Wall clock time and date at job start Tue Mar 31 2020 17:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 116.99823 * 2 1 4 4 O 1.20822 * 120.00350 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00046 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.29126 * 302.13767 * 5 3 2 7 7 C 1.54622 * 110.32410 * 64.37866 * 5 3 2 8 8 C 1.54947 * 102.83607 * 140.74216 * 7 5 3 9 9 N 1.48114 * 103.25459 * 322.62409 * 8 7 5 10 10 C 1.34776 * 127.02871 * 219.31636 * 9 8 7 11 11 O 1.21591 * 119.99784 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00580 * 359.96774 * 10 9 8 13 13 C 1.39957 * 120.00548 * 174.83354 * 12 10 9 14 14 C 1.39281 * 119.94818 * 145.60355 * 13 12 10 15 15 C 1.38493 * 120.43118 * 180.02562 * 14 13 12 16 16 C 1.37679 * 120.31613 * 359.97438 * 15 14 13 17 17 C 1.40743 * 119.88760 * 359.97438 * 16 15 14 18 18 C 1.41413 * 120.20940 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99735 * 25.24953 * 18 17 16 20 20 C 1.39924 * 119.99709 * 205.24857 * 18 17 16 21 21 N 1.30829 * 120.00240 * 16.72784 * 20 18 17 22 22 Si 1.86808 * 119.99726 * 196.72495 * 20 18 17 23 23 H 1.48491 * 109.47039 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46800 * 120.00217 * 22 20 18 25 25 H 1.48496 * 109.47001 * 240.00124 * 22 20 18 26 26 C 1.38241 * 119.94260 * 325.33443 * 13 12 10 27 27 C 1.47479 * 105.93372 * 39.29167 * 9 8 7 28 28 H 1.09001 * 110.07273 * 215.10117 * 27 9 8 29 29 C 1.52998 * 109.91502 * 93.91554 * 27 9 8 30 30 H 1.09004 * 109.47090 * 299.99824 * 1 2 3 31 31 H 1.08997 * 109.47581 * 60.00157 * 1 2 3 32 32 H 1.09004 * 109.47331 * 180.02562 * 1 2 3 33 33 H 1.09003 * 110.73903 * 259.07854 * 7 5 3 34 34 H 1.09000 * 110.74344 * 22.40494 * 7 5 3 35 35 H 1.09006 * 110.65974 * 81.06588 * 8 7 5 36 36 H 1.08997 * 110.65857 * 204.01479 * 8 7 5 37 37 H 0.97004 * 119.99534 * 354.84145 * 12 10 9 38 38 H 1.08003 * 119.78774 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.83644 * 179.97438 * 15 14 13 40 40 H 1.08008 * 120.05804 * 180.02562 * 16 15 14 41 41 H 0.97001 * 119.99692 * 179.97438 * 21 20 18 42 42 H 1.07990 * 120.16182 * 0.02562 * 26 13 12 43 43 H 1.09002 * 109.46679 * 302.38379 * 29 27 9 44 44 H 1.09005 * 109.47034 * 62.37713 * 29 27 9 45 45 H 1.08993 * 109.47326 * 182.38238 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9726 0.7515 0.8648 7 6 4.1349 0.6772 -1.3083 8 6 5.3026 1.6379 -1.6467 9 7 4.7766 2.9645 -1.2502 10 6 4.9493 4.1331 -1.8992 11 8 4.4566 5.1528 -1.4566 12 7 5.6681 4.1715 -3.0386 13 6 5.7575 5.3614 -3.7700 14 6 6.9327 5.6732 -4.4494 15 6 7.0323 6.8482 -5.1758 16 6 5.9693 7.7213 -5.2344 17 6 4.7751 7.4189 -4.5537 18 6 3.6793 8.3110 -4.6088 19 1 3.5728 8.9844 -5.4465 20 6 2.7330 8.3212 -3.5781 21 7 3.0129 7.7651 -2.4275 22 14 1.0699 9.1291 -3.8450 23 1 1.0027 9.6803 -5.2222 24 1 -0.0051 8.1208 -3.6629 25 1 0.8899 10.2277 -2.8623 26 6 4.6774 6.2226 -3.8213 27 6 4.0249 2.7451 -0.0005 28 1 3.1578 3.4045 0.0352 29 6 4.9295 3.0086 1.2049 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 4.5037 -0.3349 -1.1417 34 1 3.3832 0.6903 -2.0976 35 1 6.1890 1.3859 -1.0645 36 1 5.5246 1.6125 -2.7135 37 1 6.1234 3.3742 -3.3518 38 1 7.7720 4.9948 -4.4090 39 1 7.9482 7.0807 -5.6986 40 1 6.0514 8.6362 -5.8024 41 1 2.3570 7.7726 -1.7129 42 1 3.7645 5.9797 -3.2981 43 1 5.8036 2.3595 1.1520 44 1 5.2498 4.0505 1.1979 45 1 4.3798 2.8036 2.1234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455903536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:43 Heat of formation + Delta-G solvation = -76.951313 kcal Electronic energy + Delta-G solvation = -29028.138915 eV Core-core repulsion = 25011.085711 eV Total energy + Delta-G solvation = -4017.053204 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.06854 -39.82365 -38.16389 -36.80976 -36.40689 -34.15136 -33.10011 -31.88071 -31.21479 -29.42248 -28.52038 -27.71317 -26.54865 -25.14220 -23.24214 -22.59676 -21.32935 -20.75517 -19.92549 -18.96000 -18.33435 -17.65791 -17.18951 -16.89822 -16.33261 -15.98751 -15.41128 -14.85499 -14.60750 -14.39310 -14.20809 -14.03472 -13.63212 -13.33374 -13.01458 -12.93065 -12.86619 -12.68610 -12.47915 -12.30904 -12.17232 -11.95207 -11.62565 -11.48527 -11.22959 -11.09192 -11.01978 -10.97469 -10.93684 -10.65564 -10.45849 -10.43330 -9.92776 -9.61943 -9.25658 -8.91198 -8.88508 -8.42381 -7.25654 -6.80761 -6.44101 -4.18049 2.01537 2.37977 2.82175 2.96309 3.13382 3.20070 3.24658 3.32231 3.88929 4.08976 4.11858 4.24469 4.43307 4.58358 4.81741 4.87056 4.89720 4.95418 4.97222 5.05637 5.28383 5.34668 5.39626 5.44314 5.50054 5.65582 5.78754 5.83059 6.05401 6.16526 6.25738 6.28943 6.43260 6.53759 6.83028 7.05404 7.12249 7.25766 7.41585 7.52648 7.55743 7.84139 7.97902 8.04731 8.22352 8.45228 8.62845 8.77733 9.06974 9.12491 9.31681 10.40537 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003930 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.544052 B = 7123.461884 C = 8818.426676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.490 6.490 5 C -0.093 4.093 6 H 0.123 0.877 7 C -0.118 4.118 8 C 0.098 3.902 9 N -0.640 5.640 10 C 0.710 3.290 11 O -0.524 6.524 12 N -0.682 5.682 13 C 0.161 3.839 14 C -0.270 4.270 15 C -0.079 4.079 16 C -0.241 4.241 17 C 0.120 3.880 18 C -0.465 4.465 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.754 5.754 22 Si 0.899 3.101 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.158 4.158 27 C 0.156 3.844 28 H 0.110 0.890 29 C -0.157 4.157 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.389 0.611 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.280 0.720 42 H 0.136 0.864 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -19.601 6.647 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.376 6.376 5 C -0.112 4.112 6 H 0.141 0.859 7 C -0.156 4.156 8 C -0.025 4.025 9 N -0.381 5.381 10 C 0.412 3.588 11 O -0.394 6.394 12 N -0.329 5.329 13 C 0.068 3.932 14 C -0.292 4.292 15 C -0.098 4.098 16 C -0.261 4.261 17 C 0.117 3.883 18 C -0.495 4.495 19 H 0.095 0.905 20 C -0.149 4.149 21 N -0.377 5.377 22 Si 0.724 3.276 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.201 1.201 26 C -0.179 4.179 27 C 0.051 3.949 28 H 0.128 0.872 29 C -0.215 4.215 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.222 0.778 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.153 0.847 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.712 -18.441 7.198 19.809 hybrid contribution -0.679 -0.153 -0.108 0.705 sum -1.392 -18.594 7.090 19.949 Atomic orbital electron populations 1.23284 0.76235 1.03610 1.02815 1.86480 1.23479 1.33284 1.84334 1.23505 0.91826 0.81461 0.72576 1.90740 1.66719 1.36138 1.44007 1.22034 0.87786 0.99172 1.02253 0.85882 1.22678 0.98327 0.99386 0.95251 1.22453 0.96164 0.82887 1.01028 1.47964 1.57100 1.06302 1.26750 1.15533 0.80575 0.82218 0.80480 1.91179 1.51455 1.30197 1.66614 1.42554 1.53645 1.12905 1.23787 1.17376 0.94782 0.86236 0.94765 1.19949 0.96338 1.01184 1.11705 1.20255 0.97006 0.94113 0.98456 1.20951 0.94542 1.00386 1.10253 1.17484 0.91256 0.90719 0.88829 1.19537 1.06088 1.18175 1.05653 0.90522 1.25960 0.99625 0.94788 0.94550 1.69918 1.34204 1.31931 1.01644 0.86415 0.82329 0.79404 0.79482 1.18528 1.19931 1.20085 1.21388 0.97815 0.94357 1.04376 1.21292 0.96264 0.93153 0.84181 0.87228 1.22157 0.99460 1.03421 0.96511 0.91832 0.91760 0.88077 0.88725 0.90237 0.90769 0.90097 0.77758 0.89590 0.89268 0.89120 0.90832 0.84655 0.92413 0.91080 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.70 10.56 -39.26 -0.41 -4.12 16 3 C 0.46 5.78 7.12 36.01 0.26 6.04 16 4 O -0.49 -8.14 14.99 -18.75 -0.28 -8.42 16 5 C -0.09 -0.94 3.14 -90.40 -0.28 -1.22 16 6 H 0.12 0.86 7.69 -51.93 -0.40 0.46 16 7 C -0.12 -1.00 6.60 -24.85 -0.16 -1.16 16 8 C 0.10 0.98 6.89 -2.13 -0.01 0.97 16 9 N -0.64 -9.88 2.92 -167.96 -0.49 -10.37 16 10 C 0.71 14.88 8.27 -86.92 -0.72 14.16 16 11 O -0.52 -13.76 14.45 5.29 0.08 -13.68 16 12 N -0.68 -13.65 5.30 -14.27 -0.08 -13.72 16 13 C 0.16 3.92 6.25 -83.76 -0.52 3.40 16 14 C -0.27 -6.17 9.97 -39.10 -0.39 -6.56 16 15 C -0.08 -1.85 10.02 -39.69 -0.40 -2.25 16 16 C -0.24 -6.22 9.79 -38.84 -0.38 -6.60 16 17 C 0.12 3.42 5.57 -106.85 -0.59 2.82 16 18 C -0.47 -13.14 9.05 -37.74 -0.34 -13.49 16 19 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 20 C 0.07 1.95 5.16 -17.35 -0.09 1.86 16 21 N -0.75 -21.67 10.95 55.55 0.61 -21.07 16 22 Si 0.90 20.21 29.59 -169.99 -5.03 15.17 16 23 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.16 -4.42 7.28 -38.69 -0.28 -4.70 16 27 C 0.16 2.19 2.96 -66.87 -0.20 1.99 16 28 H 0.11 2.00 6.34 -51.93 -0.33 1.67 16 29 C -0.16 -1.88 9.30 37.16 0.35 -1.53 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.77 7.86 -51.93 -0.41 0.37 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.74 6.90 -51.93 -0.36 0.38 16 37 H 0.39 6.11 7.20 -40.82 -0.29 5.81 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 41 H 0.28 7.59 8.30 -40.82 -0.34 7.26 16 42 H 0.14 4.10 4.63 -52.49 -0.24 3.86 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -35.87 374.10 -8.91 -44.78 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.23 Total: 10.71 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.71 Total: -4.92 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.04 Total: -45.16 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.62 Total: -26.22 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.87 -8.91 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455903536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.175 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds