Wall clock time and date at job start Tue Mar 31 2020 17:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.45101 * 2 1 4 4 O 1.43005 * 109.44173 * 240.09332 * 2 1 3 5 5 C 1.35690 * 116.73661 * 286.34718 * 4 2 1 6 6 C 1.39413 * 119.55459 * 327.22087 * 5 4 2 7 7 C 1.38392 * 120.07420 * 179.87484 * 6 5 4 8 8 C 1.38586 * 120.15429 * 0.04705 * 7 6 5 9 9 C 1.37773 * 120.41836 * 359.70165 * 8 7 6 10 10 C 1.39773 * 120.71660 * 147.14400 * 5 4 2 11 11 C 1.47545 * 120.23692 * 0.08982 * 10 5 4 12 12 O 1.21590 * 119.99694 * 0.02562 * 11 10 5 13 13 N 1.34781 * 120.00278 * 180.02562 * 11 10 5 14 14 C 1.46497 * 119.99856 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46864 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46878 * 60.00353 * 15 14 13 17 17 C 1.52992 * 109.47648 * 300.00187 * 15 14 13 18 18 C 1.50698 * 109.47096 * 179.97438 * 15 14 13 19 19 H 1.07995 * 120.00035 * 354.24417 * 18 15 14 20 20 C 1.37884 * 119.99785 * 174.24237 * 18 15 14 21 21 N 1.31516 * 119.99661 * 209.34607 * 20 18 15 22 22 Si 1.86794 * 120.00298 * 29.34673 * 20 18 15 23 23 H 1.48504 * 109.47264 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47029 * 299.99919 * 22 20 18 25 25 H 1.48501 * 109.47147 * 60.00093 * 22 20 18 26 26 N 1.40257 * 119.21134 * 359.85917 * 6 5 4 27 27 C 1.35094 * 118.95891 * 15.51047 * 26 6 5 28 28 O 1.21294 * 120.14130 * 181.63951 * 27 26 6 29 29 H 1.09007 * 109.47004 * 300.06100 * 1 2 3 30 30 H 1.09000 * 109.47270 * 60.05986 * 1 2 3 31 31 H 1.08998 * 109.47519 * 180.02562 * 1 2 3 32 32 H 1.07993 * 119.92166 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.78862 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.95458 * 180.25939 * 9 8 7 35 35 H 0.97002 * 119.99775 * 359.97438 * 13 11 10 36 36 H 1.08998 * 109.47286 * 60.00519 * 14 13 11 37 37 H 1.08998 * 109.47562 * 299.99748 * 14 13 11 38 38 H 1.08997 * 109.47006 * 175.40509 * 16 15 14 39 39 H 1.09001 * 109.46744 * 295.40460 * 16 15 14 40 40 H 1.08998 * 109.47183 * 55.40375 * 16 15 14 41 41 H 1.09001 * 109.47027 * 305.31338 * 17 15 14 42 42 H 1.09008 * 109.47248 * 65.31014 * 17 15 14 43 43 H 1.09002 * 109.47584 * 185.30828 * 17 15 14 44 44 H 0.97005 * 119.99926 * 354.99231 * 21 20 18 45 45 H 0.97000 * 120.52100 * 195.53379 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 8 2.0060 -0.6724 -1.1689 5 6 1.8875 -2.0240 -1.1866 6 6 1.9968 -2.7394 0.0050 7 6 1.8751 -4.1180 -0.0002 8 6 1.6454 -4.7921 -1.1891 9 6 1.5301 -4.0980 -2.3735 10 6 1.6559 -2.7048 -2.3851 11 6 1.5387 -1.9588 -3.6527 12 8 1.6440 -0.7475 -3.6572 13 7 1.3148 -2.6201 -4.8056 14 6 1.1989 -1.8793 -6.0642 15 6 0.9484 -2.8598 -7.2117 16 6 -0.3484 -3.6289 -6.9514 17 6 2.1154 -3.8447 -7.3051 18 6 0.8286 -2.0979 -8.5064 19 1 0.8286 -1.0179 -8.4993 20 6 0.7190 -2.7795 -9.6999 21 7 1.1770 -2.2413 -10.8090 22 14 -0.0800 -4.4675 -9.7415 23 1 -0.0739 -4.9839 -11.1339 24 1 0.6794 -5.3963 -8.8663 25 1 -1.4801 -4.3645 -9.2574 26 7 2.2306 -2.0454 1.2012 27 6 2.0319 -0.7095 1.2318 28 8 2.2560 -0.0836 2.2463 29 1 -0.3633 0.5148 0.8895 30 1 -0.3634 0.5129 -0.8905 31 1 -0.3634 -1.0276 0.0005 32 1 1.9598 -4.6697 0.9243 33 1 1.5511 -5.8680 -1.1862 34 1 1.3469 -4.6305 -3.2950 35 1 1.2311 -3.5864 -4.8020 36 1 2.1229 -1.3318 -6.2499 37 1 0.3677 -1.1774 -5.9976 38 1 -0.5698 -4.2678 -7.8063 39 1 -0.2333 -4.2435 -6.0586 40 1 -1.1660 -2.9233 -6.8038 41 1 3.0507 -3.2922 -7.3961 42 1 2.1435 -4.4611 -6.4065 43 1 1.9836 -4.4825 -8.1792 44 1 1.5257 -1.3361 -10.8008 45 1 2.5306 -2.5171 1.9938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:37 Heat of formation + Delta-G solvation = -92.292223 kcal Electronic energy + Delta-G solvation = -28960.450053 eV Core-core repulsion = 24942.731617 eV Total energy + Delta-G solvation = -4017.718436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.79068 -40.97662 -39.73544 -38.69281 -38.25648 -36.24227 -35.05635 -33.44115 -33.05540 -31.63607 -30.14969 -27.97650 -27.67919 -26.51323 -25.99893 -24.78325 -24.53781 -21.81167 -21.08016 -20.54619 -20.17106 -19.34933 -18.66654 -17.87476 -17.51630 -17.27706 -16.73726 -16.50577 -16.41528 -16.32963 -16.05612 -15.62673 -15.40156 -15.16105 -14.83067 -14.41892 -14.32783 -14.12568 -13.98265 -13.94647 -13.58237 -13.55859 -13.24687 -13.11040 -12.94799 -12.71209 -12.42169 -12.26995 -11.99044 -11.94170 -11.83814 -11.65583 -11.26958 -10.98772 -10.87920 -10.62753 -10.17092 -10.09477 -9.72995 -9.08596 -8.77478 -6.29349 -0.30526 -0.02307 1.07112 1.46527 1.55979 1.57868 1.78322 1.88776 2.15518 2.19951 2.50968 2.73296 2.80892 3.04577 3.46933 3.64888 3.75349 3.84406 3.94448 4.12838 4.21211 4.23480 4.32512 4.44796 4.47429 4.52117 4.56985 4.81813 4.85225 4.87133 4.91160 4.93684 4.96552 5.04035 5.10680 5.18703 5.31574 5.37657 5.44918 5.56634 5.59724 5.63594 5.82274 6.04327 6.16291 6.19309 6.60064 6.61288 6.64957 7.29477 7.45198 8.61532 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.002856 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.999916 B = 9801.096269 C =10511.532657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.067 3.933 3 H 0.155 0.845 4 O -0.296 6.296 5 C 0.112 3.888 6 C 0.068 3.932 7 C -0.079 4.079 8 C -0.104 4.104 9 C -0.071 4.071 10 C -0.148 4.148 11 C 0.546 3.454 12 O -0.571 6.571 13 N -0.704 5.704 14 C 0.161 3.839 15 C 0.033 3.967 16 C -0.149 4.149 17 C -0.140 4.140 18 C -0.616 4.616 19 H 0.010 0.990 20 C -0.011 4.011 21 N -0.927 5.927 22 Si 1.093 2.907 23 H -0.314 1.314 24 H -0.228 1.228 25 H -0.264 1.264 26 N -0.645 5.645 27 C 0.500 3.500 28 O -0.541 6.541 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.177 0.823 33 H 0.182 0.818 34 H 0.159 0.841 35 H 0.411 0.589 36 H 0.030 0.970 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.252 0.748 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -11.586 26.718 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 H 0.172 0.828 4 O -0.209 6.209 5 C 0.063 3.937 6 C -0.027 4.027 7 C -0.099 4.099 8 C -0.122 4.122 9 C -0.091 4.091 10 C -0.152 4.152 11 C 0.334 3.666 12 O -0.451 6.451 13 N -0.357 5.357 14 C 0.037 3.963 15 C 0.032 3.968 16 C -0.205 4.205 17 C -0.197 4.197 18 C -0.654 4.654 19 H 0.029 0.971 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.919 3.081 23 H -0.243 1.243 24 H -0.153 1.153 25 H -0.191 1.191 26 N -0.293 5.293 27 C 0.287 3.713 28 O -0.418 6.418 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.194 0.806 33 H 0.200 0.800 34 H 0.177 0.823 35 H 0.250 0.750 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.495 -11.340 26.017 28.420 hybrid contribution 0.655 2.096 0.647 2.290 sum -0.840 -9.244 26.664 28.234 Atomic orbital electron populations 1.22261 0.91045 1.03970 1.05129 1.23115 0.97882 0.97999 0.80193 0.82768 1.86528 1.77950 1.16463 1.40004 1.18836 0.99211 0.82997 0.92610 1.18036 1.07037 0.93552 0.84036 1.21305 0.97441 0.89555 1.01597 1.21381 0.98603 1.02413 0.89779 1.21601 0.96076 0.90067 1.01319 1.19420 1.09986 0.95127 0.90699 1.18527 0.76650 0.87067 0.84349 1.90793 1.51450 1.15587 1.87267 1.45913 1.72232 1.11429 1.06148 1.21022 0.98672 0.94329 0.82289 1.18581 0.93548 0.93005 0.91682 1.22280 0.98156 0.99649 1.00442 1.22157 0.97843 0.98571 1.01137 1.21877 1.57547 0.92409 0.93569 0.97134 1.27221 0.93205 1.08891 0.91737 1.71023 1.36890 1.15460 1.32731 0.83697 0.77424 0.72431 0.74564 1.24288 1.15302 1.19089 1.43527 1.65456 1.07436 1.12849 1.21535 0.76718 0.82722 0.90314 1.90784 1.50875 1.65832 1.34337 0.88416 0.90039 0.91662 0.80576 0.80027 0.82334 0.74966 0.95139 0.94389 0.94148 0.90585 0.93684 0.95266 0.91117 0.93280 0.93843 0.72887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.30 71.98 0.67 -2.45 16 2 C 0.07 1.51 3.81 29.87 0.11 1.62 16 3 H 0.16 3.20 8.14 -2.39 -0.02 3.18 16 4 O -0.30 -8.60 8.29 -69.35 -0.58 -9.18 16 5 C 0.11 2.72 5.85 22.92 0.13 2.85 16 6 C 0.07 1.12 6.54 38.11 0.25 1.37 16 7 C -0.08 -0.67 9.94 22.39 0.22 -0.44 16 8 C -0.10 -0.79 10.02 22.24 0.22 -0.57 16 9 C -0.07 -1.00 9.54 22.56 0.22 -0.79 16 10 C -0.15 -3.57 5.88 -20.05 -0.12 -3.69 16 11 C 0.55 18.17 7.77 86.70 0.67 18.84 16 12 O -0.57 -24.43 15.20 16.74 0.25 -24.18 16 13 N -0.70 -21.88 4.97 -466.26 -2.32 -24.20 16 14 C 0.16 6.61 4.51 86.38 0.39 7.00 16 15 C 0.03 1.41 0.50 -52.93 -0.03 1.38 16 16 C -0.15 -5.28 7.74 71.98 0.56 -4.72 16 17 C -0.14 -5.28 7.90 71.98 0.57 -4.72 16 18 C -0.62 -34.00 8.42 25.60 0.22 -33.79 16 19 H 0.01 0.65 7.99 -2.91 -0.02 0.63 16 20 C -0.01 -0.61 5.06 84.66 0.43 -0.18 16 21 N -0.93 -57.33 13.70 21.45 0.29 -57.03 16 22 Si 1.09 47.46 23.53 68.60 1.61 49.08 16 23 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.23 -8.19 5.73 99.48 0.57 -7.62 16 25 H -0.26 -10.47 6.69 99.48 0.67 -9.80 16 26 N -0.64 -10.22 5.48 -302.73 -1.66 -11.88 16 27 C 0.50 10.86 7.19 87.63 0.63 11.49 16 28 O -0.54 -14.52 17.95 -3.07 -0.06 -14.57 16 29 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.19 7.81 -2.39 -0.02 1.17 16 32 H 0.18 0.14 8.06 -2.91 -0.02 0.11 16 33 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 34 H 0.16 1.51 6.41 -2.91 -0.02 1.49 16 35 H 0.41 9.55 4.27 -92.71 -0.40 9.15 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.47 2.27 -2.39 -0.01 1.47 16 39 H 0.08 1.95 7.00 -2.39 -0.02 1.93 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.95 7.02 -2.38 -0.02 1.93 16 43 H 0.05 1.93 4.40 -2.39 -0.01 1.92 16 44 H 0.25 15.99 8.73 -92.70 -0.81 15.19 16 45 H 0.43 4.35 8.89 -92.71 -0.82 3.53 16 Total: -1.00 -81.51 356.49 2.32 -79.19 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.38 Total: 19.57 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.15 Total: -6.79 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -3.68 Total: -93.11 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.38 Total: -47.93 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.61 Total: 49.08 kcal Total: -81.51 2.32 -79.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.105 kcal (2) G-P(sol) polarization free energy of solvation -81.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds