Wall clock time and date at job start Tue Mar 31 2020 16:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 O 1.42895 * 109.47144 * 120.00280 * 2 1 3 5 5 C 1.35915 * 117.00022 * 156.91310 * 4 2 1 6 6 C 1.38906 * 119.96858 * 356.32894 * 5 4 2 7 7 C 1.38288 * 120.28835 * 180.02562 * 6 5 4 8 8 C 1.37939 * 120.22822 * 0.02562 * 7 6 5 9 9 C 1.39821 * 119.94417 * 0.02562 * 8 7 6 10 10 C 1.47213 * 120.14654 * 179.97438 * 9 8 7 11 11 C 1.34810 * 120.00534 * 136.50910 * 10 9 8 12 12 C 1.46434 * 119.99511 * 348.89613 * 11 10 9 13 13 O 1.21692 * 119.99951 * 353.21013 * 12 11 10 14 14 N 1.34770 * 119.99952 * 173.21423 * 12 11 10 15 15 C 1.46501 * 120.00108 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47166 * 179.97438 * 15 14 12 17 17 O 1.21295 * 119.99978 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99844 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99943 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99682 * 0.02562 * 19 18 16 21 21 C 1.38942 * 119.99906 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00240 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99780 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46999 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46681 * 120.00187 * 23 21 19 26 26 H 1.48493 * 109.47255 * 240.00213 * 23 21 19 27 27 C 1.38376 * 119.97188 * 176.60739 * 5 4 2 28 28 H 1.09000 * 109.47026 * 299.99792 * 1 2 3 29 29 H 1.09002 * 109.47454 * 59.99792 * 1 2 3 30 30 H 1.09006 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47026 * 240.00208 * 2 1 3 32 32 H 1.08996 * 109.47056 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47145 * 300.00396 * 3 2 1 34 34 H 1.09000 * 109.47020 * 60.00204 * 3 2 1 35 35 H 1.08005 * 119.85173 * 359.97438 * 6 5 4 36 36 H 1.07993 * 119.88239 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.02526 * 180.02562 * 8 7 6 38 38 H 1.08006 * 120.00131 * 316.50875 * 10 9 8 39 39 H 1.07993 * 120.00335 * 168.89317 * 11 10 9 40 40 H 0.97008 * 119.99962 * 359.97438 * 14 12 11 41 41 H 1.09003 * 109.47000 * 299.99527 * 15 14 12 42 42 H 1.08996 * 109.47106 * 59.99564 * 15 14 12 43 43 H 0.96994 * 120.00100 * 0.02562 * 18 16 15 44 44 H 0.96999 * 119.99605 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.11907 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2624 -1.1901 1.1115 6 6 3.9913 -1.1173 -0.0687 7 6 5.2695 -1.6411 -0.1325 8 6 5.8304 -2.2406 0.9760 9 6 5.1049 -2.3201 2.1686 10 6 5.6990 -2.9595 3.3541 11 6 5.5660 -2.3863 4.5670 12 6 5.0497 -1.0205 4.6786 13 8 4.8575 -0.3588 3.6756 14 7 4.7876 -0.4964 5.8922 15 6 4.2705 0.8698 6.0039 16 6 4.0630 1.2112 7.4571 17 8 4.3220 0.3938 8.3150 18 7 3.5906 2.4250 7.8033 19 6 3.4013 2.7354 9.1252 20 1 3.6311 2.0073 9.8891 21 6 2.9138 3.9866 9.4821 22 7 2.6336 4.8723 8.5526 23 14 2.6551 4.4092 11.2833 24 1 3.0425 3.2484 12.1246 25 1 3.4932 5.5815 11.6418 26 1 1.2248 4.7337 11.5152 27 6 3.8117 -1.7931 2.2293 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.5574 -0.6503 -0.9406 36 1 5.8302 -1.5812 -1.0535 37 1 6.8292 -2.6482 0.9226 38 1 6.2415 -3.8879 3.2522 39 1 5.8401 -2.9343 5.4563 40 1 4.9405 -1.0240 6.6918 41 1 4.9856 1.5659 5.5654 42 1 3.3206 0.9432 5.4745 43 1 3.3838 3.0787 7.1172 44 1 2.2929 5.7456 8.8019 45 1 3.2442 -1.8539 3.1462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492841155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:56 Heat of formation + Delta-G solvation = -84.706946 kcal Electronic energy + Delta-G solvation = -27719.516276 eV Core-core repulsion = 23702.126763 eV Total energy + Delta-G solvation = -4017.389513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42651 -40.82451 -39.98217 -38.53920 -36.27329 -35.31620 -34.64377 -34.09013 -33.40147 -31.03196 -30.57196 -29.21598 -28.17793 -26.64193 -24.93818 -23.60708 -23.05567 -21.66742 -21.39815 -20.46338 -19.99845 -19.31598 -17.98697 -17.32038 -17.14836 -17.11402 -16.67963 -16.60730 -16.44258 -16.21254 -15.70866 -15.45111 -15.23780 -14.92808 -14.88392 -14.42155 -14.17528 -13.98061 -13.67716 -13.57884 -13.55830 -13.45099 -13.28398 -13.14385 -12.92751 -12.71583 -12.47337 -12.45563 -12.16843 -12.12260 -11.83746 -11.60274 -11.41011 -11.03387 -10.73238 -10.58956 -10.16208 -10.07131 -9.13097 -8.98016 -8.53286 -6.03917 -0.23907 0.64719 0.93432 1.33393 1.41233 1.55729 1.86979 2.11192 2.28104 2.34106 2.41140 2.95351 3.11457 3.13649 3.76483 3.79281 3.91023 3.94297 4.03337 4.04825 4.20161 4.26891 4.37303 4.39415 4.41619 4.44137 4.54848 4.64920 4.69540 4.77368 4.83172 4.88248 5.07793 5.16865 5.19000 5.22820 5.26881 5.32252 5.37136 5.47907 5.57064 5.67566 5.89481 5.95389 6.44198 6.60318 6.60930 7.00850 7.25773 7.41671 7.90991 8.63986 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012284 B = 0.002699 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.759913 B =10371.644461 C =12144.872273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 C -0.176 4.176 4 O -0.339 6.339 5 C 0.099 3.901 6 C -0.206 4.206 7 C -0.097 4.097 8 C -0.140 4.140 9 C -0.047 4.047 10 C -0.014 4.014 11 C -0.213 4.213 12 C 0.527 3.473 13 O -0.561 6.561 14 N -0.705 5.705 15 C 0.126 3.874 16 C 0.433 3.567 17 O -0.623 6.623 18 N -0.560 5.560 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.998 3.002 24 H -0.269 1.269 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.095 4.095 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.413 0.587 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.398 0.602 44 H 0.280 0.720 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 -13.427 -20.843 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.233 4.233 4 O -0.254 6.254 5 C 0.054 3.946 6 C -0.225 4.225 7 C -0.114 4.114 8 C -0.158 4.158 9 C -0.048 4.048 10 C -0.033 4.033 11 C -0.233 4.233 12 C 0.317 3.683 13 O -0.442 6.442 14 N -0.359 5.359 15 C -0.002 4.002 16 C 0.220 3.780 17 O -0.511 6.511 18 N -0.195 5.195 19 C -0.467 4.467 20 H 0.105 0.895 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.114 4.114 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.201 0.799 39 H 0.183 0.817 40 H 0.251 0.749 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.232 0.768 44 H 0.090 0.910 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.479 -13.253 -20.784 24.774 hybrid contribution -0.378 0.974 1.053 1.484 sum 2.101 -12.278 -19.731 23.334 Atomic orbital electron populations 1.21879 0.91349 1.03283 1.03754 1.22686 0.96288 0.92516 0.87148 1.22340 1.01407 0.96104 1.03482 1.86121 1.28263 1.69718 1.41292 1.18991 0.85086 0.95710 0.94801 1.21509 0.97198 1.06568 0.97188 1.21133 0.94218 0.96605 0.99491 1.21427 1.00784 1.01982 0.91649 1.18944 0.92719 0.98283 0.94822 1.22780 0.92177 0.98793 0.89556 1.23126 1.06235 0.93477 1.00453 1.19162 0.77630 0.89311 0.82153 1.90894 1.53809 1.63549 1.35976 1.45738 1.65677 1.14715 1.09734 1.20662 1.00827 0.85711 0.93049 1.20411 0.83493 0.83224 0.90860 1.90465 1.58241 1.49855 1.52529 1.41864 1.56158 1.12940 1.08557 1.19788 1.43001 0.99890 0.83972 0.89542 1.26161 0.95721 0.94793 1.04505 1.69694 1.43805 1.07091 1.35095 0.84795 0.78312 0.78310 0.76457 1.19362 1.19524 1.19575 1.20324 0.95915 0.99840 0.95370 0.92701 0.87899 0.91690 0.89430 0.93130 0.88441 0.93161 0.84024 0.83022 0.83138 0.79866 0.81677 0.74917 0.89285 0.89703 0.76835 0.91045 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.56 71.98 0.69 -1.75 16 2 C 0.07 1.43 2.87 30.60 0.09 1.52 16 3 C -0.18 -3.58 9.26 71.98 0.67 -2.91 16 4 O -0.34 -10.07 9.81 -92.59 -0.91 -10.98 16 5 C 0.10 2.89 6.53 22.46 0.15 3.04 16 6 C -0.21 -4.76 8.35 22.44 0.19 -4.57 16 7 C -0.10 -1.90 10.02 22.21 0.22 -1.68 16 8 C -0.14 -2.85 9.79 22.58 0.22 -2.63 16 9 C -0.05 -1.17 4.54 -20.16 -0.09 -1.26 16 10 C -0.01 -0.26 9.81 23.84 0.23 -0.03 16 11 C -0.21 -4.73 9.91 23.62 0.23 -4.49 16 12 C 0.53 16.85 6.78 86.38 0.59 17.43 16 13 O -0.56 -21.14 12.16 -4.32 -0.05 -21.20 16 14 N -0.70 -24.23 5.52 -471.08 -2.60 -26.83 16 15 C 0.13 4.89 6.15 85.63 0.53 5.42 16 16 C 0.43 20.75 7.85 87.66 0.69 21.44 16 17 O -0.62 -33.01 15.24 -3.07 -0.05 -33.06 16 18 N -0.56 -29.03 5.29 -306.98 -1.62 -30.66 16 19 C -0.34 -18.97 9.68 84.04 0.81 -18.15 16 20 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 21 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 22 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 23 Si 1.00 42.31 29.55 68.60 2.03 44.34 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 C -0.10 -2.92 6.54 22.68 0.15 -2.78 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.46 5.97 -2.39 -0.01 1.45 16 32 H 0.05 1.15 7.34 -2.39 -0.02 1.13 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.14 2.58 5.67 -2.91 -0.02 2.57 16 36 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.41 13.77 7.42 -92.70 -0.69 13.09 16 41 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.40 19.95 7.90 -92.71 -0.73 19.22 16 44 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 45 H 0.10 3.28 7.02 -2.91 -0.02 3.26 16 Total: -1.00 -73.30 381.09 2.52 -70.79 By element: Atomic # 1 Polarization: 48.79 SS G_CDS: -0.39 Total: 48.40 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 5.83 Total: 8.46 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -3.94 Total: -106.76 kcal Atomic # 8 Polarization: -64.23 SS G_CDS: -1.01 Total: -65.24 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -73.30 2.52 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492841155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.921 kcal (2) G-P(sol) polarization free energy of solvation -73.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds