Wall clock time and date at job start Tue Mar 31 2020 17:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.45101 * 2 1 4 4 O 1.43005 * 109.44173 * 240.09332 * 2 1 3 5 5 C 1.35690 * 116.73661 * 286.34718 * 4 2 1 6 6 C 1.39413 * 119.55459 * 327.22087 * 5 4 2 7 7 C 1.38392 * 120.07420 * 179.87484 * 6 5 4 8 8 C 1.38586 * 120.15429 * 0.04705 * 7 6 5 9 9 C 1.37773 * 120.41836 * 359.70165 * 8 7 6 10 10 C 1.39773 * 120.71660 * 147.14400 * 5 4 2 11 11 C 1.47545 * 120.23692 * 0.08982 * 10 5 4 12 12 O 1.21590 * 119.99694 * 0.02562 * 11 10 5 13 13 N 1.34781 * 120.00278 * 180.02562 * 11 10 5 14 14 C 1.46497 * 119.99856 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46864 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46878 * 60.00353 * 15 14 13 17 17 C 1.52992 * 109.47648 * 300.00187 * 15 14 13 18 18 C 1.50698 * 109.47096 * 179.97438 * 15 14 13 19 19 H 1.07995 * 120.00035 * 354.24417 * 18 15 14 20 20 C 1.37884 * 119.99785 * 174.24237 * 18 15 14 21 21 N 1.31516 * 119.99661 * 209.34607 * 20 18 15 22 22 Si 1.86794 * 120.00298 * 29.34673 * 20 18 15 23 23 H 1.48504 * 109.47264 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47029 * 299.99919 * 22 20 18 25 25 H 1.48501 * 109.47147 * 60.00093 * 22 20 18 26 26 N 1.40257 * 119.21134 * 359.85917 * 6 5 4 27 27 C 1.35094 * 118.95891 * 15.51047 * 26 6 5 28 28 O 1.21294 * 120.14130 * 181.63951 * 27 26 6 29 29 H 1.09007 * 109.47004 * 300.06100 * 1 2 3 30 30 H 1.09000 * 109.47270 * 60.05986 * 1 2 3 31 31 H 1.08998 * 109.47519 * 180.02562 * 1 2 3 32 32 H 1.07993 * 119.92166 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.78862 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.95458 * 180.25939 * 9 8 7 35 35 H 0.97002 * 119.99775 * 359.97438 * 13 11 10 36 36 H 1.08998 * 109.47286 * 60.00519 * 14 13 11 37 37 H 1.08998 * 109.47562 * 299.99748 * 14 13 11 38 38 H 1.08997 * 109.47006 * 175.40509 * 16 15 14 39 39 H 1.09001 * 109.46744 * 295.40460 * 16 15 14 40 40 H 1.08998 * 109.47183 * 55.40375 * 16 15 14 41 41 H 1.09001 * 109.47027 * 305.31338 * 17 15 14 42 42 H 1.09008 * 109.47248 * 65.31014 * 17 15 14 43 43 H 1.09002 * 109.47584 * 185.30828 * 17 15 14 44 44 H 0.97005 * 119.99926 * 354.99231 * 21 20 18 45 45 H 0.97000 * 120.52100 * 195.53379 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 8 2.0060 -0.6724 -1.1689 5 6 1.8875 -2.0240 -1.1866 6 6 1.9968 -2.7394 0.0050 7 6 1.8751 -4.1180 -0.0002 8 6 1.6454 -4.7921 -1.1891 9 6 1.5301 -4.0980 -2.3735 10 6 1.6559 -2.7048 -2.3851 11 6 1.5387 -1.9588 -3.6527 12 8 1.6440 -0.7475 -3.6572 13 7 1.3148 -2.6201 -4.8056 14 6 1.1989 -1.8793 -6.0642 15 6 0.9484 -2.8598 -7.2117 16 6 -0.3484 -3.6289 -6.9514 17 6 2.1154 -3.8447 -7.3051 18 6 0.8286 -2.0979 -8.5064 19 1 0.8286 -1.0179 -8.4993 20 6 0.7190 -2.7795 -9.6999 21 7 1.1770 -2.2413 -10.8090 22 14 -0.0800 -4.4675 -9.7415 23 1 -0.0739 -4.9839 -11.1339 24 1 0.6794 -5.3963 -8.8663 25 1 -1.4801 -4.3645 -9.2574 26 7 2.2306 -2.0454 1.2012 27 6 2.0319 -0.7095 1.2318 28 8 2.2560 -0.0836 2.2463 29 1 -0.3633 0.5148 0.8895 30 1 -0.3634 0.5129 -0.8905 31 1 -0.3634 -1.0276 0.0005 32 1 1.9598 -4.6697 0.9243 33 1 1.5511 -5.8680 -1.1862 34 1 1.3469 -4.6305 -3.2950 35 1 1.2311 -3.5864 -4.8020 36 1 2.1229 -1.3318 -6.2499 37 1 0.3677 -1.1774 -5.9976 38 1 -0.5698 -4.2678 -7.8063 39 1 -0.2333 -4.2435 -6.0586 40 1 -1.1660 -2.9233 -6.8038 41 1 3.0507 -3.2922 -7.3961 42 1 2.1435 -4.4611 -6.4065 43 1 1.9836 -4.4825 -8.1792 44 1 1.5257 -1.3361 -10.8008 45 1 2.5306 -2.5171 1.9938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:38 Heat of formation + Delta-G solvation = -67.428802 kcal Electronic energy + Delta-G solvation = -28959.371894 eV Core-core repulsion = 24942.731617 eV Total energy + Delta-G solvation = -4016.640277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96725 -39.82245 -38.65925 -37.87825 -36.62941 -35.41003 -33.39569 -32.26352 -31.64722 -30.69220 -29.40155 -26.41321 -26.20164 -25.20037 -24.63559 -23.77800 -23.62185 -20.63034 -19.88810 -19.42239 -19.04543 -18.25114 -17.09468 -16.77902 -16.50668 -16.34091 -15.74941 -15.47124 -15.32606 -14.94676 -14.76076 -14.62591 -14.50631 -13.77461 -13.57338 -13.23409 -13.02405 -12.83571 -12.70552 -12.66327 -12.48371 -12.32921 -12.07307 -11.99780 -11.83163 -11.49175 -11.36369 -11.11735 -10.64379 -10.36228 -10.20744 -10.10279 -9.95214 -9.59784 -9.09631 -9.07192 -8.91877 -8.50100 -8.33349 -8.06266 -6.57972 -4.10063 0.47346 0.72813 1.87801 2.33278 2.84148 2.98033 3.29490 3.35382 3.38595 3.58663 3.65145 3.69063 4.24444 4.41165 4.43443 4.48721 4.60680 4.74323 4.83921 4.88819 5.12723 5.20372 5.27316 5.29566 5.52851 5.66502 5.70330 5.80580 5.96125 6.03229 6.04719 6.08251 6.21745 6.35145 6.37819 6.48673 6.52764 6.63969 6.69437 6.76541 6.95029 6.98439 7.24451 7.36461 7.45764 7.89100 8.11811 8.32493 8.56020 8.86093 9.54690 10.82389 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.002856 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.999916 B = 9801.096269 C =10511.532657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.153 0.847 4 O -0.263 6.263 5 C 0.137 3.863 6 C 0.078 3.922 7 C -0.103 4.103 8 C -0.118 4.118 9 C -0.078 4.078 10 C -0.120 4.120 11 C 0.548 3.452 12 O -0.521 6.521 13 N -0.717 5.717 14 C 0.144 3.856 15 C 0.036 3.964 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.610 4.610 19 H 0.059 0.941 20 C 0.040 3.960 21 N -0.889 5.889 22 Si 1.058 2.942 23 H -0.300 1.300 24 H -0.276 1.276 25 H -0.287 1.287 26 N -0.658 5.658 27 C 0.497 3.503 28 O -0.512 6.512 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.395 0.605 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.026 0.974 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.020 0.980 43 H 0.056 0.944 44 H 0.271 0.729 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -6.402 23.424 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 H 0.170 0.830 4 O -0.176 6.176 5 C 0.088 3.912 6 C -0.017 4.017 7 C -0.124 4.124 8 C -0.137 4.137 9 C -0.097 4.097 10 C -0.124 4.124 11 C 0.333 3.667 12 O -0.398 6.398 13 N -0.369 5.369 14 C 0.022 3.978 15 C 0.034 3.966 16 C -0.206 4.206 17 C -0.199 4.199 18 C -0.648 4.648 19 H 0.077 0.923 20 C -0.168 4.168 21 N -0.520 5.520 22 Si 0.891 3.109 23 H -0.228 1.228 24 H -0.204 1.204 25 H -0.215 1.215 26 N -0.305 5.305 27 C 0.284 3.716 28 O -0.386 6.386 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.759 -6.103 22.676 23.495 hybrid contribution 0.378 0.412 1.612 1.706 sum -0.381 -5.690 24.288 24.949 Atomic orbital electron populations 1.22335 0.92129 1.03907 1.04904 1.22979 0.96931 0.97914 0.80649 0.82969 1.86577 1.77276 1.15031 1.38698 1.18526 0.98005 0.83352 0.91341 1.17930 1.06167 0.92558 0.85076 1.20758 1.01003 0.90928 0.99676 1.20890 1.01062 1.00537 0.91203 1.21304 0.97348 0.91874 0.99219 1.19665 1.06227 0.93690 0.92856 1.17878 0.78255 0.87369 0.83189 1.90819 1.49405 1.13159 1.86452 1.46250 1.72050 1.10938 1.07625 1.21551 1.01088 0.94687 0.80478 1.18641 0.91128 0.92673 0.94158 1.22365 1.00393 0.99538 0.98294 1.22235 0.99713 0.98844 0.99117 1.21607 1.58568 0.94156 0.90435 0.92252 1.25713 0.93686 1.05007 0.92373 1.70872 1.33917 1.15981 1.31278 0.84058 0.76624 0.76011 0.74185 1.22775 1.20396 1.21497 1.43691 1.66285 1.08142 1.12401 1.21615 0.77044 0.82015 0.90951 1.90799 1.49247 1.65040 1.33488 0.90011 0.89017 0.91719 0.84613 0.84320 0.84325 0.76967 0.92035 0.92179 0.93917 0.95534 0.93040 0.93494 0.96110 0.92488 0.91833 0.74500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.30 37.16 0.35 -1.28 16 2 C 0.07 0.82 3.81 -27.86 -0.11 0.71 16 3 H 0.15 1.45 8.14 -51.93 -0.42 1.03 16 4 O -0.26 -3.70 8.29 -40.47 -0.34 -4.04 16 5 C 0.14 1.73 5.85 -38.57 -0.23 1.51 16 6 C 0.08 0.76 6.54 -83.51 -0.55 0.21 16 7 C -0.10 -0.73 9.94 -39.40 -0.39 -1.12 16 8 C -0.12 -0.84 10.02 -39.62 -0.40 -1.24 16 9 C -0.08 -0.74 9.54 -39.13 -0.37 -1.11 16 10 C -0.12 -1.56 5.88 -104.91 -0.62 -2.18 16 11 C 0.55 9.13 7.77 -12.46 -0.10 9.04 16 12 O -0.52 -10.59 15.20 -16.41 -0.25 -10.84 16 13 N -0.72 -11.64 4.97 -61.35 -0.30 -11.94 16 14 C 0.14 2.89 4.51 -4.04 -0.02 2.87 16 15 C 0.04 0.76 0.50 -155.66 -0.08 0.69 16 16 C -0.15 -2.91 7.74 37.16 0.29 -2.62 16 17 C -0.14 -2.86 7.90 37.15 0.29 -2.57 16 18 C -0.61 -16.18 8.42 -34.44 -0.29 -16.47 16 19 H 0.06 1.72 7.99 -52.49 -0.42 1.30 16 20 C 0.04 1.09 5.06 -17.82 -0.09 1.00 16 21 N -0.89 -26.24 13.70 55.43 0.76 -25.48 16 22 Si 1.06 24.36 23.53 -169.99 -4.00 20.36 16 23 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.28 -5.74 5.73 56.52 0.32 -5.42 16 25 H -0.29 -6.25 6.69 56.52 0.38 -5.88 16 26 N -0.66 -5.96 5.48 -9.67 -0.05 -6.01 16 27 C 0.50 5.55 7.19 -10.81 -0.08 5.47 16 28 O -0.51 -6.94 17.95 5.55 0.10 -6.84 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.61 7.81 -51.93 -0.41 0.20 16 32 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.14 1.09 6.41 -52.49 -0.34 0.75 16 35 H 0.39 5.38 4.27 -40.82 -0.17 5.21 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.04 0.88 2.27 -51.93 -0.12 0.76 16 39 H 0.03 0.41 7.00 -51.93 -0.36 0.05 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.33 7.02 -51.92 -0.36 -0.03 16 43 H 0.06 1.22 4.40 -51.93 -0.23 0.99 16 44 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 45 H 0.42 2.75 8.89 -40.82 -0.36 2.38 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -33.43 356.49 -6.92 -40.35 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.83 Total: 6.15 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.38 Total: -7.09 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.40 Total: -43.44 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.49 Total: -21.71 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -4.00 Total: 20.36 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.43 -6.92 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.074 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds