Mar 31 2020 17:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.33574 * 2 1 4 4 C 1.54488 * 110.36968 * 122.24617 * 2 1 3 5 5 C 1.54509 * 104.06140 * 142.92227 * 4 2 1 6 6 C 1.54474 * 104.06375 * 0.02562 * 5 4 2 7 7 H 1.08999 * 110.37299 * 94.96409 * 6 5 4 8 8 C 1.53010 * 110.37107 * 217.19067 * 6 5 4 9 9 N 1.46500 * 109.46808 * 184.99791 * 8 6 5 10 10 C 1.34773 * 119.99637 * 180.02562 * 9 8 6 11 11 O 1.21362 * 120.00447 * 0.02562 * 10 9 8 12 12 C 1.49357 * 120.00075 * 180.02562 * 10 9 8 13 13 O 1.21373 * 119.99890 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00075 * 180.02562 * 12 10 9 15 15 C 1.39749 * 120.00262 * 185.13984 * 14 12 10 16 16 C 1.39342 * 119.95353 * 213.18486 * 15 14 12 17 17 C 1.38471 * 120.41953 * 179.97438 * 16 15 14 18 18 C 1.37695 * 120.33314 * 0.02562 * 17 16 15 19 19 C 1.40752 * 119.89279 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.20516 * 179.97438 * 19 18 17 21 21 H 1.07993 * 119.99768 * 334.28798 * 20 19 18 22 22 C 1.39930 * 119.99755 * 154.29639 * 20 19 18 23 23 N 1.30831 * 119.99692 * 334.13147 * 22 20 19 24 24 Si 1.86802 * 119.99939 * 154.14163 * 22 20 19 25 25 H 1.48505 * 109.46862 * 179.97438 * 24 22 20 26 26 H 1.48502 * 109.46910 * 299.99126 * 24 22 20 27 27 H 1.48499 * 109.47084 * 59.99308 * 24 22 20 28 28 C 1.38300 * 119.95139 * 33.41686 * 15 14 12 29 29 O 1.44418 * 110.46882 * 237.68072 * 2 1 3 30 30 H 1.08999 * 109.47664 * 297.75335 * 1 2 3 31 31 H 1.09007 * 109.46722 * 57.75152 * 1 2 3 32 32 H 1.09001 * 109.47303 * 177.75313 * 1 2 3 33 33 H 1.08996 * 110.50944 * 24.27420 * 4 2 1 34 34 H 1.08998 * 110.50694 * 261.56728 * 4 2 1 35 35 H 1.08999 * 110.50707 * 241.35847 * 5 4 2 36 36 H 1.08999 * 110.51205 * 118.64964 * 5 4 2 37 37 H 1.09000 * 109.46736 * 65.00063 * 8 6 5 38 38 H 1.08995 * 109.46798 * 305.00039 * 8 6 5 39 39 H 0.96996 * 120.00574 * 359.97438 * 9 8 6 40 40 H 0.97006 * 120.00624 * 5.14019 * 14 12 10 41 41 H 1.07996 * 119.79227 * 359.95953 * 16 15 14 42 42 H 1.08005 * 119.83292 * 179.97438 * 17 16 15 43 43 H 1.08000 * 120.05325 * 179.97438 * 18 17 16 44 44 H 0.96996 * 120.00417 * 354.27458 * 23 22 20 45 45 H 1.08005 * 120.16237 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0677 -0.7727 1.2249 5 6 3.3193 -1.5027 0.6884 6 6 3.3902 -1.0841 -0.7969 7 1 4.0558 -0.2297 -0.9190 8 6 3.8656 -2.2559 -1.6584 9 7 4.0399 -1.8058 -3.0416 10 6 4.4552 -2.6737 -3.9853 11 8 4.6843 -3.8282 -3.6894 12 6 4.6335 -2.2148 -5.3954 13 8 4.4040 -1.0603 -5.6915 14 7 5.0483 -3.0829 -6.3392 15 6 5.3184 -2.6311 -7.6338 16 6 5.0712 -3.4606 -8.7258 17 6 5.3348 -3.0226 -10.0127 18 6 5.8450 -1.7619 -10.2274 19 6 6.0999 -0.9127 -9.1342 20 6 6.6243 0.3831 -9.3471 21 1 7.2068 0.5912 -10.2324 22 6 6.3887 1.3957 -8.4105 23 7 5.3306 1.3434 -7.6428 24 14 7.5849 2.8223 -8.2565 25 1 7.1116 3.7532 -7.2007 26 1 8.9288 2.3045 -7.8944 27 1 7.6647 3.5434 -9.5522 28 6 5.8353 -1.3633 -7.8289 29 8 2.0350 -0.7234 -1.1434 30 1 -0.3634 0.4785 0.9094 31 1 -0.3633 0.5484 -0.8692 32 1 -0.3634 -1.0269 -0.0403 33 1 1.3282 -1.4915 1.5777 34 1 2.3409 -0.0818 2.0224 35 1 3.1986 -2.5824 0.7760 36 1 4.2114 -1.1728 1.2208 37 1 3.1242 -3.0543 -1.6268 38 1 4.8158 -2.6269 -1.2744 39 1 3.8558 -0.8834 -3.2784 40 1 5.1594 -4.0213 -6.1200 41 1 4.6717 -4.4514 -8.5675 42 1 5.1400 -3.6736 -10.8523 43 1 6.0493 -1.4251 -11.2330 44 1 4.6669 0.6492 -7.7784 45 1 6.0312 -0.7210 -6.9830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454109955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:10 Heat of formation + Delta-G solvation = -104.351978 kcal Electronic energy + Delta-G solvation = -27924.798332 eV Core-core repulsion = 23906.556946 eV Total energy + Delta-G solvation = -4018.241386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -40.57097 -39.89465 -38.62428 -37.15375 -35.36157 -34.42671 -33.25095 -32.60562 -32.01310 -29.32409 -28.88121 -28.24694 -25.21295 -24.94919 -23.36631 -21.88887 -21.38104 -21.26306 -20.74563 -19.62423 -18.53346 -17.72682 -17.08327 -16.44434 -16.36293 -15.70958 -15.54246 -15.49792 -14.85285 -14.65364 -14.21141 -14.14943 -13.98410 -13.85611 -13.45399 -13.26919 -12.90793 -12.78204 -12.45256 -12.31259 -12.13390 -12.04810 -11.81427 -11.61580 -11.48425 -11.27224 -11.20124 -11.05347 -11.02744 -10.56987 -10.36580 -10.14188 -10.07275 -9.63554 -9.44040 -9.27418 -9.00701 -8.84240 -7.57318 -7.27699 -6.92974 -4.37586 1.63167 2.55151 2.79289 2.87061 3.20393 3.29206 3.39793 3.41251 3.63934 3.94502 4.09578 4.14688 4.29132 4.51787 4.60140 4.64332 4.78789 4.80435 4.94309 5.03417 5.10996 5.17494 5.35885 5.40036 5.48123 5.53302 5.59848 5.67875 5.72140 5.83553 6.09686 6.18076 6.34466 6.55428 6.56112 6.77550 6.83433 6.96747 7.16443 7.40892 7.52366 7.74271 7.82436 7.87283 7.90987 8.10832 8.21385 8.27648 8.55638 8.80249 8.96156 10.19180 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.002930 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.786183 B = 9555.102803 C =11050.036510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.147 4.147 6 C 0.061 3.939 7 H 0.081 0.919 8 C 0.127 3.873 9 N -0.698 5.698 10 C 0.513 3.487 11 O -0.529 6.529 12 C 0.490 3.510 13 O -0.477 6.477 14 N -0.639 5.639 15 C 0.160 3.840 16 C -0.277 4.277 17 C -0.067 4.067 18 C -0.239 4.239 19 C 0.105 3.895 20 C -0.521 4.521 21 H 0.076 0.924 22 C 0.032 3.968 23 N -0.773 5.773 24 Si 1.064 2.936 25 H -0.274 1.274 26 H -0.276 1.276 27 H -0.277 1.277 28 C -0.214 4.214 29 O -0.362 6.362 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.418 0.582 40 H 0.410 0.590 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.308 0.692 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 -2.612 18.258 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.088 0.912 4 C -0.188 4.188 5 C -0.185 4.185 6 C 0.003 3.997 7 H 0.098 0.902 8 C 0.003 3.997 9 N -0.352 5.352 10 C 0.294 3.706 11 O -0.406 6.406 12 C 0.271 3.729 13 O -0.349 6.349 14 N -0.285 5.285 15 C 0.068 3.932 16 C -0.298 4.298 17 C -0.086 4.086 18 C -0.259 4.259 19 C 0.101 3.899 20 C -0.548 4.548 21 H 0.094 0.906 22 C -0.192 4.192 23 N -0.395 5.395 24 Si 0.888 3.112 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.203 1.203 28 C -0.235 4.235 29 O -0.282 6.282 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.255 0.745 40 H 0.245 0.755 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.122 0.878 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.150 -1.261 19.030 19.754 hybrid contribution -0.302 -1.527 -0.677 1.698 sum -5.452 -2.788 18.352 19.347 Atomic orbital electron populations 1.21801 0.93064 1.03033 1.02536 1.23004 0.95520 0.95550 0.84872 0.91158 1.23008 0.97547 0.99853 0.98408 1.22898 0.98956 1.01997 0.94649 1.23254 0.85680 0.96999 0.93783 0.90154 1.21523 1.01813 0.96195 0.80154 1.45662 1.66544 1.14912 1.08099 1.20304 0.77787 0.85650 0.86816 1.90722 1.49662 1.17828 1.82361 1.19999 0.80137 0.86752 0.86058 1.90925 1.46069 1.16936 1.80939 1.43110 1.64197 1.11936 1.09242 1.17509 0.99088 0.95336 0.81227 1.19978 1.17760 1.00210 0.91836 1.20344 0.98097 0.95436 0.94722 1.20954 1.11395 0.96113 0.97414 1.17530 0.88765 0.93198 0.90361 1.20533 1.30964 0.94944 1.08386 0.90623 1.26990 0.98443 1.02056 0.91756 1.70369 1.05548 1.31836 1.31710 0.83662 0.75423 0.74763 0.77377 1.19925 1.20179 1.20268 1.21166 1.08962 0.95511 0.97884 1.89241 1.26100 1.74536 1.38279 0.91174 0.91634 0.91754 0.90391 0.90417 0.90063 0.89985 0.90118 0.89564 0.74453 0.75462 0.88898 0.88808 0.88807 0.87758 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.52 37.16 0.35 -0.73 16 2 C 0.07 0.57 3.92 -25.95 -0.10 0.47 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -0.95 6.63 -25.16 -0.17 -1.12 16 5 C -0.15 -0.98 6.63 -25.17 -0.17 -1.15 16 6 C 0.06 0.56 3.32 -25.95 -0.09 0.48 16 7 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 8 C 0.13 1.38 5.28 -4.04 -0.02 1.36 16 9 N -0.70 -9.85 5.55 -60.76 -0.34 -10.19 16 10 C 0.51 8.72 7.89 -11.63 -0.09 8.63 16 11 O -0.53 -9.42 16.48 5.49 0.09 -9.33 16 12 C 0.49 9.86 7.62 -11.63 -0.09 9.78 16 13 O -0.48 -11.07 14.12 5.48 0.08 -10.99 16 14 N -0.64 -12.87 5.32 -10.34 -0.06 -12.92 16 15 C 0.16 3.79 6.27 -83.82 -0.53 3.26 16 16 C -0.28 -6.17 9.97 -39.09 -0.39 -6.56 16 17 C -0.07 -1.51 10.01 -39.69 -0.40 -1.91 16 18 C -0.24 -5.96 9.79 -38.83 -0.38 -6.34 16 19 C 0.11 2.86 5.28 -106.85 -0.56 2.30 16 20 C -0.52 -14.16 8.98 -37.74 -0.34 -14.50 16 21 H 0.08 1.98 7.96 -52.49 -0.42 1.57 16 22 C 0.03 0.84 4.92 -17.34 -0.09 0.76 16 23 N -0.77 -21.40 12.34 55.55 0.69 -20.71 16 24 Si 1.06 22.18 30.00 -169.99 -5.10 17.08 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 28 C -0.21 -5.68 6.57 -38.67 -0.25 -5.94 16 29 O -0.36 -4.09 11.04 -35.23 -0.39 -4.48 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.51 7.87 -51.93 -0.41 0.11 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.42 5.99 7.94 -40.82 -0.32 5.67 16 40 H 0.41 7.12 8.29 -40.82 -0.34 6.78 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 42 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 44 H 0.31 8.98 6.71 -40.82 -0.27 8.71 16 45 H 0.12 3.44 4.90 -52.48 -0.26 3.19 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -31.54 377.77 -8.94 -40.48 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -6.30 Total: 16.59 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.30 Total: -11.22 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.29 Total: -43.83 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.22 Total: -24.80 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.10 Total: 17.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.54 -8.94 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454109955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.871 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds