Wall clock time and date at job start Tue Mar 31 2020 17:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 116.99823 * 2 1 4 4 O 1.20822 * 120.00350 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00046 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.29126 * 302.13767 * 5 3 2 7 7 C 1.54622 * 110.32410 * 64.37866 * 5 3 2 8 8 C 1.54947 * 102.83607 * 140.74216 * 7 5 3 9 9 N 1.48114 * 103.25459 * 322.62409 * 8 7 5 10 10 C 1.34776 * 127.02871 * 219.31636 * 9 8 7 11 11 O 1.21591 * 119.99784 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00580 * 359.96774 * 10 9 8 13 13 C 1.39957 * 120.00548 * 174.83354 * 12 10 9 14 14 C 1.39281 * 119.94818 * 145.60355 * 13 12 10 15 15 C 1.38493 * 120.43118 * 180.02562 * 14 13 12 16 16 C 1.37679 * 120.31613 * 359.97438 * 15 14 13 17 17 C 1.40743 * 119.88760 * 359.97438 * 16 15 14 18 18 C 1.41413 * 120.20940 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99735 * 25.24953 * 18 17 16 20 20 C 1.39924 * 119.99709 * 205.24857 * 18 17 16 21 21 N 1.30829 * 120.00240 * 16.72784 * 20 18 17 22 22 Si 1.86808 * 119.99726 * 196.72495 * 20 18 17 23 23 H 1.48491 * 109.47039 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46800 * 120.00217 * 22 20 18 25 25 H 1.48496 * 109.47001 * 240.00124 * 22 20 18 26 26 C 1.38241 * 119.94260 * 325.33443 * 13 12 10 27 27 C 1.47479 * 105.93372 * 39.29167 * 9 8 7 28 28 H 1.09001 * 110.07273 * 215.10117 * 27 9 8 29 29 C 1.52998 * 109.91502 * 93.91554 * 27 9 8 30 30 H 1.09004 * 109.47090 * 299.99824 * 1 2 3 31 31 H 1.08997 * 109.47581 * 60.00157 * 1 2 3 32 32 H 1.09004 * 109.47331 * 180.02562 * 1 2 3 33 33 H 1.09003 * 110.73903 * 259.07854 * 7 5 3 34 34 H 1.09000 * 110.74344 * 22.40494 * 7 5 3 35 35 H 1.09006 * 110.65974 * 81.06588 * 8 7 5 36 36 H 1.08997 * 110.65857 * 204.01479 * 8 7 5 37 37 H 0.97004 * 119.99534 * 354.84145 * 12 10 9 38 38 H 1.08003 * 119.78774 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.83644 * 179.97438 * 15 14 13 40 40 H 1.08008 * 120.05804 * 180.02562 * 16 15 14 41 41 H 0.97001 * 119.99692 * 179.97438 * 21 20 18 42 42 H 1.07990 * 120.16182 * 0.02562 * 26 13 12 43 43 H 1.09002 * 109.46679 * 302.38379 * 29 27 9 44 44 H 1.09005 * 109.47034 * 62.37713 * 29 27 9 45 45 H 1.08993 * 109.47326 * 182.38238 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9726 0.7515 0.8648 7 6 4.1349 0.6772 -1.3083 8 6 5.3026 1.6379 -1.6467 9 7 4.7766 2.9645 -1.2502 10 6 4.9493 4.1331 -1.8992 11 8 4.4566 5.1528 -1.4566 12 7 5.6681 4.1715 -3.0386 13 6 5.7575 5.3614 -3.7700 14 6 6.9327 5.6732 -4.4494 15 6 7.0323 6.8482 -5.1758 16 6 5.9693 7.7213 -5.2344 17 6 4.7751 7.4189 -4.5537 18 6 3.6793 8.3110 -4.6088 19 1 3.5728 8.9844 -5.4465 20 6 2.7330 8.3212 -3.5781 21 7 3.0129 7.7651 -2.4275 22 14 1.0699 9.1291 -3.8450 23 1 1.0027 9.6803 -5.2222 24 1 -0.0051 8.1208 -3.6629 25 1 0.8899 10.2277 -2.8623 26 6 4.6774 6.2226 -3.8213 27 6 4.0249 2.7451 -0.0005 28 1 3.1578 3.4045 0.0352 29 6 4.9295 3.0086 1.2049 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 4.5037 -0.3349 -1.1417 34 1 3.3832 0.6903 -2.0976 35 1 6.1890 1.3859 -1.0645 36 1 5.5246 1.6125 -2.7135 37 1 6.1234 3.3742 -3.3518 38 1 7.7720 4.9948 -4.4090 39 1 7.9482 7.0807 -5.6986 40 1 6.0514 8.6362 -5.8024 41 1 2.3570 7.7726 -1.7129 42 1 3.7645 5.9797 -3.2981 43 1 5.8036 2.3595 1.1520 44 1 5.2498 4.0505 1.1979 45 1 4.3798 2.8036 2.1234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455903536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:42 Heat of formation + Delta-G solvation = -100.596323 kcal Electronic energy + Delta-G solvation = -29029.164240 eV Core-core repulsion = 25011.085711 eV Total energy + Delta-G solvation = -4018.078528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11399 -41.21792 -39.59129 -38.38799 -37.51174 -36.02728 -34.99163 -33.10208 -32.16643 -31.41181 -29.91358 -28.96528 -27.43039 -27.17740 -24.57501 -23.47421 -23.04682 -22.38500 -21.21396 -20.40483 -19.74864 -19.08137 -18.52378 -17.85130 -17.62257 -17.29829 -16.94919 -16.56470 -16.36377 -15.94552 -15.60207 -15.00358 -14.82458 -14.67996 -14.54187 -14.26168 -14.05987 -13.97587 -13.85720 -13.55834 -13.36611 -13.10706 -12.98577 -12.84827 -12.79629 -12.64086 -12.53983 -12.23870 -12.08462 -11.93843 -11.88371 -11.76143 -11.53585 -11.45943 -11.17191 -10.84190 -10.73721 -9.70958 -9.27547 -8.72730 -8.41972 -6.30454 0.92776 1.05461 1.12822 1.31069 1.41666 1.46986 1.48098 1.77641 2.18570 2.28299 2.82042 3.04841 3.26380 3.44879 3.69500 3.79992 4.10077 4.19610 4.21467 4.26224 4.28537 4.40503 4.51693 4.52811 4.62214 4.65138 4.67701 4.73474 4.91729 4.96005 4.98560 5.05046 5.13872 5.23004 5.25188 5.28759 5.30099 5.39618 5.48229 5.84448 5.90402 6.03772 6.19699 6.25131 6.46278 6.62214 6.72922 6.98727 7.09031 7.10369 7.73760 8.37933 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003930 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.544052 B = 7123.461884 C = 8818.426676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.464 3.536 4 O -0.545 6.545 5 C -0.081 4.081 6 H 0.171 0.829 7 C -0.107 4.107 8 C 0.090 3.910 9 N -0.638 5.638 10 C 0.701 3.299 11 O -0.589 6.589 12 N -0.669 5.669 13 C 0.161 3.839 14 C -0.256 4.256 15 C -0.077 4.077 16 C -0.257 4.257 17 C 0.085 3.915 18 C -0.503 4.503 19 H 0.077 0.923 20 C 0.026 3.974 21 N -0.796 5.796 22 Si 0.974 3.026 23 H -0.249 1.249 24 H -0.275 1.275 25 H -0.266 1.266 26 C -0.189 4.189 27 C 0.147 3.853 28 H 0.053 0.947 29 C -0.147 4.147 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.412 0.588 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.098 0.902 41 H 0.277 0.723 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.029 0.971 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 -23.309 6.522 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.308 3.692 4 O -0.435 6.435 5 C -0.101 4.101 6 H 0.188 0.812 7 C -0.145 4.145 8 C -0.031 4.031 9 N -0.377 5.377 10 C 0.403 3.597 11 O -0.465 6.465 12 N -0.319 5.319 13 C 0.067 3.933 14 C -0.277 4.277 15 C -0.095 4.095 16 C -0.277 4.277 17 C 0.082 3.918 18 C -0.533 4.533 19 H 0.095 0.905 20 C -0.191 4.191 21 N -0.420 5.420 22 Si 0.795 3.205 23 H -0.172 1.172 24 H -0.201 1.201 25 H -0.190 1.190 26 C -0.211 4.211 27 C 0.042 3.958 28 H 0.071 0.929 29 C -0.206 4.206 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.250 0.750 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.048 0.952 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.466 -22.265 7.062 23.404 hybrid contribution -1.228 0.820 -0.068 1.478 sum 0.238 -21.445 6.994 22.558 Atomic orbital electron populations 1.23552 0.75109 1.05898 1.02058 1.86476 1.24569 1.31818 1.83605 1.24061 0.92876 0.81209 0.71018 1.90744 1.68051 1.38037 1.46644 1.22102 0.86146 0.96493 1.05309 0.81188 1.22752 0.97088 1.01303 0.93380 1.22949 0.97921 0.79700 1.02534 1.47905 1.56439 1.06697 1.26668 1.15810 0.80113 0.83098 0.80673 1.91147 1.53710 1.33372 1.68246 1.42289 1.53788 1.12582 1.23221 1.17540 0.94338 0.87003 0.94403 1.20438 0.96446 1.01382 1.09458 1.20728 0.97620 0.93384 0.97808 1.21187 0.94669 1.01544 1.10340 1.17888 0.92612 0.91244 0.90045 1.19797 1.07775 1.19364 1.06365 0.90453 1.26841 1.03309 0.95139 0.93765 1.70077 1.35264 1.34124 1.02527 0.85292 0.76878 0.78337 0.80005 1.17168 1.20056 1.19044 1.21237 0.98304 0.95866 1.05709 1.21395 0.94860 0.95058 0.84492 0.92862 1.22081 1.00513 1.01611 0.96356 0.92165 0.93116 0.84166 0.83654 0.91967 0.86961 0.89050 0.74985 0.85213 0.84978 0.88361 0.91315 0.87968 0.88877 0.95164 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.35 -6.54 10.56 -51.43 -0.54 -7.09 16 3 C 0.46 11.33 7.12 71.24 0.51 11.83 16 4 O -0.55 -19.29 14.99 21.98 0.33 -18.96 16 5 C -0.08 -1.43 3.14 -10.65 -0.03 -1.47 16 6 H 0.17 1.46 7.69 -2.39 -0.02 1.45 16 7 C -0.11 -1.38 6.60 31.81 0.21 -1.17 16 8 C 0.09 1.46 6.89 86.73 0.60 2.06 16 9 N -0.64 -19.48 2.92 -803.56 -2.35 -21.82 16 10 C 0.70 30.47 8.27 179.06 1.48 31.95 16 11 O -0.59 -33.49 14.45 -4.00 -0.06 -33.55 16 12 N -0.67 -26.62 5.30 -317.32 -1.68 -28.30 16 13 C 0.16 7.91 6.25 38.09 0.24 8.15 16 14 C -0.26 -11.06 9.97 22.58 0.23 -10.84 16 15 C -0.08 -3.41 10.02 22.20 0.22 -3.19 16 16 C -0.26 -13.40 9.79 22.75 0.22 -13.18 16 17 C 0.09 5.06 5.57 -21.31 -0.12 4.94 16 18 C -0.50 -30.12 9.05 23.46 0.21 -29.91 16 19 H 0.08 4.40 7.90 -2.91 -0.02 4.38 16 20 C 0.03 1.49 5.16 85.25 0.44 1.93 16 21 N -0.80 -49.49 10.95 21.82 0.24 -49.25 16 22 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 23 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 C -0.19 -11.17 7.28 22.85 0.17 -11.01 16 27 C 0.15 4.14 2.96 45.14 0.13 4.27 16 28 H 0.05 2.14 6.34 -2.39 -0.02 2.12 16 29 C -0.15 -3.40 9.30 71.98 0.67 -2.73 16 30 H 0.06 0.97 8.13 -2.38 -0.02 0.95 16 31 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.14 1.02 8.14 -2.38 -0.02 1.01 16 33 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 1.05 7.86 -2.39 -0.02 1.03 16 35 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.09 1.31 6.90 -2.39 -0.02 1.29 16 37 H 0.41 11.98 7.20 -92.71 -0.67 11.31 16 38 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 40 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.28 16.36 8.30 -92.71 -0.77 15.59 16 42 H 0.10 6.73 4.63 -2.92 -0.01 6.71 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -90.42 374.10 4.69 -85.73 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.35 Total: 33.98 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 6.37 Total: -6.73 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -3.79 Total: -99.37 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -0.27 Total: -59.60 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -90.42 4.69 -85.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455903536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.869 kcal (2) G-P(sol) polarization free energy of solvation -90.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds