Wall clock time and date at job start Tue Mar 31 2020 17:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.82074 * 2 1 4 4 C 1.54383 * 109.82790 * 239.11280 * 2 1 3 5 5 C 1.55298 * 102.25025 * 219.03646 * 4 2 1 6 6 C 1.54941 * 100.94443 * 34.13841 * 5 4 2 7 7 H 1.09000 * 110.31302 * 82.56445 * 6 5 4 8 8 C 1.52998 * 110.31125 * 204.63674 * 6 5 4 9 9 N 1.46500 * 109.47345 * 184.99583 * 8 6 5 10 10 C 1.34777 * 120.00023 * 180.02562 * 9 8 6 11 11 O 1.21361 * 120.00108 * 359.97438 * 10 9 8 12 12 C 1.49357 * 119.99964 * 180.02562 * 10 9 8 13 13 O 1.21378 * 119.99859 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99964 * 180.02562 * 12 10 9 15 15 C 1.39739 * 119.99852 * 184.03447 * 14 12 10 16 16 C 1.39340 * 119.95371 * 322.73077 * 15 14 12 17 17 C 1.38468 * 120.42154 * 180.27457 * 16 15 14 18 18 C 1.37698 * 120.33120 * 359.44533 * 17 16 15 19 19 C 1.40751 * 119.89142 * 0.52692 * 18 17 16 20 20 C 1.41419 * 120.20422 * 179.72582 * 19 18 17 21 21 H 1.08002 * 119.99450 * 159.17781 * 20 19 18 22 22 C 1.39926 * 120.00052 * 339.17825 * 20 19 18 23 23 N 1.30833 * 119.99771 * 327.70208 * 22 20 19 24 24 Si 1.86803 * 120.00065 * 147.71039 * 22 20 19 25 25 H 1.48500 * 109.47233 * 84.98801 * 24 22 20 26 26 H 1.48494 * 109.47300 * 204.99293 * 24 22 20 27 27 H 1.48508 * 109.46565 * 324.99092 * 24 22 20 28 28 C 1.38308 * 119.95297 * 142.70400 * 15 14 12 29 29 O 1.43233 * 109.90711 * 120.93520 * 2 1 3 30 30 H 1.09003 * 109.47025 * 180.89049 * 1 2 3 31 31 H 1.09005 * 109.47203 * 300.88286 * 1 2 3 32 32 H 1.08998 * 109.47585 * 60.88332 * 1 2 3 33 33 H 1.09006 * 110.84579 * 100.84746 * 4 2 1 34 34 H 1.08993 * 110.85091 * 337.23305 * 4 2 1 35 35 H 1.09002 * 111.12938 * 276.21287 * 5 4 2 36 36 H 1.09010 * 111.15784 * 152.07235 * 5 4 2 37 37 H 1.08999 * 109.47153 * 64.99652 * 8 6 5 38 38 H 1.09004 * 109.47131 * 305.00025 * 8 6 5 39 39 H 0.97002 * 119.99995 * 0.02562 * 9 8 6 40 40 H 0.97003 * 119.99859 * 4.03617 * 14 12 10 41 41 H 1.07995 * 119.78964 * 0.02562 * 16 15 14 42 42 H 1.07996 * 119.84035 * 179.70269 * 17 16 15 43 43 H 1.07997 * 120.05644 * 180.27633 * 18 17 16 44 44 H 0.96998 * 119.99441 * 180.02562 * 23 22 20 45 45 H 1.08006 * 120.16302 * 0.02688 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2744 -1.5197 -0.6785 6 6 2.7777 -1.8431 0.7530 7 1 2.1456 -2.7310 0.7426 8 6 3.9665 -2.0496 1.6937 9 7 3.4804 -2.4704 3.0100 10 6 4.3557 -2.7120 4.0060 11 8 5.5466 -2.5815 3.8123 12 6 3.8601 -3.1416 5.3479 13 8 2.6690 -3.2725 5.5415 14 7 4.7353 -3.3827 6.3440 15 6 4.2790 -3.8653 7.5734 16 6 3.0676 -3.4127 8.0923 17 6 2.6089 -3.8802 9.3123 18 6 3.3401 -4.8069 10.0213 19 6 4.5654 -5.2738 9.5097 20 6 5.3245 -6.2212 10.2351 21 1 6.0627 -6.8244 9.7274 22 6 5.1192 -6.3770 11.6104 23 7 4.7689 -5.3491 12.3401 24 14 5.3457 -8.0525 12.4047 25 1 6.7785 -8.2518 12.7400 26 1 4.5321 -8.1265 13.6447 27 1 4.9063 -9.1112 11.4605 28 6 5.0301 -4.7921 8.2733 29 8 2.0178 -0.6923 1.1552 30 1 -0.3633 -1.0276 0.0160 31 1 -0.3634 0.5275 0.8820 32 1 -0.3634 0.5000 -0.8978 33 1 2.3656 -0.0409 -2.0173 34 1 1.3018 -1.4347 -1.6306 35 1 4.1627 -0.8885 -0.6530 36 1 3.4600 -2.4321 -1.2455 37 1 4.5187 -1.1150 1.7920 38 1 4.6231 -2.8183 1.2860 39 1 2.5285 -2.5751 3.1648 40 1 5.6820 -3.2212 6.2075 41 1 2.4846 -2.6896 7.5413 42 1 1.6710 -3.5193 9.7079 43 1 2.9760 -5.1718 10.9703 44 1 4.6270 -5.4570 13.2935 45 1 5.9692 -5.1438 7.8722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454109957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:22 Heat of formation + Delta-G solvation = -101.212695 kcal Electronic energy + Delta-G solvation = -27123.326117 eV Core-core repulsion = 23105.220860 eV Total energy + Delta-G solvation = -4018.105256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.65360 -40.02229 -38.63770 -37.11901 -35.42964 -34.40786 -33.12963 -32.73730 -32.07380 -29.90209 -28.83121 -28.23326 -25.38566 -25.07141 -23.46735 -22.11871 -21.25510 -21.05297 -20.84661 -19.78800 -18.39464 -17.67188 -17.43696 -16.58269 -16.25259 -15.70587 -15.47864 -15.47237 -14.94996 -14.74571 -14.66363 -14.17154 -14.00033 -13.90053 -13.38264 -13.28652 -12.99775 -12.90771 -12.50753 -12.38397 -12.29256 -12.21171 -11.75543 -11.68745 -11.56234 -11.34713 -11.32348 -11.23830 -11.10479 -10.71697 -10.54926 -10.12336 -9.94582 -9.79226 -9.43788 -9.35422 -9.13214 -8.87115 -7.55353 -7.03768 -6.92044 -4.34691 1.55005 2.46867 2.79100 2.89240 3.06161 3.08408 3.24516 3.25162 3.55730 3.87733 3.92312 3.96616 4.25479 4.29459 4.51516 4.63834 4.66806 4.72379 4.86999 4.92156 5.06403 5.14956 5.22281 5.26006 5.39602 5.46241 5.60468 5.63948 5.70823 5.81852 6.09475 6.25253 6.50772 6.63998 6.64815 6.86253 6.90525 6.97890 7.12431 7.16326 7.49173 7.58282 7.78828 7.94947 7.99526 8.06393 8.23537 8.40497 8.59784 8.83916 8.92998 10.04757 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.001906 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.833481 B =14690.379920 C =15193.285804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.074 3.926 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.148 4.148 6 C 0.067 3.933 7 H 0.081 0.919 8 C 0.121 3.879 9 N -0.699 5.699 10 C 0.511 3.489 11 O -0.525 6.525 12 C 0.498 3.502 13 O -0.505 6.505 14 N -0.632 5.632 15 C 0.149 3.851 16 C -0.232 4.232 17 C -0.089 4.089 18 C -0.178 4.178 19 C 0.125 3.875 20 C -0.471 4.471 21 H 0.081 0.919 22 C 0.089 3.911 23 N -0.770 5.770 24 Si 0.897 3.103 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.258 1.258 28 C -0.244 4.244 29 O -0.369 6.369 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.416 0.584 40 H 0.412 0.588 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.283 0.717 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 7.631 -23.155 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.098 0.902 4 C -0.189 4.189 5 C -0.186 4.186 6 C 0.009 3.991 7 H 0.099 0.901 8 C -0.003 4.003 9 N -0.353 5.353 10 C 0.292 3.708 11 O -0.401 6.401 12 C 0.279 3.721 13 O -0.380 6.380 14 N -0.277 5.277 15 C 0.058 3.942 16 C -0.253 4.253 17 C -0.108 4.108 18 C -0.198 4.198 19 C 0.122 3.878 20 C -0.499 4.499 21 H 0.099 0.901 22 C -0.133 4.133 23 N -0.393 5.393 24 Si 0.720 3.280 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.182 1.182 28 C -0.266 4.266 29 O -0.289 6.289 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.253 0.747 40 H 0.248 0.752 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.094 0.906 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.524 7.798 -22.741 24.463 hybrid contribution 0.152 -0.677 0.219 0.728 sum -4.372 7.121 -22.523 24.023 Atomic orbital electron populations 1.22150 0.94742 1.02750 1.02445 1.22743 0.94490 0.96389 0.84676 0.90182 1.23198 0.97697 0.99824 0.98138 1.23233 0.98932 1.01676 0.94773 1.23233 0.92248 0.90297 0.93294 0.90126 1.21624 0.95509 1.01414 0.81707 1.45642 1.11395 1.67579 1.10671 1.20305 0.86329 0.78253 0.85876 1.90745 1.15640 1.50734 1.82941 1.19940 0.86910 0.80101 0.85183 1.90775 1.15282 1.49643 1.82294 1.43155 1.11086 1.62062 1.11371 1.17457 0.96265 0.96752 0.83695 1.20321 0.98590 1.07973 0.98376 1.20528 0.98230 0.97719 0.94332 1.21160 0.95803 1.01948 1.00846 1.17296 0.90934 0.89572 0.90028 1.19447 1.19595 1.18421 0.92419 0.90082 1.25910 0.92146 0.97616 0.97600 1.69931 1.31065 1.30675 1.07611 0.86522 0.79224 0.83448 0.78783 1.19313 1.20052 1.18228 1.20662 1.01588 1.03722 1.00598 1.88527 1.70307 1.39973 1.30099 0.92099 0.91715 0.91548 0.89810 0.90197 0.89717 0.89357 0.90169 0.89606 0.74677 0.75155 0.87786 0.88921 0.87438 0.90568 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.44 37.16 0.35 -0.67 16 2 C 0.07 0.52 4.15 -26.00 -0.11 0.41 16 3 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.15 -0.73 6.54 -24.79 -0.16 -0.89 16 5 C -0.15 -0.77 6.57 -24.49 -0.16 -0.93 16 6 C 0.07 0.51 3.47 -25.71 -0.09 0.42 16 7 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 8 C 0.12 1.15 5.38 -4.04 -0.02 1.13 16 9 N -0.70 -8.64 5.55 -60.76 -0.34 -8.97 16 10 C 0.51 7.95 7.89 -11.63 -0.09 7.86 16 11 O -0.52 -8.86 16.48 5.49 0.09 -8.77 16 12 C 0.50 9.16 7.71 -11.63 -0.09 9.07 16 13 O -0.50 -10.33 14.05 5.47 0.08 -10.26 16 14 N -0.63 -12.26 5.31 -10.34 -0.05 -12.32 16 15 C 0.15 3.47 6.24 -83.82 -0.52 2.94 16 16 C -0.23 -5.55 8.69 -39.09 -0.34 -5.89 16 17 C -0.09 -2.16 10.01 -39.69 -0.40 -2.56 16 18 C -0.18 -4.65 8.80 -38.83 -0.34 -4.99 16 19 C 0.12 3.32 5.58 -106.85 -0.60 2.73 16 20 C -0.47 -12.37 8.96 -37.74 -0.34 -12.71 16 21 H 0.08 2.05 8.02 -52.49 -0.42 1.63 16 22 C 0.09 2.20 4.79 -17.35 -0.08 2.12 16 23 N -0.77 -19.57 11.70 55.55 0.65 -18.92 16 24 Si 0.90 18.26 29.66 -169.99 -5.04 13.21 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 28 C -0.24 -6.01 9.71 -38.67 -0.38 -6.38 16 29 O -0.37 -3.56 10.70 -35.23 -0.38 -3.94 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.34 7.85 -51.93 -0.41 -0.06 16 35 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.42 4.99 7.94 -40.82 -0.32 4.67 16 40 H 0.41 7.12 8.30 -40.82 -0.34 6.78 16 41 H 0.10 2.43 6.39 -52.49 -0.34 2.10 16 42 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.11 2.84 6.44 -52.49 -0.34 2.50 16 44 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 45 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -30.64 379.39 -9.01 -39.66 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.37 Total: 12.93 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.37 Total: -8.34 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.26 Total: -40.21 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.21 Total: -22.96 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.04 Total: 13.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.64 -9.01 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454109957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.557 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds