Wall clock time and date at job start Tue Mar 31 2020 17:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.33574 * 2 1 4 4 C 1.54488 * 110.36968 * 122.24617 * 2 1 3 5 5 C 1.54509 * 104.06140 * 142.92227 * 4 2 1 6 6 C 1.54474 * 104.06375 * 0.02562 * 5 4 2 7 7 H 1.08999 * 110.37299 * 94.96409 * 6 5 4 8 8 C 1.53010 * 110.37107 * 217.19067 * 6 5 4 9 9 N 1.46500 * 109.46808 * 184.99791 * 8 6 5 10 10 C 1.34773 * 119.99637 * 180.02562 * 9 8 6 11 11 O 1.21362 * 120.00447 * 0.02562 * 10 9 8 12 12 C 1.49357 * 120.00075 * 180.02562 * 10 9 8 13 13 O 1.21373 * 119.99890 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00075 * 180.02562 * 12 10 9 15 15 C 1.39749 * 120.00262 * 185.13984 * 14 12 10 16 16 C 1.39342 * 119.95353 * 213.18486 * 15 14 12 17 17 C 1.38471 * 120.41953 * 179.97438 * 16 15 14 18 18 C 1.37695 * 120.33314 * 0.02562 * 17 16 15 19 19 C 1.40752 * 119.89279 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.20516 * 179.97438 * 19 18 17 21 21 H 1.07993 * 119.99768 * 334.28798 * 20 19 18 22 22 C 1.39930 * 119.99755 * 154.29639 * 20 19 18 23 23 N 1.30831 * 119.99692 * 334.13147 * 22 20 19 24 24 Si 1.86802 * 119.99939 * 154.14163 * 22 20 19 25 25 H 1.48505 * 109.46862 * 179.97438 * 24 22 20 26 26 H 1.48502 * 109.46910 * 299.99126 * 24 22 20 27 27 H 1.48499 * 109.47084 * 59.99308 * 24 22 20 28 28 C 1.38300 * 119.95139 * 33.41686 * 15 14 12 29 29 O 1.44418 * 110.46882 * 237.68072 * 2 1 3 30 30 H 1.08999 * 109.47664 * 297.75335 * 1 2 3 31 31 H 1.09007 * 109.46722 * 57.75152 * 1 2 3 32 32 H 1.09001 * 109.47303 * 177.75313 * 1 2 3 33 33 H 1.08996 * 110.50944 * 24.27420 * 4 2 1 34 34 H 1.08998 * 110.50694 * 261.56728 * 4 2 1 35 35 H 1.08999 * 110.50707 * 241.35847 * 5 4 2 36 36 H 1.08999 * 110.51205 * 118.64964 * 5 4 2 37 37 H 1.09000 * 109.46736 * 65.00063 * 8 6 5 38 38 H 1.08995 * 109.46798 * 305.00039 * 8 6 5 39 39 H 0.96996 * 120.00574 * 359.97438 * 9 8 6 40 40 H 0.97006 * 120.00624 * 5.14019 * 14 12 10 41 41 H 1.07996 * 119.79227 * 359.95953 * 16 15 14 42 42 H 1.08005 * 119.83292 * 179.97438 * 17 16 15 43 43 H 1.08000 * 120.05325 * 179.97438 * 18 17 16 44 44 H 0.96996 * 120.00417 * 354.27458 * 23 22 20 45 45 H 1.08005 * 120.16237 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0677 -0.7727 1.2249 5 6 3.3193 -1.5027 0.6884 6 6 3.3902 -1.0841 -0.7969 7 1 4.0558 -0.2297 -0.9190 8 6 3.8656 -2.2559 -1.6584 9 7 4.0399 -1.8058 -3.0416 10 6 4.4552 -2.6737 -3.9853 11 8 4.6843 -3.8282 -3.6894 12 6 4.6335 -2.2148 -5.3954 13 8 4.4040 -1.0603 -5.6915 14 7 5.0483 -3.0829 -6.3392 15 6 5.3184 -2.6311 -7.6338 16 6 5.0712 -3.4606 -8.7258 17 6 5.3348 -3.0226 -10.0127 18 6 5.8450 -1.7619 -10.2274 19 6 6.0999 -0.9127 -9.1342 20 6 6.6243 0.3831 -9.3471 21 1 7.2068 0.5912 -10.2324 22 6 6.3887 1.3957 -8.4105 23 7 5.3306 1.3434 -7.6428 24 14 7.5849 2.8223 -8.2565 25 1 7.1116 3.7532 -7.2007 26 1 8.9288 2.3045 -7.8944 27 1 7.6647 3.5434 -9.5522 28 6 5.8353 -1.3633 -7.8289 29 8 2.0350 -0.7234 -1.1434 30 1 -0.3634 0.4785 0.9094 31 1 -0.3633 0.5484 -0.8692 32 1 -0.3634 -1.0269 -0.0403 33 1 1.3282 -1.4915 1.5777 34 1 2.3409 -0.0818 2.0224 35 1 3.1986 -2.5824 0.7760 36 1 4.2114 -1.1728 1.2208 37 1 3.1242 -3.0543 -1.6268 38 1 4.8158 -2.6269 -1.2744 39 1 3.8558 -0.8834 -3.2784 40 1 5.1594 -4.0213 -6.1200 41 1 4.6717 -4.4514 -8.5675 42 1 5.1400 -3.6736 -10.8523 43 1 6.0493 -1.4251 -11.2330 44 1 4.6669 0.6492 -7.7784 45 1 6.0312 -0.7210 -6.9830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454109955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:05 Heat of formation + Delta-G solvation = -125.847050 kcal Electronic energy + Delta-G solvation = -27925.730428 eV Core-core repulsion = 23906.556946 eV Total energy + Delta-G solvation = -4019.173482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -42.04027 -40.77346 -40.08967 -38.94560 -36.74664 -36.02738 -35.05868 -33.24831 -32.79852 -31.25461 -30.58145 -29.24472 -27.09340 -26.22846 -24.42843 -23.13292 -22.61827 -22.50331 -21.94345 -21.13571 -20.23042 -19.38295 -18.17589 -17.62999 -17.29734 -17.20251 -16.84874 -16.71125 -16.57861 -15.99919 -15.77554 -15.56821 -15.25624 -14.95048 -14.71676 -14.64935 -14.09602 -13.97691 -13.75687 -13.74516 -13.34270 -13.14827 -12.96174 -12.92174 -12.77950 -12.62166 -12.35861 -12.25001 -11.99455 -11.94616 -11.78517 -11.53965 -11.47596 -11.26725 -10.78655 -10.76272 -10.65880 -10.44405 -9.52876 -9.26450 -8.84835 -6.43160 0.08533 0.90193 0.95776 1.24069 1.49742 1.63063 1.79322 2.07101 2.35902 2.51533 2.72261 2.77925 3.31548 3.48741 3.56102 3.67348 3.93110 3.99954 4.09856 4.31583 4.35169 4.40623 4.46277 4.52459 4.55353 4.68677 4.72651 4.82519 4.90916 4.94882 4.98450 5.02112 5.03773 5.05828 5.12662 5.18906 5.25560 5.47273 5.56793 5.80875 5.83797 5.89129 5.90621 5.93272 6.24536 6.31485 6.33779 6.64781 6.77745 6.93972 6.99340 8.11747 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.002930 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.786183 B = 9555.102803 C =11050.036510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 H 0.072 0.928 4 C -0.144 4.144 5 C -0.142 4.142 6 C 0.060 3.940 7 H 0.083 0.917 8 C 0.124 3.876 9 N -0.686 5.686 10 C 0.522 3.478 11 O -0.536 6.536 12 C 0.486 3.514 13 O -0.511 6.511 14 N -0.632 5.632 15 C 0.158 3.842 16 C -0.264 4.264 17 C -0.064 4.064 18 C -0.255 4.255 19 C 0.075 3.925 20 C -0.559 4.559 21 H 0.074 0.926 22 C -0.004 4.004 23 N -0.798 5.798 24 Si 1.116 2.884 25 H -0.273 1.273 26 H -0.266 1.266 27 H -0.256 1.256 28 C -0.236 4.236 29 O -0.394 6.394 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.417 0.583 40 H 0.424 0.576 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.287 0.713 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 -3.749 19.690 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 H 0.090 0.910 4 C -0.182 4.182 5 C -0.180 4.180 6 C 0.002 3.998 7 H 0.101 0.899 8 C 0.002 3.998 9 N -0.338 5.338 10 C 0.302 3.698 11 O -0.414 6.414 12 C 0.268 3.732 13 O -0.385 6.385 14 N -0.279 5.279 15 C 0.065 3.935 16 C -0.285 4.285 17 C -0.082 4.082 18 C -0.275 4.275 19 C 0.072 3.928 20 C -0.587 4.587 21 H 0.092 0.908 22 C -0.222 4.222 23 N -0.419 5.419 24 Si 0.933 3.067 25 H -0.198 1.198 26 H -0.191 1.191 27 H -0.180 1.180 28 C -0.258 4.258 29 O -0.315 6.315 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.254 0.746 40 H 0.263 0.737 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.022 -2.434 20.485 21.231 hybrid contribution -0.442 -1.353 -1.134 1.820 sum -5.463 -3.788 19.351 20.461 Atomic orbital electron populations 1.21820 0.92692 1.02744 1.03047 1.23227 0.95974 0.95756 0.85028 0.91002 1.22999 0.97337 1.00024 0.97820 1.22915 0.99996 1.02438 0.92614 1.23331 0.85043 0.96380 0.95074 0.89929 1.21801 1.02656 0.97023 0.78328 1.45762 1.64733 1.14367 1.08986 1.19655 0.78607 0.85826 0.85709 1.90720 1.50700 1.17919 1.82085 1.20655 0.78988 0.86180 0.87403 1.90926 1.47359 1.18472 1.81782 1.43033 1.63891 1.12753 1.08247 1.17668 0.98036 0.94632 0.83211 1.20475 1.15507 1.01316 0.91229 1.20793 0.96271 0.94889 0.96277 1.21192 1.11945 0.97146 0.97188 1.17915 0.89431 0.94014 0.91434 1.20733 1.32707 0.95841 1.09378 0.90807 1.28444 0.98868 1.04203 0.90703 1.70492 1.06321 1.31762 1.33351 0.83037 0.73496 0.71854 0.78320 1.19778 1.19061 1.17983 1.21053 1.10954 0.96690 0.97061 1.89212 1.27056 1.75088 1.40097 0.88957 0.93011 0.92234 0.89861 0.88561 0.89537 0.88129 0.90335 0.87973 0.74632 0.73710 0.85160 0.84682 0.88139 0.90060 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.52 71.98 0.69 -1.36 16 2 C 0.06 0.89 3.92 31.10 0.12 1.01 16 3 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.14 -1.49 6.63 31.61 0.21 -1.28 16 5 C -0.14 -1.56 6.63 31.61 0.21 -1.35 16 6 C 0.06 1.03 3.32 31.10 0.10 1.13 16 7 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 8 C 0.12 2.57 5.28 86.38 0.46 3.02 16 9 N -0.69 -19.21 5.55 -464.50 -2.58 -21.79 16 10 C 0.52 17.56 7.89 87.24 0.69 18.25 16 11 O -0.54 -18.46 16.48 -3.28 -0.05 -18.51 16 12 C 0.49 19.84 7.62 87.24 0.66 20.50 16 13 O -0.51 -24.75 14.12 -3.32 -0.05 -24.80 16 14 N -0.63 -25.20 5.32 -304.98 -1.62 -26.83 16 15 C 0.16 7.40 6.27 38.16 0.24 7.64 16 16 C -0.26 -11.17 9.97 22.59 0.23 -10.95 16 17 C -0.06 -2.73 10.01 22.20 0.22 -2.51 16 18 C -0.25 -12.70 9.79 22.76 0.22 -12.47 16 19 C 0.08 4.23 5.28 -21.31 -0.11 4.11 16 20 C -0.56 -31.56 8.98 23.46 0.21 -31.35 16 21 H 0.07 4.02 7.96 -2.91 -0.02 4.00 16 22 C 0.00 -0.21 4.92 85.25 0.42 0.20 16 23 N -0.80 -46.29 12.34 21.82 0.27 -46.02 16 24 Si 1.12 45.55 30.00 68.60 2.06 47.61 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 27 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 28 C -0.24 -12.94 6.57 22.86 0.15 -12.79 16 29 O -0.39 -8.75 11.04 -148.98 -1.64 -10.39 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.79 7.87 -2.39 -0.02 0.77 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.42 12.18 7.94 -92.71 -0.74 11.44 16 40 H 0.42 14.15 8.29 -92.70 -0.77 13.38 16 41 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 42 H 0.14 4.65 8.06 -2.91 -0.02 4.62 16 43 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.29 17.76 6.71 -92.71 -0.62 17.14 16 45 H 0.10 5.84 4.90 -2.91 -0.01 5.82 16 Total: -1.00 -71.23 377.77 0.77 -70.46 By element: Atomic # 1 Polarization: 48.75 SS G_CDS: -0.33 Total: 48.43 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.72 Total: -18.17 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -3.93 Total: -94.63 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -1.75 Total: -53.70 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.06 Total: 47.61 kcal Total: -71.23 0.77 -70.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454109955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.383 kcal (2) G-P(sol) polarization free energy of solvation -71.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds