Wall clock time and date at job start Tue Mar 31 2020 17:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.27191 * 2 1 4 4 C 1.54938 * 110.30629 * 122.09238 * 2 1 3 5 5 C 1.55306 * 100.94167 * 155.36370 * 4 2 1 6 6 C 1.54382 * 102.25155 * 325.86358 * 5 4 2 7 7 H 1.09003 * 109.83637 * 261.75454 * 6 5 4 8 8 C 1.52997 * 109.83250 * 140.87019 * 6 5 4 9 9 N 1.46503 * 109.47577 * 180.19075 * 8 6 5 10 10 C 1.34774 * 119.99922 * 180.02562 * 9 8 6 11 11 O 1.21356 * 120.00092 * 359.97438 * 10 9 8 12 12 C 1.49361 * 119.99502 * 179.97438 * 10 9 8 13 13 O 1.21370 * 120.00190 * 0.27355 * 12 10 9 14 14 N 1.34784 * 119.99606 * 179.97438 * 12 10 9 15 15 C 1.39737 * 119.99430 * 174.78848 * 14 12 10 16 16 C 1.39346 * 119.95054 * 146.84674 * 15 14 12 17 17 C 1.38471 * 120.42338 * 179.75598 * 16 15 14 18 18 C 1.37698 * 120.32756 * 0.51260 * 17 16 15 19 19 C 1.40747 * 119.89337 * 359.74727 * 18 17 16 20 20 C 1.41421 * 120.20701 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99866 * 156.16147 * 20 19 18 22 22 C 1.39932 * 119.99544 * 336.16113 * 20 19 18 23 23 N 1.30825 * 120.00151 * 340.60483 * 22 20 19 24 24 Si 1.86801 * 119.99597 * 160.60697 * 22 20 19 25 25 H 1.48503 * 109.47196 * 94.73089 * 24 22 20 26 26 H 1.48499 * 109.46872 * 214.72986 * 24 22 20 27 27 H 1.48493 * 109.47134 * 334.72875 * 24 22 20 28 28 C 1.38302 * 119.95548 * 327.11620 * 15 14 12 29 29 O 1.43242 * 107.66355 * 21.31310 * 6 5 4 30 30 H 1.08995 * 109.47433 * 297.90718 * 1 2 3 31 31 H 1.09007 * 109.47114 * 57.90926 * 1 2 3 32 32 H 1.08995 * 109.47021 * 177.90163 * 1 2 3 33 33 H 1.09002 * 111.12783 * 37.44582 * 4 2 1 34 34 H 1.08999 * 111.16116 * 273.29423 * 4 2 1 35 35 H 1.09001 * 110.84632 * 207.67945 * 5 4 2 36 36 H 1.09001 * 110.85049 * 84.05325 * 5 4 2 37 37 H 1.09000 * 109.47265 * 60.18606 * 8 6 5 38 38 H 1.09012 * 109.47399 * 300.19008 * 8 6 5 39 39 H 0.96995 * 119.99479 * 359.97438 * 9 8 6 40 40 H 0.96997 * 120.00048 * 354.78410 * 14 12 10 41 41 H 1.07996 * 119.78861 * 0.02562 * 16 15 14 42 42 H 1.07999 * 119.84073 * 180.23530 * 17 16 15 43 43 H 1.07997 * 120.05277 * 179.71922 * 18 17 16 44 44 H 0.97000 * 119.99669 * 180.02562 * 23 22 20 45 45 H 1.08000 * 120.16129 * 359.95721 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0677 -0.7720 1.2310 5 6 3.4699 -1.2018 0.7201 6 6 3.2113 -1.4426 -0.7828 7 1 3.0640 -2.5069 -0.9669 8 6 4.3991 -0.9339 -1.6019 9 7 4.1436 -1.1620 -3.0264 10 6 5.0595 -0.7914 -3.9430 11 8 6.0956 -0.2684 -3.5886 12 6 4.7992 -1.0245 -5.3952 13 8 3.7608 -1.5431 -5.7500 14 7 5.7149 -0.6535 -6.3120 15 6 5.5217 -0.9688 -7.6595 16 6 5.9797 -0.1016 -8.6495 17 6 5.7980 -0.4068 -9.9879 18 6 5.1528 -1.5665 -10.3552 19 6 4.6799 -2.4495 -9.3665 20 6 4.0159 -3.6421 -9.7363 21 1 3.9945 -4.4812 -9.0567 22 6 3.3867 -3.7348 -10.9827 23 7 3.0757 -2.6478 -11.6410 24 14 2.9907 -5.4107 -11.7066 25 1 1.5938 -5.7804 -11.3640 26 1 3.1415 -5.3603 -13.1830 27 1 3.9219 -6.4236 -11.1482 28 6 4.8713 -2.1383 -8.0088 29 8 2.0282 -0.7192 -1.1416 30 1 -0.3634 0.4810 0.9081 31 1 -0.3634 0.5460 -0.8707 32 1 -0.3633 -1.0269 -0.0376 33 1 1.4470 -1.6403 1.4521 34 1 2.1495 -0.1191 2.1000 35 1 3.7965 -2.1195 1.2093 36 1 4.1974 -0.4032 0.8654 37 1 5.3012 -1.4684 -1.3044 38 1 4.5335 0.1331 -1.4232 39 1 3.3156 -1.5803 -3.3096 40 1 6.5078 -0.1676 -6.0363 41 1 6.4835 0.8122 -8.3712 42 1 6.1601 0.2702 -10.7474 43 1 5.0095 -1.7979 -11.4004 44 1 2.6392 -2.7122 -12.5048 45 1 4.5126 -2.8094 -7.2424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454109960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:32 Heat of formation + Delta-G solvation = -99.676896 kcal Electronic energy + Delta-G solvation = -27419.635681 eV Core-core repulsion = 23401.597021 eV Total energy + Delta-G solvation = -4018.038659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -40.62592 -39.97100 -38.59269 -37.07436 -35.35115 -34.39403 -33.02671 -32.69732 -32.07440 -29.85028 -28.77693 -28.13478 -25.37656 -25.07622 -23.43275 -22.06973 -21.28097 -21.00801 -20.76728 -19.67456 -18.39077 -17.56015 -17.38658 -16.59476 -16.21580 -15.65975 -15.55301 -15.39625 -14.95261 -14.63375 -14.54694 -14.21550 -14.01601 -13.68644 -13.35369 -13.16688 -12.96141 -12.88427 -12.49482 -12.39503 -12.20190 -12.15405 -11.69537 -11.68260 -11.49599 -11.31833 -11.27816 -11.19099 -11.05823 -10.67080 -10.51924 -10.05435 -9.90329 -9.77498 -9.49234 -9.30136 -9.12731 -8.85114 -7.47550 -6.94741 -6.75253 -4.33358 1.59358 2.52969 2.77897 2.95880 3.09510 3.13630 3.22144 3.32824 3.62049 3.93120 3.97370 4.02597 4.24572 4.31359 4.62481 4.66852 4.72787 4.78039 4.90054 4.96552 5.10486 5.19698 5.25612 5.28880 5.41151 5.50597 5.65082 5.70521 5.76053 5.83590 6.13975 6.23538 6.39566 6.64717 6.67854 6.86772 7.01388 7.04055 7.15813 7.24967 7.48505 7.68420 7.85751 7.93965 8.06190 8.12957 8.20252 8.49364 8.66221 8.91655 8.96584 10.19886 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002356 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.474470 B =11881.186886 C =13018.813134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 H 0.071 0.929 4 C -0.151 4.151 5 C -0.147 4.147 6 C 0.067 3.933 7 H 0.091 0.909 8 C 0.110 3.890 9 N -0.696 5.696 10 C 0.512 3.488 11 O -0.529 6.529 12 C 0.495 3.505 13 O -0.494 6.494 14 N -0.635 5.635 15 C 0.147 3.853 16 C -0.259 4.259 17 C -0.090 4.090 18 C -0.173 4.173 19 C 0.119 3.881 20 C -0.457 4.457 21 H 0.078 0.922 22 C 0.077 3.923 23 N -0.789 5.789 24 Si 0.907 3.093 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.260 1.260 28 C -0.212 4.212 29 O -0.368 6.368 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.418 0.582 40 H 0.410 0.590 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.281 0.719 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 3.195 22.312 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 H 0.089 0.911 4 C -0.189 4.189 5 C -0.185 4.185 6 C 0.009 3.991 7 H 0.109 0.891 8 C -0.014 4.014 9 N -0.350 5.350 10 C 0.293 3.707 11 O -0.405 6.405 12 C 0.275 3.725 13 O -0.367 6.367 14 N -0.280 5.280 15 C 0.056 3.944 16 C -0.280 4.280 17 C -0.109 4.109 18 C -0.192 4.192 19 C 0.116 3.884 20 C -0.486 4.486 21 H 0.096 0.904 22 C -0.141 4.141 23 N -0.414 5.414 24 Si 0.731 3.269 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.184 1.184 28 C -0.233 4.233 29 O -0.288 6.288 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.255 0.745 40 H 0.246 0.754 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.137 0.863 44 H 0.091 0.909 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.440 3.266 21.938 22.226 hybrid contribution -0.143 -0.506 -0.139 0.544 sum -1.582 2.760 21.799 22.030 Atomic orbital electron populations 1.21886 0.93513 1.03039 1.02491 1.23027 0.95102 0.95607 0.84625 0.91102 1.23328 0.95941 1.01074 0.98536 1.23096 0.98211 1.03268 0.93971 1.23002 0.85270 0.96972 0.93852 0.89118 1.21889 0.97637 1.02161 0.79728 1.45610 1.22080 1.61365 1.05912 1.20318 0.83869 0.79091 0.87447 1.90724 1.25816 1.42128 1.81858 1.19953 0.84702 0.81344 0.86478 1.90838 1.24486 1.40614 1.80797 1.43135 1.23342 1.55185 1.06305 1.17456 1.01838 0.95263 0.79878 1.20045 1.14921 1.00485 0.92552 1.20460 0.99308 0.97159 0.93947 1.21345 1.01996 0.95991 0.99890 1.17474 0.88716 0.92273 0.89904 1.19549 1.29279 0.99493 1.00257 0.90355 1.25912 0.93514 0.98188 0.96526 1.69845 1.28829 1.29562 1.13151 0.86320 0.79503 0.82569 0.78475 1.19550 1.20026 1.18387 1.20941 1.09033 0.96854 0.96456 1.88569 1.41410 1.64576 1.34251 0.91281 0.91651 0.91777 0.90072 0.89746 0.89429 0.89883 0.89955 0.90670 0.74482 0.75411 0.89019 0.88853 0.86332 0.90850 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.62 37.16 0.36 -0.68 16 2 C 0.07 0.56 4.08 -25.71 -0.10 0.45 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.15 -0.81 6.57 -24.49 -0.16 -0.97 16 5 C -0.15 -0.81 6.54 -24.78 -0.16 -0.97 16 6 C 0.07 0.55 3.59 -26.01 -0.09 0.46 16 7 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 8 C 0.11 1.09 5.23 -4.04 -0.02 1.07 16 9 N -0.70 -9.16 5.46 -60.76 -0.33 -9.49 16 10 C 0.51 8.25 7.89 -11.63 -0.09 8.16 16 11 O -0.53 -9.04 16.48 5.49 0.09 -8.95 16 12 C 0.49 9.52 7.62 -11.62 -0.09 9.43 16 13 O -0.49 -10.96 14.13 5.48 0.08 -10.88 16 14 N -0.63 -12.39 5.32 -10.34 -0.06 -12.44 16 15 C 0.15 3.42 6.28 -83.82 -0.53 2.90 16 16 C -0.26 -5.83 9.97 -39.08 -0.39 -6.22 16 17 C -0.09 -2.11 10.02 -39.69 -0.40 -2.51 16 18 C -0.17 -4.53 8.70 -38.83 -0.34 -4.87 16 19 C 0.12 3.28 5.57 -106.85 -0.60 2.69 16 20 C -0.46 -12.46 9.05 -37.74 -0.34 -12.80 16 21 H 0.08 2.07 7.92 -52.49 -0.42 1.66 16 22 C 0.08 1.96 5.11 -17.35 -0.09 1.88 16 23 N -0.79 -20.70 11.01 55.55 0.61 -20.08 16 24 Si 0.91 18.93 29.60 -169.99 -5.03 13.90 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 28 C -0.21 -5.50 8.39 -38.67 -0.32 -5.83 16 29 O -0.37 -3.80 10.55 -35.23 -0.37 -4.17 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.42 5.53 7.87 -40.82 -0.32 5.21 16 40 H 0.41 6.89 8.29 -40.82 -0.34 6.55 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.12 3.18 6.16 -52.49 -0.32 2.85 16 44 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 45 H 0.11 2.83 6.38 -52.49 -0.33 2.49 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -31.64 378.31 -9.02 -40.66 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.34 Total: 13.58 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -3.37 Total: -7.81 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.22 Total: -42.02 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.20 Total: -24.00 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.64 -9.02 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454109960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.019 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds