Wall clock time and date at job start Tue Mar 31 2020 17:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.44985 * 2 1 4 4 O 1.43009 * 109.42225 * 119.91883 * 2 1 3 5 5 C 1.35688 * 116.73444 * 166.42097 * 4 2 1 6 6 C 1.39413 * 119.55503 * 327.21827 * 5 4 2 7 7 C 1.38402 * 120.06907 * 179.89649 * 6 5 4 8 8 C 1.38576 * 120.15846 * 0.04434 * 7 6 5 9 9 C 1.37780 * 120.41871 * 359.66233 * 8 7 6 10 10 C 1.39781 * 120.71513 * 147.14057 * 5 4 2 11 11 C 1.47551 * 120.23654 * 0.09011 * 10 5 4 12 12 O 1.21584 * 119.99688 * 0.02562 * 11 10 5 13 13 N 1.34771 * 119.99772 * 180.02562 * 11 10 5 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.47127 * 300.00138 * 15 14 13 17 17 C 1.52999 * 109.47317 * 59.99649 * 15 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46616 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 119.99966 * 22 20 18 25 25 H 1.48489 * 109.47200 * 240.00246 * 22 20 18 26 26 N 1.40255 * 119.21669 * 359.86752 * 6 5 4 27 27 C 1.35093 * 118.95408 * 15.50445 * 26 6 5 28 28 O 1.21290 * 120.13857 * 181.69053 * 27 26 6 29 29 H 1.09010 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46863 * 299.93564 * 1 2 3 31 31 H 1.08992 * 109.47622 * 59.93722 * 1 2 3 32 32 H 1.07999 * 119.91930 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.79038 * 179.97438 * 8 7 6 34 34 H 1.07995 * 119.95666 * 180.30330 * 9 8 7 35 35 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 37 37 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 38 38 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 39 39 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 41 41 H 1.09002 * 109.46716 * 60.00091 * 17 15 14 42 42 H 1.09000 * 109.47486 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.47362 * 300.00732 * 17 15 14 44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 45 45 H 0.96996 * 120.51769 * 195.47321 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0055 -0.6727 1.1690 5 6 3.3194 -1.0111 1.1865 6 6 3.9575 -1.3524 -0.0051 7 6 5.2979 -1.6971 0.0002 8 6 6.0100 -1.7053 1.1890 9 6 5.3941 -1.3645 2.3734 10 6 4.0386 -1.0192 2.3851 11 6 3.3743 -0.6602 3.6527 12 8 2.1970 -0.3562 3.6572 13 7 4.0724 -0.6692 4.8054 14 6 3.4126 -0.3132 6.0641 15 6 4.4206 -0.4034 7.2116 16 6 4.9607 -1.8319 7.3050 17 6 5.5777 0.5632 6.9511 18 6 3.7422 -0.0366 8.5063 19 1 2.6965 0.2333 8.5103 20 6 4.4561 -0.0467 9.6858 21 7 5.7294 -0.3759 9.6808 22 14 3.6153 0.4086 11.2905 23 1 2.1913 0.7375 11.0272 24 1 3.6923 -0.7371 12.2321 25 1 4.2936 1.5867 11.8879 26 7 3.2253 -1.3417 -1.2013 27 6 2.0318 -0.7095 -1.2319 28 8 1.3666 -0.7131 -2.2461 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5129 0.8906 31 1 -0.3634 0.5148 -0.8893 32 1 5.7900 -1.9607 -0.9243 33 1 7.0556 -1.9757 1.1863 34 1 5.9574 -1.3686 3.2948 35 1 5.0115 -0.9120 4.8019 36 1 3.0276 0.7043 5.9974 37 1 2.5886 -1.0021 6.2500 38 1 5.4515 -2.0967 6.3686 39 1 5.6791 -1.8960 8.1222 40 1 4.1364 -2.5205 7.4906 41 1 5.1930 1.5809 6.8846 42 1 6.2961 0.4986 7.7684 43 1 6.0686 0.2984 6.0146 44 1 6.2316 -0.3834 10.5107 45 1 3.5707 -1.7810 -1.9941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:41 Heat of formation + Delta-G solvation = -98.451177 kcal Electronic energy + Delta-G solvation = -28710.411606 eV Core-core repulsion = 24692.426098 eV Total energy + Delta-G solvation = -4017.985508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.70207 -40.92868 -39.69414 -38.65878 -38.03125 -36.26457 -34.97897 -33.18926 -32.86729 -31.41781 -30.06319 -27.52656 -27.52263 -26.97750 -26.03554 -24.64690 -24.28174 -21.79815 -20.81457 -20.57090 -20.17023 -19.20542 -18.24873 -17.95499 -17.57919 -17.28620 -16.61878 -16.55183 -16.32176 -15.98920 -15.81466 -15.50968 -15.43689 -14.90222 -14.71858 -14.52978 -14.16525 -13.94859 -13.92427 -13.38247 -13.24917 -13.17022 -13.14529 -13.02609 -12.67455 -12.60665 -12.55862 -12.28691 -12.22468 -12.11799 -11.92929 -11.45466 -11.29023 -11.19508 -10.81639 -10.65279 -10.37837 -10.02480 -9.69781 -9.08608 -8.00774 -6.15774 -0.29665 -0.02919 1.08257 1.42291 1.46875 1.55874 1.58205 1.91242 2.12091 2.25308 2.49786 2.75024 2.82731 3.23026 3.48929 3.64344 3.78929 3.87280 3.95543 4.22376 4.24713 4.39905 4.54090 4.54541 4.65865 4.69905 4.75166 4.87783 5.00760 5.02888 5.06333 5.09019 5.15170 5.23110 5.31863 5.38118 5.39138 5.59552 5.61258 5.64568 5.70106 5.70959 6.17466 6.19150 6.24459 6.46349 6.63032 6.69279 6.88298 7.33037 7.51829 8.98260 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.002717 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.348143 B =10301.464230 C =11348.659569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.066 3.934 3 H 0.115 0.885 4 O -0.296 6.296 5 C 0.110 3.890 6 C 0.069 3.931 7 C -0.078 4.078 8 C -0.104 4.104 9 C -0.073 4.073 10 C -0.147 4.147 11 C 0.544 3.456 12 O -0.570 6.570 13 N -0.704 5.704 14 C 0.149 3.851 15 C 0.052 3.948 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.529 4.529 19 H 0.042 0.958 20 C 0.030 3.970 21 N -0.897 5.897 22 Si 0.943 3.057 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.281 1.281 26 N -0.646 5.646 27 C 0.496 3.504 28 O -0.533 6.533 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.153 0.847 35 H 0.408 0.592 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.260 0.740 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -3.012 -22.057 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.007 3.993 3 H 0.133 0.867 4 O -0.209 6.209 5 C 0.061 3.939 6 C -0.026 4.026 7 C -0.098 4.098 8 C -0.122 4.122 9 C -0.093 4.093 10 C -0.151 4.151 11 C 0.332 3.668 12 O -0.450 6.450 13 N -0.356 5.356 14 C 0.026 3.974 15 C 0.052 3.948 16 C -0.180 4.180 17 C -0.179 4.179 18 C -0.567 4.567 19 H 0.061 0.939 20 C -0.170 4.170 21 N -0.536 5.536 22 Si 0.770 3.230 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.207 1.207 26 N -0.295 5.295 27 C 0.283 3.717 28 O -0.410 6.410 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.195 0.805 33 H 0.198 0.802 34 H 0.171 0.829 35 H 0.247 0.753 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 3.094 -2.749 -22.204 22.586 hybrid contribution -0.212 0.088 0.887 0.916 sum 2.882 -2.661 -21.317 21.675 Atomic orbital electron populations 1.21685 0.88252 1.04044 1.04690 1.22886 0.99111 0.96848 0.80439 0.86721 1.86485 1.21314 1.73377 1.39760 1.18841 0.83610 0.98826 0.92594 1.18034 0.93847 1.06653 0.84092 1.21289 0.89294 0.97782 1.01471 1.21367 1.02223 0.98796 0.89825 1.21571 0.90818 0.95681 1.01184 1.19448 0.95076 1.09682 0.90923 1.18495 0.86244 0.77708 0.84318 1.90771 1.17226 1.49770 1.87265 1.45989 1.14642 1.68535 1.06464 1.21283 0.95699 0.97793 0.82656 1.18353 0.92029 0.93730 0.90733 1.21685 0.99827 0.96247 1.00199 1.21679 0.99426 0.97134 0.99664 1.21309 0.96160 1.46370 0.92885 0.93924 1.25409 0.95453 0.95034 1.01086 1.69903 1.07825 1.48635 1.27263 0.85742 0.78749 0.77811 0.80709 1.20187 1.20750 1.20690 1.43545 1.19366 1.53815 1.12743 1.21613 0.80815 0.78842 0.90459 1.90762 1.55982 1.60159 1.34061 0.91923 0.89933 0.87830 0.80452 0.80183 0.82916 0.75322 0.94322 0.94493 0.94137 0.91726 0.96460 0.96371 0.91753 0.94121 0.93017 0.72880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.14 71.98 0.66 -2.10 16 2 C 0.07 1.57 3.68 29.86 0.11 1.68 16 3 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 4 O -0.30 -8.98 8.20 -69.32 -0.57 -9.54 16 5 C 0.11 2.88 6.45 22.93 0.15 3.03 16 6 C 0.07 1.25 6.54 38.11 0.25 1.50 16 7 C -0.08 -0.82 9.94 22.39 0.22 -0.59 16 8 C -0.10 -1.08 10.02 22.24 0.22 -0.86 16 9 C -0.07 -1.28 9.54 22.56 0.22 -1.06 16 10 C -0.15 -3.93 5.88 -20.05 -0.12 -4.05 16 11 C 0.54 19.40 7.76 86.70 0.67 20.07 16 12 O -0.57 -25.06 15.20 16.76 0.25 -24.81 16 13 N -0.70 -24.22 4.91 -466.26 -2.29 -26.51 16 14 C 0.15 6.36 4.50 86.38 0.39 6.75 16 15 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 16 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 17 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 18 C -0.53 -27.78 8.01 25.60 0.21 -27.58 16 19 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 20 C 0.03 1.56 5.15 84.65 0.44 2.00 16 21 N -0.90 -46.94 9.35 21.45 0.20 -46.74 16 22 Si 0.94 42.34 29.54 68.60 2.03 44.37 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 26 N -0.65 -11.01 5.48 -302.72 -1.66 -12.67 16 27 C 0.50 11.17 7.65 87.63 0.67 11.84 16 28 O -0.53 -14.21 17.01 -3.06 -0.05 -14.26 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.10 1.86 7.86 -2.39 -0.02 1.84 16 32 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 33 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.15 2.20 6.41 -2.91 -0.02 2.18 16 35 H 0.41 11.67 4.20 -92.71 -0.39 11.28 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 39 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 43 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 44 H 0.26 13.08 8.31 -92.71 -0.77 12.31 16 45 H 0.43 4.79 8.89 -92.71 -0.82 3.96 16 Total: -1.00 -70.66 364.31 2.96 -67.70 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.17 Total: 18.81 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.22 Total: 3.67 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.75 Total: -85.92 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.37 Total: -48.62 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -70.66 2.96 -67.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.752 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds