Wall clock time and date at job start Tue Mar 31 2020 17:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34236 * 116.99975 * 2 1 4 4 O 1.20822 * 119.99704 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99927 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.63798 * 327.43110 * 5 3 2 7 7 C 1.55158 * 110.71625 * 204.29553 * 5 3 2 8 8 C 1.54912 * 101.57939 * 205.95343 * 7 5 3 9 9 N 1.47420 * 104.92870 * 36.95413 * 8 7 5 10 10 C 1.34777 * 125.65260 * 155.88979 * 9 8 7 11 11 O 1.21579 * 120.00351 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99318 * 0.02593 * 10 9 8 13 13 C 1.39957 * 119.99682 * 184.10597 * 12 10 9 14 14 C 1.39288 * 119.95007 * 322.41653 * 13 12 10 15 15 C 1.38487 * 120.42819 * 179.76406 * 14 13 12 16 16 C 1.37675 * 120.32545 * 0.51049 * 15 14 13 17 17 C 1.40749 * 119.88292 * 359.74580 * 16 15 14 18 18 C 1.41408 * 120.21209 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99613 * 159.03016 * 18 17 16 20 20 C 1.39930 * 119.99657 * 339.03090 * 18 17 16 21 21 N 1.30820 * 120.00243 * 328.06991 * 20 18 17 22 22 Si 1.86802 * 119.99895 * 148.07345 * 20 18 17 23 23 H 1.48501 * 109.46854 * 94.96672 * 22 20 18 24 24 H 1.48494 * 109.47425 * 214.96698 * 22 20 18 25 25 H 1.48504 * 109.46880 * 334.97206 * 22 20 18 26 26 C 1.38237 * 119.94582 * 142.68528 * 13 12 10 27 27 C 1.47187 * 108.61673 * 336.00821 * 9 8 7 28 28 H 1.08992 * 109.79514 * 241.52839 * 27 9 8 29 29 C 1.52999 * 109.94833 * 120.37582 * 27 9 8 30 30 H 1.09006 * 109.47079 * 299.99575 * 1 2 3 31 31 H 1.08999 * 109.47765 * 59.99270 * 1 2 3 32 32 H 1.08997 * 109.47272 * 180.02562 * 1 2 3 33 33 H 1.09000 * 111.00288 * 87.88488 * 7 5 3 34 34 H 1.08997 * 111.00697 * 324.02720 * 7 5 3 35 35 H 1.08999 * 110.36425 * 155.84983 * 8 7 5 36 36 H 1.09003 * 110.36913 * 278.06023 * 8 7 5 37 37 H 0.97000 * 120.00453 * 4.10944 * 12 10 9 38 38 H 1.08002 * 119.78295 * 359.97438 * 14 13 12 39 39 H 1.08007 * 119.83338 * 180.23481 * 15 14 13 40 40 H 1.07995 * 120.06343 * 179.76924 * 16 15 14 41 41 H 0.97007 * 120.00225 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.15929 * 359.96565 * 26 13 12 43 43 H 1.09005 * 109.47388 * 297.06711 * 29 27 9 44 44 H 1.08999 * 109.46978 * 57.06568 * 29 27 9 45 45 H 1.08996 * 109.47158 * 177.06984 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9952 0.4364 0.5482 7 6 4.0454 2.6244 0.5966 8 6 5.4244 2.7954 -0.0882 9 7 5.2381 2.2712 -1.4534 10 6 5.9733 2.6084 -2.5315 11 8 5.7289 2.1112 -3.6137 12 7 6.9796 3.4968 -2.4097 13 6 7.6874 3.9120 -3.5435 14 6 7.9704 3.0014 -4.5587 15 6 8.6659 3.4027 -5.6871 16 6 9.0945 4.7049 -5.8129 17 6 8.8205 5.6350 -4.7927 18 6 9.2580 6.9742 -4.9144 19 1 8.7830 7.7522 -4.3352 20 6 10.3063 7.2913 -5.7854 21 7 11.2630 6.4253 -6.0001 22 14 10.3397 8.9513 -6.6415 23 1 11.1757 9.8957 -5.8576 24 1 10.9129 8.7950 -8.0024 25 1 8.9568 9.4828 -6.7447 26 6 8.1093 5.2240 -3.6514 27 6 4.1140 1.3211 -1.4426 28 1 4.4638 0.3321 -1.7381 29 6 3.0193 1.7967 -2.3999 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 4.1526 2.5565 1.6792 34 1 3.3700 3.4348 0.3225 35 1 5.7037 3.8485 -0.1209 36 1 6.1841 2.2184 0.4393 37 1 7.2132 3.8483 -1.5364 38 1 7.6424 1.9764 -4.4669 39 1 8.8768 2.6894 -6.4702 40 1 9.6398 5.0124 -6.6929 41 1 11.9899 6.6452 -6.6036 42 1 7.8936 5.9299 -2.8630 43 1 2.6269 2.7539 -2.0565 44 1 3.4368 1.9130 -3.4001 45 1 2.2145 1.0621 -2.4252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455903531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:33 Heat of formation + Delta-G solvation = -102.934235 kcal Electronic energy + Delta-G solvation = -28193.955563 eV Core-core repulsion = 24175.775655 eV Total energy + Delta-G solvation = -4018.179908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.22451 -41.31323 -39.62468 -38.48663 -37.40340 -36.15761 -35.01746 -33.17255 -32.29197 -31.77070 -29.90857 -28.90621 -27.22358 -27.13504 -24.88329 -23.66599 -22.92406 -22.66088 -21.13366 -20.64678 -19.48914 -19.14708 -18.61064 -17.74205 -17.50667 -17.35452 -16.93901 -16.87114 -16.38725 -16.16781 -15.79591 -15.26264 -14.83238 -14.68014 -14.61242 -14.30612 -14.10129 -14.04970 -13.71338 -13.59140 -13.38746 -13.26075 -13.19670 -12.96765 -12.83076 -12.66724 -12.47637 -12.31095 -12.07564 -11.92583 -11.87134 -11.78784 -11.56642 -11.50487 -11.21434 -10.96949 -10.64161 -9.80087 -9.45544 -8.78046 -8.70727 -6.29755 0.92048 1.00629 1.02397 1.39044 1.39342 1.49459 1.59190 1.78847 2.13997 2.21093 2.68546 2.94585 3.27002 3.33294 3.70482 3.73274 3.96316 4.08723 4.18473 4.24356 4.30319 4.33701 4.38899 4.42276 4.58325 4.62956 4.72421 4.72911 4.81431 4.87015 4.97346 5.03792 5.07282 5.10633 5.13745 5.23536 5.27070 5.34929 5.37684 5.74276 5.81809 6.02939 6.06383 6.18416 6.35680 6.65970 6.66581 6.91503 6.92642 7.02626 7.53758 8.24013 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027538 B = 0.002259 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.545935 B =12389.768254 C =12650.146924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.480 3.520 4 O -0.527 6.527 5 C -0.086 4.086 6 H 0.155 0.845 7 C -0.109 4.109 8 C 0.090 3.910 9 N -0.631 5.631 10 C 0.718 3.282 11 O -0.608 6.608 12 N -0.670 5.670 13 C 0.187 3.813 14 C -0.245 4.245 15 C -0.091 4.091 16 C -0.210 4.210 17 C 0.100 3.900 18 C -0.504 4.504 19 H 0.080 0.920 20 C 0.050 3.950 21 N -0.801 5.801 22 Si 0.971 3.029 23 H -0.257 1.257 24 H -0.266 1.266 25 H -0.261 1.261 26 C -0.264 4.264 27 C 0.169 3.831 28 H 0.092 0.908 29 C -0.168 4.168 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.413 0.587 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.293 0.707 42 H 0.107 0.893 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 -10.423 16.415 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.323 3.677 4 O -0.416 6.416 5 C -0.105 4.105 6 H 0.173 0.827 7 C -0.147 4.147 8 C -0.032 4.032 9 N -0.369 5.369 10 C 0.420 3.580 11 O -0.487 6.487 12 N -0.318 5.318 13 C 0.093 3.907 14 C -0.266 4.266 15 C -0.110 4.110 16 C -0.230 4.230 17 C 0.097 3.903 18 C -0.532 4.532 19 H 0.098 0.902 20 C -0.169 4.169 21 N -0.425 5.425 22 Si 0.792 3.208 23 H -0.182 1.182 24 H -0.190 1.190 25 H -0.185 1.185 26 C -0.286 4.286 27 C 0.065 3.935 28 H 0.110 0.890 29 C -0.226 4.226 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.251 0.749 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.662 -10.554 15.514 23.812 hybrid contribution 0.038 0.914 -0.443 1.017 sum -14.624 -9.639 15.070 23.106 Atomic orbital electron populations 1.23561 0.74779 1.05756 1.02525 1.86517 1.24951 1.32610 1.83534 1.23401 0.91793 0.81345 0.71162 1.90679 1.67582 1.37250 1.46086 1.22195 0.87306 1.03951 0.97098 0.82719 1.22840 0.94976 0.94372 1.02472 1.22696 0.98915 1.01005 0.80564 1.47599 1.33847 1.47177 1.08327 1.15511 0.79413 0.79806 0.83239 1.90896 1.72579 1.58283 1.26988 1.42378 1.33821 1.45763 1.09868 1.17203 0.93749 0.92189 0.87526 1.20460 1.09745 0.98682 0.97696 1.20755 0.97498 0.95684 0.97067 1.21059 1.07718 0.94083 1.00112 1.17657 0.89370 0.93396 0.89873 1.19693 1.15940 0.93791 1.23748 0.90198 1.26743 0.92677 1.02709 0.94797 1.69942 1.06541 1.38718 1.27258 0.85374 0.79734 0.77477 0.78261 1.18157 1.18988 1.18487 1.20747 1.14144 0.93433 1.00314 1.21220 0.85542 0.93134 0.93573 0.89041 1.22238 0.98262 1.01493 1.00630 0.91493 0.92454 0.85069 0.85288 0.90615 0.89618 0.87805 0.74920 0.87867 0.87399 0.88878 0.89656 0.87492 0.92809 0.92927 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.59 10.57 -51.47 -0.54 -6.13 16 3 C 0.48 8.60 5.15 71.24 0.37 8.97 16 4 O -0.53 -12.48 14.69 21.98 0.32 -12.16 16 5 C -0.09 -1.21 3.37 -10.35 -0.03 -1.25 16 6 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 7 C -0.11 -1.37 6.39 31.99 0.20 -1.16 16 8 C 0.09 1.36 6.54 86.86 0.57 1.93 16 9 N -0.63 -15.93 3.09 -805.52 -2.49 -18.41 16 10 C 0.72 25.95 8.10 179.05 1.45 27.40 16 11 O -0.61 -27.33 12.80 -3.96 -0.05 -27.38 16 12 N -0.67 -24.39 5.28 -317.32 -1.67 -26.06 16 13 C 0.19 8.73 6.24 38.10 0.24 8.97 16 14 C -0.24 -12.17 8.68 22.58 0.20 -11.97 16 15 C -0.09 -4.64 10.01 22.20 0.22 -4.42 16 16 C -0.21 -11.53 8.79 22.75 0.20 -11.33 16 17 C 0.10 5.53 5.58 -21.30 -0.12 5.41 16 18 C -0.50 -27.24 8.96 23.46 0.21 -27.03 16 19 H 0.08 4.15 8.01 -2.91 -0.02 4.13 16 20 C 0.05 2.51 4.80 85.25 0.41 2.92 16 21 N -0.80 -41.63 11.68 21.82 0.25 -41.37 16 22 Si 0.97 37.76 29.66 68.60 2.03 39.80 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 24 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 C -0.26 -13.19 9.71 22.85 0.22 -12.97 16 27 C 0.17 3.70 3.43 45.31 0.16 3.86 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 C -0.17 -4.46 8.12 71.98 0.58 -3.88 16 30 H 0.07 0.69 8.13 -2.38 -0.02 0.67 16 31 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 32 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.32 7.23 -2.39 -0.02 1.31 16 35 H 0.09 1.27 7.36 -2.39 -0.02 1.25 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 11.77 7.35 -92.71 -0.68 11.09 16 38 H 0.10 5.13 6.41 -2.91 -0.02 5.11 16 39 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.09 5.23 6.44 -2.91 -0.02 5.21 16 41 H 0.29 13.57 8.30 -92.70 -0.77 12.80 16 42 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 43 H 0.05 1.53 7.37 -2.38 -0.02 1.51 16 44 H 0.05 1.76 6.63 -2.39 -0.02 1.75 16 45 H 0.07 1.64 7.31 -2.39 -0.02 1.62 16 Total: -1.00 -74.02 369.02 4.27 -69.75 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.34 Total: 35.02 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 6.07 Total: -13.05 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -3.91 Total: -85.85 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.27 Total: -45.67 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.80 kcal Total: -74.02 4.27 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455903531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.183 kcal (2) G-P(sol) polarization free energy of solvation -74.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds