Wall clock time and date at job start Tue Mar 31 2020 16:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 O 1.42895 * 109.47144 * 120.00280 * 2 1 3 5 5 C 1.35915 * 117.00022 * 156.91310 * 4 2 1 6 6 C 1.38906 * 119.96858 * 356.32894 * 5 4 2 7 7 C 1.38288 * 120.28835 * 180.02562 * 6 5 4 8 8 C 1.37939 * 120.22822 * 0.02562 * 7 6 5 9 9 C 1.39821 * 119.94417 * 0.02562 * 8 7 6 10 10 C 1.47213 * 120.14654 * 179.97438 * 9 8 7 11 11 C 1.34810 * 120.00534 * 136.50910 * 10 9 8 12 12 C 1.46434 * 119.99511 * 348.89613 * 11 10 9 13 13 O 1.21692 * 119.99951 * 353.21013 * 12 11 10 14 14 N 1.34770 * 119.99952 * 173.21423 * 12 11 10 15 15 C 1.46501 * 120.00108 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47166 * 179.97438 * 15 14 12 17 17 O 1.21295 * 119.99978 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99844 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99943 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99682 * 0.02562 * 19 18 16 21 21 C 1.38942 * 119.99906 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00240 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99780 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46999 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46681 * 120.00187 * 23 21 19 26 26 H 1.48493 * 109.47255 * 240.00213 * 23 21 19 27 27 C 1.38376 * 119.97188 * 176.60739 * 5 4 2 28 28 H 1.09000 * 109.47026 * 299.99792 * 1 2 3 29 29 H 1.09002 * 109.47454 * 59.99792 * 1 2 3 30 30 H 1.09006 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47026 * 240.00208 * 2 1 3 32 32 H 1.08996 * 109.47056 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47145 * 300.00396 * 3 2 1 34 34 H 1.09000 * 109.47020 * 60.00204 * 3 2 1 35 35 H 1.08005 * 119.85173 * 359.97438 * 6 5 4 36 36 H 1.07993 * 119.88239 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.02526 * 180.02562 * 8 7 6 38 38 H 1.08006 * 120.00131 * 316.50875 * 10 9 8 39 39 H 1.07993 * 120.00335 * 168.89317 * 11 10 9 40 40 H 0.97008 * 119.99962 * 359.97438 * 14 12 11 41 41 H 1.09003 * 109.47000 * 299.99527 * 15 14 12 42 42 H 1.08996 * 109.47106 * 59.99564 * 15 14 12 43 43 H 0.96994 * 120.00100 * 0.02562 * 18 16 15 44 44 H 0.96999 * 119.99605 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.11907 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2624 -1.1901 1.1115 6 6 3.9913 -1.1173 -0.0687 7 6 5.2695 -1.6411 -0.1325 8 6 5.8304 -2.2406 0.9760 9 6 5.1049 -2.3201 2.1686 10 6 5.6990 -2.9595 3.3541 11 6 5.5660 -2.3863 4.5670 12 6 5.0497 -1.0205 4.6786 13 8 4.8575 -0.3588 3.6756 14 7 4.7876 -0.4964 5.8922 15 6 4.2705 0.8698 6.0039 16 6 4.0630 1.2112 7.4571 17 8 4.3220 0.3938 8.3150 18 7 3.5906 2.4250 7.8033 19 6 3.4013 2.7354 9.1252 20 1 3.6311 2.0073 9.8891 21 6 2.9138 3.9866 9.4821 22 7 2.6336 4.8723 8.5526 23 14 2.6551 4.4092 11.2833 24 1 3.0425 3.2484 12.1246 25 1 3.4932 5.5815 11.6418 26 1 1.2248 4.7337 11.5152 27 6 3.8117 -1.7931 2.2293 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.5574 -0.6503 -0.9406 36 1 5.8302 -1.5812 -1.0535 37 1 6.8292 -2.6482 0.9226 38 1 6.2415 -3.8879 3.2522 39 1 5.8401 -2.9343 5.4563 40 1 4.9405 -1.0240 6.6918 41 1 4.9856 1.5659 5.5654 42 1 3.3206 0.9432 5.4745 43 1 3.3838 3.0787 7.1172 44 1 2.2929 5.7456 8.8019 45 1 3.2442 -1.8539 3.1462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492841155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:57 Heat of formation + Delta-G solvation = -62.803598 kcal Electronic energy + Delta-G solvation = -27718.566476 eV Core-core repulsion = 23702.126763 eV Total energy + Delta-G solvation = -4016.439713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.39799 -39.55169 -38.28249 -37.50163 -34.49105 -33.83070 -33.55358 -33.22544 -31.37664 -30.02619 -29.59538 -27.73005 -27.38149 -24.85148 -23.81810 -22.67450 -22.00913 -20.67214 -19.70001 -19.17738 -18.34617 -17.96018 -16.79422 -16.25217 -15.94637 -15.64166 -15.44696 -15.31794 -15.13038 -14.57401 -14.26134 -14.21092 -13.96954 -13.84422 -13.61904 -13.31899 -13.16099 -12.76751 -12.64528 -12.48345 -12.38767 -12.16856 -11.92189 -11.85852 -11.63310 -11.58381 -11.31057 -11.13904 -10.98837 -10.55367 -10.40520 -10.32028 -9.99203 -9.65793 -9.64096 -8.74124 -8.62128 -8.15651 -8.09467 -7.99385 -6.50887 -3.92850 0.70350 1.59295 1.87320 3.10592 3.18413 3.22507 3.28898 3.49009 3.51930 3.75908 3.88856 4.12556 4.57650 4.63838 4.72770 4.83278 4.89186 4.90414 4.95700 5.09866 5.17842 5.23921 5.31915 5.34620 5.35991 5.54779 5.58360 5.60548 5.65319 5.89987 5.91733 5.97236 5.99356 6.04778 6.08834 6.12100 6.16115 6.39370 6.46089 6.60005 6.73226 6.82541 7.46801 7.52704 7.88554 7.93201 8.45397 8.53644 9.05382 9.40257 9.88128 10.66115 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012284 B = 0.002699 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.759913 B =10371.644461 C =12144.872273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 C -0.180 4.180 4 O -0.310 6.310 5 C 0.121 3.879 6 C -0.202 4.202 7 C -0.096 4.096 8 C -0.139 4.139 9 C -0.030 4.030 10 C -0.035 4.035 11 C -0.196 4.196 12 C 0.531 3.469 13 O -0.533 6.533 14 N -0.701 5.701 15 C 0.110 3.890 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.067 4.067 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.410 0.590 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.396 0.604 44 H 0.273 0.727 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 -12.539 -19.370 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.237 4.237 4 O -0.225 6.225 5 C 0.076 3.924 6 C -0.221 4.221 7 C -0.114 4.114 8 C -0.157 4.157 9 C -0.031 4.031 10 C -0.055 4.055 11 C -0.217 4.217 12 C 0.319 3.681 13 O -0.412 6.412 14 N -0.354 5.354 15 C -0.018 4.018 16 C 0.214 3.786 17 O -0.484 6.484 18 N -0.185 5.185 19 C -0.434 4.434 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.086 4.086 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.248 0.752 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.229 0.771 44 H 0.083 0.917 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.432 -12.356 -19.287 22.950 hybrid contribution -0.049 0.728 0.740 1.040 sum 1.383 -11.628 -18.547 21.934 Atomic orbital electron populations 1.21847 0.92599 1.02997 1.03118 1.22390 0.95261 0.92683 0.87525 1.22359 1.02345 0.95943 1.03080 1.86150 1.27901 1.69200 1.39215 1.18714 0.84640 0.95092 0.93913 1.21244 0.96728 1.06661 0.97425 1.20673 0.94586 0.97944 0.98244 1.21018 0.99720 1.02624 0.92344 1.18581 0.93181 0.98163 0.93141 1.22308 0.94045 0.98047 0.91100 1.23080 1.04753 0.95263 0.98561 1.18436 0.78594 0.87833 0.83267 1.90900 1.52626 1.62364 1.35298 1.45705 1.65080 1.15659 1.08965 1.20926 1.00359 0.84014 0.96471 1.19771 0.85251 0.84218 0.89328 1.90494 1.57598 1.49267 1.51067 1.41806 1.55411 1.12207 1.09029 1.19780 1.40912 0.99335 0.83327 0.87636 1.25325 0.96731 0.95467 1.00228 1.69627 1.43876 1.06700 1.33295 0.85762 0.77968 0.78626 0.81760 1.19125 1.20620 1.20608 1.20307 0.94650 0.97796 0.95872 0.91260 0.90680 0.91794 0.91199 0.91779 0.91319 0.91159 0.85860 0.86222 0.86182 0.84433 0.84663 0.75189 0.89929 0.89872 0.77056 0.91662 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.56 37.16 0.36 -0.92 16 2 C 0.08 0.81 2.87 -26.73 -0.08 0.73 16 3 C -0.18 -1.84 9.26 37.16 0.34 -1.49 16 4 O -0.31 -4.41 9.81 -19.47 -0.19 -4.60 16 5 C 0.12 1.74 6.53 -39.28 -0.26 1.48 16 6 C -0.20 -2.44 8.35 -39.32 -0.33 -2.77 16 7 C -0.10 -1.07 10.02 -39.67 -0.40 -1.47 16 8 C -0.14 -1.59 9.79 -39.10 -0.38 -1.97 16 9 C -0.03 -0.39 4.54 -105.08 -0.48 -0.87 16 10 C -0.04 -0.38 9.81 -37.15 -0.36 -0.74 16 11 C -0.20 -2.32 9.91 -37.50 -0.37 -2.69 16 12 C 0.53 8.42 6.78 -12.96 -0.09 8.33 16 13 O -0.53 -9.79 12.16 5.20 0.06 -9.73 16 14 N -0.70 -11.84 5.52 -62.88 -0.35 -12.18 16 15 C 0.11 2.08 6.15 -5.19 -0.03 2.05 16 16 C 0.43 9.97 7.85 -10.98 -0.09 9.88 16 17 O -0.60 -15.44 15.24 5.54 0.08 -15.35 16 18 N -0.55 -13.81 5.29 -10.96 -0.06 -13.87 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 20 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 22 N -0.89 -24.07 13.05 55.50 0.72 -23.35 16 23 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.07 -1.00 6.54 -38.95 -0.25 -1.26 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.63 5.97 -51.93 -0.31 0.32 16 32 H 0.06 0.72 7.34 -51.93 -0.38 0.34 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.12 1.23 5.67 -52.48 -0.30 0.93 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 39 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.41 6.76 7.42 -40.82 -0.30 6.45 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 43 H 0.40 9.60 7.90 -40.82 -0.32 9.28 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 45 H 0.12 1.93 7.02 -52.49 -0.37 1.56 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -32.67 381.09 -7.81 -40.48 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -6.14 Total: 16.83 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.66 Total: 0.39 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.32 Total: -49.40 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.04 Total: -29.68 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.67 -7.81 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492841155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.323 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds