Wall clock time and date at job start Tue Mar 31 2020 17:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.44985 * 2 1 4 4 O 1.43009 * 109.42225 * 119.91883 * 2 1 3 5 5 C 1.35688 * 116.73444 * 166.42097 * 4 2 1 6 6 C 1.39413 * 119.55503 * 327.21827 * 5 4 2 7 7 C 1.38402 * 120.06907 * 179.89649 * 6 5 4 8 8 C 1.38576 * 120.15846 * 0.04434 * 7 6 5 9 9 C 1.37780 * 120.41871 * 359.66233 * 8 7 6 10 10 C 1.39781 * 120.71513 * 147.14057 * 5 4 2 11 11 C 1.47551 * 120.23654 * 0.09011 * 10 5 4 12 12 O 1.21584 * 119.99688 * 0.02562 * 11 10 5 13 13 N 1.34771 * 119.99772 * 180.02562 * 11 10 5 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.47127 * 300.00138 * 15 14 13 17 17 C 1.52999 * 109.47317 * 59.99649 * 15 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46616 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 119.99966 * 22 20 18 25 25 H 1.48489 * 109.47200 * 240.00246 * 22 20 18 26 26 N 1.40255 * 119.21669 * 359.86752 * 6 5 4 27 27 C 1.35093 * 118.95408 * 15.50445 * 26 6 5 28 28 O 1.21290 * 120.13857 * 181.69053 * 27 26 6 29 29 H 1.09010 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46863 * 299.93564 * 1 2 3 31 31 H 1.08992 * 109.47622 * 59.93722 * 1 2 3 32 32 H 1.07999 * 119.91930 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.79038 * 179.97438 * 8 7 6 34 34 H 1.07995 * 119.95666 * 180.30330 * 9 8 7 35 35 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 37 37 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 38 38 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 39 39 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 41 41 H 1.09002 * 109.46716 * 60.00091 * 17 15 14 42 42 H 1.09000 * 109.47486 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.47362 * 300.00732 * 17 15 14 44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 45 45 H 0.96996 * 120.51769 * 195.47321 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0055 -0.6727 1.1690 5 6 3.3194 -1.0111 1.1865 6 6 3.9575 -1.3524 -0.0051 7 6 5.2979 -1.6971 0.0002 8 6 6.0100 -1.7053 1.1890 9 6 5.3941 -1.3645 2.3734 10 6 4.0386 -1.0192 2.3851 11 6 3.3743 -0.6602 3.6527 12 8 2.1970 -0.3562 3.6572 13 7 4.0724 -0.6692 4.8054 14 6 3.4126 -0.3132 6.0641 15 6 4.4206 -0.4034 7.2116 16 6 4.9607 -1.8319 7.3050 17 6 5.5777 0.5632 6.9511 18 6 3.7422 -0.0366 8.5063 19 1 2.6965 0.2333 8.5103 20 6 4.4561 -0.0467 9.6858 21 7 5.7294 -0.3759 9.6808 22 14 3.6153 0.4086 11.2905 23 1 2.1913 0.7375 11.0272 24 1 3.6923 -0.7371 12.2321 25 1 4.2936 1.5867 11.8879 26 7 3.2253 -1.3417 -1.2013 27 6 2.0318 -0.7095 -1.2319 28 8 1.3666 -0.7131 -2.2461 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5129 0.8906 31 1 -0.3634 0.5148 -0.8893 32 1 5.7900 -1.9607 -0.9243 33 1 7.0556 -1.9757 1.1863 34 1 5.9574 -1.3686 3.2948 35 1 5.0115 -0.9120 4.8019 36 1 3.0276 0.7043 5.9974 37 1 2.5886 -1.0021 6.2500 38 1 5.4515 -2.0967 6.3686 39 1 5.6791 -1.8960 8.1222 40 1 4.1364 -2.5205 7.4906 41 1 5.1930 1.5809 6.8846 42 1 6.2961 0.4986 7.7684 43 1 6.0686 0.2984 6.0146 44 1 6.2316 -0.3834 10.5107 45 1 3.5707 -1.7810 -1.9941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:42 Heat of formation + Delta-G solvation = -78.806390 kcal Electronic energy + Delta-G solvation = -28709.559744 eV Core-core repulsion = 24692.426098 eV Total energy + Delta-G solvation = -4017.133646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82144 -39.74604 -38.55440 -37.77848 -36.33720 -35.38300 -33.32186 -32.32945 -31.26583 -30.28409 -29.24955 -25.92264 -25.74490 -25.31440 -24.98089 -23.66496 -23.31929 -20.58724 -19.86988 -19.34110 -18.77969 -18.13055 -17.36026 -16.75918 -16.33250 -15.85167 -15.43989 -15.29165 -15.05840 -14.74011 -14.61177 -14.54156 -14.33956 -13.50081 -13.34304 -13.17101 -12.95365 -12.72652 -12.58520 -12.38230 -12.30582 -12.16631 -11.80030 -11.43684 -11.41395 -11.21315 -11.09150 -10.88229 -10.67015 -10.40385 -10.31644 -10.21025 -9.65136 -9.58011 -9.27114 -8.99187 -8.79600 -8.45414 -8.31188 -8.25766 -6.03587 -4.13316 0.55615 0.79562 1.93852 2.38363 2.92501 3.00999 3.26680 3.35417 3.39575 3.49007 3.75730 3.78030 4.31700 4.40364 4.48741 4.61103 4.67258 4.83202 4.93236 5.01570 5.23556 5.31666 5.49176 5.51137 5.61857 5.74061 5.88436 6.04130 6.08958 6.23759 6.30643 6.32280 6.43688 6.49455 6.76807 6.79652 6.91637 7.00231 7.00561 7.05680 7.33999 7.42736 7.53993 7.68518 7.99515 8.02446 8.14103 8.37257 8.68058 8.87789 9.52705 10.97912 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.002717 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.348143 B =10301.464230 C =11348.659569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 H 0.105 0.895 4 O -0.265 6.265 5 C 0.135 3.865 6 C 0.076 3.924 7 C -0.103 4.103 8 C -0.118 4.118 9 C -0.076 4.076 10 C -0.118 4.118 11 C 0.546 3.454 12 O -0.525 6.525 13 N -0.711 5.711 14 C 0.133 3.867 15 C 0.056 3.944 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.505 4.505 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 N -0.659 5.659 27 C 0.494 3.506 28 O -0.509 6.509 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.396 0.604 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.005 0.995 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.086 0.914 43 H 0.005 0.995 44 H 0.259 0.741 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 -2.173 -20.060 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 H 0.123 0.877 4 O -0.178 6.178 5 C 0.086 3.914 6 C -0.019 4.019 7 C -0.124 4.124 8 C -0.137 4.137 9 C -0.096 4.096 10 C -0.123 4.123 11 C 0.331 3.669 12 O -0.403 6.403 13 N -0.363 5.363 14 C 0.011 3.989 15 C 0.055 3.945 16 C -0.189 4.189 17 C -0.189 4.189 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 N -0.307 5.307 27 C 0.280 3.720 28 O -0.383 6.383 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.232 0.768 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.024 0.976 44 H 0.069 0.931 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.428 -1.889 -20.196 20.289 hybrid contribution 0.539 -0.144 0.318 0.642 sum 0.967 -2.033 -19.878 20.005 Atomic orbital electron populations 1.21691 0.88689 1.04447 1.04211 1.22720 0.98583 0.96411 0.80860 0.87745 1.86528 1.20086 1.72769 1.38374 1.18545 0.83795 0.97675 0.91401 1.17938 0.92847 1.06083 0.85063 1.20750 0.90813 1.01158 0.99654 1.20898 1.00565 1.01028 0.91203 1.21334 0.92461 0.96515 0.99284 1.19694 0.93482 1.06239 0.92875 1.17879 0.86681 0.79058 0.83244 1.90803 1.15136 1.47826 1.86495 1.46231 1.14215 1.68343 1.07504 1.21748 0.96474 0.99289 0.81422 1.18365 0.91626 0.93059 0.91463 1.21839 1.00693 0.97069 0.99304 1.21837 1.00322 0.97897 0.98820 1.21028 0.96522 1.45872 0.90928 0.92335 1.24876 0.94844 0.94905 0.98887 1.69811 1.07358 1.48533 1.26781 0.86519 0.79840 0.78033 0.83533 1.19735 1.21080 1.21079 1.43709 1.20100 1.54489 1.12376 1.21701 0.80376 0.78848 0.91037 1.90775 1.55142 1.58983 1.33401 0.91102 0.89604 0.89228 0.84654 0.84307 0.84183 0.76773 0.92533 0.92526 0.97555 0.89555 0.95361 0.95376 0.89559 0.97568 0.93071 0.74553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.14 37.15 0.34 -1.02 16 2 C 0.07 0.86 3.68 -27.86 -0.10 0.76 16 3 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 4 O -0.26 -3.91 8.20 -40.46 -0.33 -4.24 16 5 C 0.13 1.82 6.45 -38.57 -0.25 1.57 16 6 C 0.08 0.79 6.54 -83.50 -0.55 0.24 16 7 C -0.10 -0.80 9.94 -39.40 -0.39 -1.20 16 8 C -0.12 -0.94 10.02 -39.62 -0.40 -1.33 16 9 C -0.08 -0.80 9.54 -39.13 -0.37 -1.17 16 10 C -0.12 -1.65 5.88 -104.91 -0.62 -2.26 16 11 C 0.55 9.60 7.76 -12.47 -0.10 9.51 16 12 O -0.53 -11.02 15.20 -16.40 -0.25 -11.27 16 13 N -0.71 -12.35 4.91 -61.34 -0.30 -12.65 16 14 C 0.13 2.76 4.50 -4.04 -0.02 2.74 16 15 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 16 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 17 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 18 C -0.50 -12.98 8.01 -34.44 -0.28 -13.26 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 21 N -0.89 -23.14 9.35 55.43 0.52 -22.62 16 22 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 N -0.66 -6.35 5.48 -9.67 -0.05 -6.40 16 27 C 0.49 5.75 7.65 -10.81 -0.08 5.67 16 28 O -0.51 -6.94 17.01 5.55 0.09 -6.84 16 29 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.79 7.86 -51.93 -0.41 0.39 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 1.28 6.41 -52.49 -0.34 0.95 16 35 H 0.40 6.04 4.20 -40.82 -0.17 5.86 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 39 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 43 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 44 H 0.26 6.53 8.31 -40.82 -0.34 6.20 16 45 H 0.42 2.95 8.89 -40.82 -0.36 2.59 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -31.07 364.31 -8.20 -39.27 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.97 Total: 5.93 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.38 Total: -2.09 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.16 Total: -41.68 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.49 Total: -22.35 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.07 -8.20 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.540 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds