Wall clock time and date at job start Tue Mar 31 2020 17:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.82074 * 2 1 4 4 C 1.54383 * 109.82790 * 239.11280 * 2 1 3 5 5 C 1.55298 * 102.25025 * 219.03646 * 4 2 1 6 6 C 1.54941 * 100.94443 * 34.13841 * 5 4 2 7 7 H 1.09000 * 110.31302 * 82.56445 * 6 5 4 8 8 C 1.52998 * 110.31125 * 204.63674 * 6 5 4 9 9 N 1.46500 * 109.47345 * 184.99583 * 8 6 5 10 10 C 1.34777 * 120.00023 * 180.02562 * 9 8 6 11 11 O 1.21361 * 120.00108 * 359.97438 * 10 9 8 12 12 C 1.49357 * 119.99964 * 180.02562 * 10 9 8 13 13 O 1.21378 * 119.99859 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99964 * 180.02562 * 12 10 9 15 15 C 1.39739 * 119.99852 * 184.03447 * 14 12 10 16 16 C 1.39340 * 119.95371 * 322.73077 * 15 14 12 17 17 C 1.38468 * 120.42154 * 180.27457 * 16 15 14 18 18 C 1.37698 * 120.33120 * 359.44533 * 17 16 15 19 19 C 1.40751 * 119.89142 * 0.52692 * 18 17 16 20 20 C 1.41419 * 120.20422 * 179.72582 * 19 18 17 21 21 H 1.08002 * 119.99450 * 159.17781 * 20 19 18 22 22 C 1.39926 * 120.00052 * 339.17825 * 20 19 18 23 23 N 1.30833 * 119.99771 * 327.70208 * 22 20 19 24 24 Si 1.86803 * 120.00065 * 147.71039 * 22 20 19 25 25 H 1.48500 * 109.47233 * 84.98801 * 24 22 20 26 26 H 1.48494 * 109.47300 * 204.99293 * 24 22 20 27 27 H 1.48508 * 109.46565 * 324.99092 * 24 22 20 28 28 C 1.38308 * 119.95297 * 142.70400 * 15 14 12 29 29 O 1.43233 * 109.90711 * 120.93520 * 2 1 3 30 30 H 1.09003 * 109.47025 * 180.89049 * 1 2 3 31 31 H 1.09005 * 109.47203 * 300.88286 * 1 2 3 32 32 H 1.08998 * 109.47585 * 60.88332 * 1 2 3 33 33 H 1.09006 * 110.84579 * 100.84746 * 4 2 1 34 34 H 1.08993 * 110.85091 * 337.23305 * 4 2 1 35 35 H 1.09002 * 111.12938 * 276.21287 * 5 4 2 36 36 H 1.09010 * 111.15784 * 152.07235 * 5 4 2 37 37 H 1.08999 * 109.47153 * 64.99652 * 8 6 5 38 38 H 1.09004 * 109.47131 * 305.00025 * 8 6 5 39 39 H 0.97002 * 119.99995 * 0.02562 * 9 8 6 40 40 H 0.97003 * 119.99859 * 4.03617 * 14 12 10 41 41 H 1.07995 * 119.78964 * 0.02562 * 16 15 14 42 42 H 1.07996 * 119.84035 * 179.70269 * 17 16 15 43 43 H 1.07997 * 120.05644 * 180.27633 * 18 17 16 44 44 H 0.96998 * 119.99441 * 180.02562 * 23 22 20 45 45 H 1.08006 * 120.16302 * 0.02688 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2744 -1.5197 -0.6785 6 6 2.7777 -1.8431 0.7530 7 1 2.1456 -2.7310 0.7426 8 6 3.9665 -2.0496 1.6937 9 7 3.4804 -2.4704 3.0100 10 6 4.3557 -2.7120 4.0060 11 8 5.5466 -2.5815 3.8123 12 6 3.8601 -3.1416 5.3479 13 8 2.6690 -3.2725 5.5415 14 7 4.7353 -3.3827 6.3440 15 6 4.2790 -3.8653 7.5734 16 6 3.0676 -3.4127 8.0923 17 6 2.6089 -3.8802 9.3123 18 6 3.3401 -4.8069 10.0213 19 6 4.5654 -5.2738 9.5097 20 6 5.3245 -6.2212 10.2351 21 1 6.0627 -6.8244 9.7274 22 6 5.1192 -6.3770 11.6104 23 7 4.7689 -5.3491 12.3401 24 14 5.3457 -8.0525 12.4047 25 1 6.7785 -8.2518 12.7400 26 1 4.5321 -8.1265 13.6447 27 1 4.9063 -9.1112 11.4605 28 6 5.0301 -4.7921 8.2733 29 8 2.0178 -0.6923 1.1552 30 1 -0.3633 -1.0276 0.0160 31 1 -0.3634 0.5275 0.8820 32 1 -0.3634 0.5000 -0.8978 33 1 2.3656 -0.0409 -2.0173 34 1 1.3018 -1.4347 -1.6306 35 1 4.1627 -0.8885 -0.6530 36 1 3.4600 -2.4321 -1.2455 37 1 4.5187 -1.1150 1.7920 38 1 4.6231 -2.8183 1.2860 39 1 2.5285 -2.5751 3.1648 40 1 5.6820 -3.2212 6.2075 41 1 2.4846 -2.6896 7.5413 42 1 1.6710 -3.5193 9.7079 43 1 2.9760 -5.1718 10.9703 44 1 4.6270 -5.4570 13.2935 45 1 5.9692 -5.1438 7.8722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454109957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:16 Heat of formation + Delta-G solvation = -121.313219 kcal Electronic energy + Delta-G solvation = -27124.197741 eV Core-core repulsion = 23105.220860 eV Total energy + Delta-G solvation = -4018.976880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.99649 -40.76846 -40.02688 -38.87543 -36.68192 -35.93585 -34.91253 -33.25352 -32.74761 -31.83757 -30.42715 -29.18456 -27.22457 -26.22633 -24.46143 -22.95277 -22.71579 -22.51250 -21.68172 -21.23855 -19.82798 -19.35691 -18.12375 -17.84514 -17.36352 -17.14929 -16.87452 -16.66634 -16.53445 -16.37415 -15.59158 -15.42330 -15.14495 -14.89665 -14.66119 -14.40449 -14.14742 -14.04480 -13.96122 -13.55289 -13.37622 -13.16934 -12.94945 -12.85842 -12.83052 -12.65846 -12.50838 -12.29806 -12.15977 -11.88987 -11.72673 -11.70031 -11.63801 -11.20027 -10.80924 -10.62915 -10.53594 -10.39796 -9.50819 -8.90531 -8.78935 -6.33176 0.12556 0.95089 0.98407 1.28885 1.39321 1.48791 1.59350 2.08341 2.20040 2.53842 2.63723 2.77546 3.34592 3.48368 3.67652 3.70189 3.87613 4.08647 4.14970 4.35129 4.39153 4.44642 4.47500 4.57462 4.64520 4.76267 4.85505 4.87775 4.92728 4.97456 5.01747 5.04800 5.05033 5.10861 5.13585 5.25014 5.25951 5.35774 5.62409 5.72317 5.90667 6.00942 6.06800 6.09912 6.21416 6.41504 6.60562 6.67579 6.85270 6.89428 7.00952 8.21020 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.001906 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.833481 B =14690.379920 C =15193.285804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.064 3.936 3 H 0.080 0.920 4 C -0.144 4.144 5 C -0.143 4.143 6 C 0.066 3.934 7 H 0.087 0.913 8 C 0.118 3.882 9 N -0.683 5.683 10 C 0.520 3.480 11 O -0.538 6.538 12 C 0.499 3.501 13 O -0.526 6.526 14 N -0.631 5.631 15 C 0.159 3.841 16 C -0.243 4.243 17 C -0.089 4.089 18 C -0.204 4.204 19 C 0.099 3.901 20 C -0.503 4.503 21 H 0.081 0.919 22 C 0.051 3.949 23 N -0.799 5.799 24 Si 0.973 3.027 25 H -0.258 1.258 26 H -0.264 1.264 27 H -0.260 1.260 28 C -0.259 4.259 29 O -0.398 6.398 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.419 0.581 40 H 0.423 0.577 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.294 0.706 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 7.280 -24.924 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 H 0.098 0.902 4 C -0.181 4.181 5 C -0.181 4.181 6 C 0.009 3.991 7 H 0.104 0.896 8 C -0.004 4.004 9 N -0.336 5.336 10 C 0.300 3.700 11 O -0.416 6.416 12 C 0.281 3.719 13 O -0.402 6.402 14 N -0.277 5.277 15 C 0.066 3.934 16 C -0.264 4.264 17 C -0.107 4.107 18 C -0.223 4.223 19 C 0.096 3.904 20 C -0.531 4.531 21 H 0.099 0.901 22 C -0.169 4.169 23 N -0.422 5.422 24 Si 0.793 3.207 25 H -0.182 1.182 26 H -0.189 1.189 27 H -0.184 1.184 28 C -0.281 4.281 29 O -0.319 6.319 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.256 0.744 40 H 0.261 0.739 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.458 7.478 -24.559 26.056 hybrid contribution 0.089 -0.458 0.688 0.831 sum -4.369 7.020 -23.871 25.262 Atomic orbital electron populations 1.22142 0.94521 1.02541 1.02678 1.22933 0.94762 0.96550 0.85027 0.90189 1.23190 0.97552 0.99983 0.97404 1.23251 0.99102 1.02630 0.93077 1.23306 0.91553 0.90140 0.94125 0.89553 1.21890 0.96688 1.01504 0.80363 1.45707 1.11122 1.65755 1.11010 1.19678 0.86367 0.78834 0.85140 1.90748 1.16033 1.51963 1.82868 1.20491 0.86418 0.78974 0.86056 1.90758 1.16231 1.50281 1.82892 1.43089 1.11920 1.62140 1.10553 1.17474 0.95617 0.95635 0.84656 1.20473 0.99132 1.08369 0.98450 1.20778 0.98804 0.96902 0.94254 1.21127 0.96480 1.03631 1.01091 1.17665 0.91492 0.90156 0.91108 1.19720 1.20493 1.19230 0.93618 0.90105 1.26766 0.91329 1.01256 0.97562 1.69940 1.31081 1.32725 1.08463 0.85364 0.79695 0.77811 0.77796 1.18196 1.18856 1.18442 1.20801 1.02333 1.04373 1.00566 1.88497 1.70740 1.40729 1.31936 0.92424 0.93173 0.89702 0.88191 0.89429 0.89431 0.87540 0.90647 0.88166 0.74379 0.73941 0.87277 0.86747 0.88544 0.89511 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.44 71.98 0.68 -1.16 16 2 C 0.06 0.80 4.15 31.07 0.13 0.93 16 3 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.14 -1.01 6.54 31.85 0.21 -0.80 16 5 C -0.14 -1.10 6.57 32.05 0.21 -0.89 16 6 C 0.07 0.89 3.47 31.26 0.11 1.00 16 7 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 8 C 0.12 2.04 5.38 86.38 0.46 2.51 16 9 N -0.68 -16.07 5.55 -464.50 -2.58 -18.65 16 10 C 0.52 15.66 7.89 87.24 0.69 16.35 16 11 O -0.54 -17.58 16.48 -3.28 -0.05 -17.63 16 12 C 0.50 18.12 7.71 87.24 0.67 18.80 16 13 O -0.53 -21.35 14.05 -3.33 -0.05 -21.40 16 14 N -0.63 -24.38 5.31 -304.97 -1.62 -26.00 16 15 C 0.16 7.41 6.24 38.16 0.24 7.65 16 16 C -0.24 -11.72 8.69 22.59 0.20 -11.52 16 17 C -0.09 -4.34 10.01 22.20 0.22 -4.12 16 18 C -0.20 -10.91 8.80 22.76 0.20 -10.71 16 19 C 0.10 5.41 5.58 -21.31 -0.12 5.29 16 20 C -0.50 -26.97 8.96 23.46 0.21 -26.76 16 21 H 0.08 4.18 8.02 -2.91 -0.02 4.15 16 22 C 0.05 2.51 4.79 85.25 0.41 2.92 16 23 N -0.80 -41.01 11.70 21.82 0.26 -40.76 16 24 Si 0.97 37.25 29.66 68.60 2.03 39.29 16 25 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 26 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 27 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 28 C -0.26 -12.99 9.71 22.86 0.22 -12.77 16 29 O -0.40 -7.27 10.70 -148.98 -1.59 -8.87 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.09 0.50 7.85 -2.39 -0.02 0.48 16 35 H 0.09 0.65 8.06 -2.39 -0.02 0.63 16 36 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.42 9.64 7.94 -92.71 -0.74 8.90 16 40 H 0.42 14.47 8.30 -92.71 -0.77 13.70 16 41 H 0.11 5.10 6.39 -2.91 -0.02 5.08 16 42 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.10 5.26 6.44 -2.91 -0.02 5.24 16 44 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 45 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -66.34 379.39 0.66 -65.67 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.47 Total: 41.63 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.74 Total: -13.30 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -3.94 Total: -85.40 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -1.70 Total: -47.89 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.29 kcal Total: -66.34 0.66 -65.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454109957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.640 kcal (2) G-P(sol) polarization free energy of solvation -66.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds