Wall clock time and date at job start Tue Mar 31 2020 16:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47547 * 2 1 4 4 O 1.42901 * 109.47464 * 120.00683 * 2 1 3 5 5 C 1.35906 * 117.00310 * 84.64489 * 4 2 1 6 6 C 1.38910 * 119.97161 * 354.89071 * 5 4 2 7 7 C 1.38285 * 120.28901 * 180.30238 * 6 5 4 8 8 C 1.37936 * 120.23240 * 359.72678 * 7 6 5 9 9 C 1.39833 * 119.94005 * 0.02562 * 8 7 6 10 10 C 1.47211 * 120.14590 * 179.97438 * 9 8 7 11 11 C 1.34807 * 119.99959 * 0.02562 * 10 9 8 12 12 C 1.46432 * 120.00502 * 180.02562 * 11 10 9 13 13 O 1.21701 * 119.99518 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00573 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00118 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47199 * 180.02562 * 15 14 12 17 17 O 1.21296 * 119.99707 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00142 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00147 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99516 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99990 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99654 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00205 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47375 * 89.99622 * 23 21 19 25 25 H 1.48495 * 109.47376 * 209.99818 * 23 21 19 26 26 H 1.48499 * 109.47158 * 330.00112 * 23 21 19 27 27 C 1.38378 * 119.97343 * 174.64451 * 5 4 2 28 28 H 1.09003 * 109.46896 * 299.99181 * 1 2 3 29 29 H 1.08996 * 109.47122 * 59.99714 * 1 2 3 30 30 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47067 * 240.00303 * 2 1 3 32 32 H 1.08997 * 109.47696 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47077 * 300.00935 * 3 2 1 34 34 H 1.09005 * 109.46690 * 60.00073 * 3 2 1 35 35 H 1.07998 * 119.85015 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.87881 * 179.70286 * 7 6 5 37 37 H 1.08003 * 120.03395 * 179.97438 * 8 7 6 38 38 H 1.07997 * 120.00294 * 180.02562 * 10 9 8 39 39 H 1.08007 * 119.99759 * 0.02562 * 11 10 9 40 40 H 0.97006 * 119.99999 * 0.02562 * 14 12 11 41 41 H 1.09004 * 109.47383 * 300.00201 * 15 14 12 42 42 H 1.08995 * 109.47458 * 60.00375 * 15 14 12 43 43 H 0.97001 * 120.00135 * 359.97438 * 18 16 15 44 44 H 0.97001 * 119.99893 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.11585 * 359.96866 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.1056 -2.0276 1.1002 6 6 1.6517 -2.7021 -0.0262 7 6 1.7437 -4.0800 -0.0982 8 6 2.2923 -4.7950 0.9461 9 6 2.7569 -4.1254 2.0823 10 6 3.3427 -4.8839 3.1997 11 6 3.4326 -6.2271 3.1287 12 6 4.0147 -6.9819 4.2403 13 8 4.4170 -6.3965 5.2286 14 7 4.1051 -8.3247 4.1692 15 6 4.6870 -9.0797 5.2816 16 6 4.6712 -10.5504 4.9532 17 8 4.2180 -10.9305 3.8942 18 7 5.1597 -11.4434 5.8365 19 6 5.1449 -12.7814 5.5380 20 1 4.7413 -13.1198 4.5951 21 6 5.6491 -13.7020 6.4485 22 7 5.6353 -14.9845 6.1621 23 14 6.3464 -13.1167 8.0796 24 1 5.2639 -13.0782 9.0955 25 1 7.4114 -14.0502 8.5262 26 1 6.9181 -11.7562 7.9138 27 6 2.6632 -2.7324 2.1523 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.2211 -2.1483 -0.8473 36 1 1.3844 -4.5982 -0.9750 37 1 2.3622 -5.8711 0.8866 38 1 3.7004 -4.3644 4.0763 39 1 3.0752 -6.7467 2.2518 40 1 3.7848 -8.7912 3.3813 41 1 5.7149 -8.7548 5.4429 42 1 4.1039 -8.9026 6.1853 43 1 5.5218 -11.1394 6.6835 44 1 5.9869 -15.6272 6.7978 45 1 3.0205 -2.2086 3.0266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492841159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:01 Heat of formation + Delta-G solvation = -71.424921 kcal Electronic energy + Delta-G solvation = -26015.096102 eV Core-core repulsion = 21998.282540 eV Total energy + Delta-G solvation = -4016.813562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.68484 -39.69027 -38.46729 -38.10281 -34.58559 -34.15692 -33.74943 -33.57009 -31.81403 -30.77535 -29.66188 -28.04079 -27.67920 -24.99155 -24.01027 -22.92255 -22.37559 -20.66983 -19.83883 -19.46984 -18.62929 -18.20739 -17.43479 -16.64506 -16.14097 -15.88132 -15.59158 -15.46791 -15.33959 -14.98585 -14.67546 -14.46412 -14.00756 -13.91977 -13.88345 -13.56687 -13.26608 -13.10227 -12.90578 -12.80761 -12.53297 -12.47050 -12.35774 -12.18319 -12.12348 -11.78166 -11.61323 -11.31960 -11.24179 -11.03979 -10.64890 -10.41313 -10.07442 -9.91702 -9.70703 -8.97062 -8.78697 -8.75902 -8.39086 -8.31262 -6.41603 -3.94258 0.27766 1.11080 1.79491 2.72060 2.99168 3.03932 3.11956 3.26957 3.31790 3.54629 3.62726 4.03007 4.21077 4.33900 4.37923 4.47787 4.51344 4.56191 4.65290 4.80842 4.88642 4.99762 5.05060 5.09300 5.13299 5.16587 5.18606 5.23487 5.39517 5.55578 5.56083 5.62732 5.65715 5.77208 5.80455 5.83187 5.92464 6.06162 6.13223 6.38447 6.39786 6.55037 7.05284 7.43188 7.73101 7.99340 8.33964 8.45178 8.80723 9.28874 9.62270 10.70531 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.040008 B = 0.001530 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.691529 B =18294.566891 C =18859.272175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 C -0.149 4.149 4 O -0.311 6.311 5 C 0.129 3.871 6 C -0.205 4.205 7 C -0.080 4.080 8 C -0.141 4.141 9 C -0.029 4.029 10 C -0.034 4.034 11 C -0.189 4.189 12 C 0.543 3.457 13 O -0.554 6.554 14 N -0.701 5.701 15 C 0.106 3.894 16 C 0.438 3.562 17 O -0.579 6.579 18 N -0.576 5.576 19 C -0.311 4.311 20 H 0.122 0.878 21 C 0.046 3.954 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 C -0.133 4.133 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.413 0.587 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.375 0.625 44 H 0.276 0.724 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 30.280 -12.087 33.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.225 6.225 5 C 0.084 3.916 6 C -0.223 4.223 7 C -0.098 4.098 8 C -0.159 4.159 9 C -0.029 4.029 10 C -0.053 4.053 11 C -0.210 4.210 12 C 0.332 3.668 13 O -0.434 6.434 14 N -0.354 5.354 15 C -0.022 4.022 16 C 0.224 3.776 17 O -0.463 6.463 18 N -0.213 5.213 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.158 4.158 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C -0.151 4.151 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.252 0.748 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.208 0.792 44 H 0.086 0.914 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.197 30.276 -11.868 33.536 hybrid contribution 0.331 -0.136 0.721 0.805 sum -7.867 30.140 -11.146 33.084 Atomic orbital electron populations 1.22401 0.94985 1.03238 1.03273 1.22451 0.94393 0.93753 0.87369 1.21860 1.02232 0.93410 1.03144 1.86137 1.81204 1.16237 1.38919 1.18829 0.95707 0.82674 0.94404 1.21411 1.06559 0.95676 0.98704 1.20890 0.97305 0.93204 0.98436 1.21393 1.00561 1.00489 0.93423 1.18789 0.97886 0.92152 0.94060 1.22280 0.93058 0.93717 0.96287 1.23005 1.03543 0.95105 0.99357 1.18262 0.79237 0.82036 0.87313 1.90798 1.49768 1.69603 1.33241 1.45599 1.61985 1.06143 1.21667 1.20989 0.99984 0.90915 0.90331 1.19637 0.85081 0.86695 0.86234 1.90539 1.50947 1.79795 1.25060 1.42123 1.54648 1.07414 1.17152 1.19449 1.39341 0.78905 1.06243 0.86069 1.25062 0.97288 0.95078 0.98413 1.69621 1.44657 1.00638 1.36368 0.86669 0.79873 0.79057 0.83888 1.19382 1.19967 1.19226 1.20596 1.03029 0.92614 0.98882 0.91303 0.90950 0.91725 0.90840 0.91550 0.90467 0.91364 0.85276 0.85383 0.85036 0.84396 0.84989 0.74837 0.89607 0.89592 0.79223 0.91375 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.89 9.17 37.16 0.34 -0.55 16 2 C 0.08 0.45 2.85 -26.73 -0.08 0.37 16 3 C -0.15 -0.66 9.56 37.16 0.36 -0.30 16 4 O -0.31 -2.76 9.80 -19.45 -0.19 -2.95 16 5 C 0.13 1.20 6.59 -39.28 -0.26 0.94 16 6 C -0.20 -1.62 8.23 -39.32 -0.32 -1.94 16 7 C -0.08 -0.63 10.02 -39.67 -0.40 -1.03 16 8 C -0.14 -1.25 9.41 -39.10 -0.37 -1.62 16 9 C -0.03 -0.29 5.87 -105.08 -0.62 -0.90 16 10 C -0.03 -0.37 9.46 -37.16 -0.35 -0.72 16 11 C -0.19 -2.21 9.41 -37.50 -0.35 -2.57 16 12 C 0.54 8.29 7.74 -12.96 -0.10 8.19 16 13 O -0.55 -10.02 16.23 5.19 0.08 -9.94 16 14 N -0.70 -11.16 5.52 -62.88 -0.35 -11.51 16 15 C 0.11 1.83 6.15 -5.20 -0.03 1.80 16 16 C 0.44 9.59 7.85 -10.99 -0.09 9.51 16 17 O -0.58 -14.54 15.24 5.54 0.08 -14.46 16 18 N -0.58 -13.37 5.09 -10.96 -0.06 -13.42 16 19 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 20 H 0.12 3.79 7.39 -52.48 -0.39 3.41 16 21 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 22 N -0.87 -24.90 13.96 55.50 0.77 -24.12 16 23 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 27 C -0.13 -1.30 9.73 -38.95 -0.38 -1.68 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.35 6.90 -51.93 -0.36 0.00 16 31 H 0.07 0.37 6.31 -51.93 -0.33 0.05 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.13 0.76 5.40 -52.49 -0.28 0.47 16 36 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.13 1.00 6.16 -52.48 -0.32 0.68 16 38 H 0.14 1.55 7.52 -52.49 -0.39 1.15 16 39 H 0.13 1.23 6.07 -52.48 -0.32 0.91 16 40 H 0.41 6.40 7.42 -40.82 -0.30 6.09 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 44 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -33.38 382.35 -7.40 -40.79 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -5.90 Total: 13.66 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.89 Total: 1.93 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.37 Total: -49.06 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.02 Total: -27.35 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.38 -7.40 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492841159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.638 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds