Wall clock time and date at job start Tue Mar 31 2020 16:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47547 * 2 1 4 4 O 1.42901 * 109.47464 * 120.00683 * 2 1 3 5 5 C 1.35906 * 117.00310 * 84.64489 * 4 2 1 6 6 C 1.38910 * 119.97161 * 354.89071 * 5 4 2 7 7 C 1.38285 * 120.28901 * 180.30238 * 6 5 4 8 8 C 1.37936 * 120.23240 * 359.72678 * 7 6 5 9 9 C 1.39833 * 119.94005 * 0.02562 * 8 7 6 10 10 C 1.47211 * 120.14590 * 179.97438 * 9 8 7 11 11 C 1.34807 * 119.99959 * 0.02562 * 10 9 8 12 12 C 1.46432 * 120.00502 * 180.02562 * 11 10 9 13 13 O 1.21701 * 119.99518 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00573 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00118 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47199 * 180.02562 * 15 14 12 17 17 O 1.21296 * 119.99707 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00142 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00147 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99516 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99990 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99654 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00205 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47375 * 89.99622 * 23 21 19 25 25 H 1.48495 * 109.47376 * 209.99818 * 23 21 19 26 26 H 1.48499 * 109.47158 * 330.00112 * 23 21 19 27 27 C 1.38378 * 119.97343 * 174.64451 * 5 4 2 28 28 H 1.09003 * 109.46896 * 299.99181 * 1 2 3 29 29 H 1.08996 * 109.47122 * 59.99714 * 1 2 3 30 30 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47067 * 240.00303 * 2 1 3 32 32 H 1.08997 * 109.47696 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47077 * 300.00935 * 3 2 1 34 34 H 1.09005 * 109.46690 * 60.00073 * 3 2 1 35 35 H 1.07998 * 119.85015 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.87881 * 179.70286 * 7 6 5 37 37 H 1.08003 * 120.03395 * 179.97438 * 8 7 6 38 38 H 1.07997 * 120.00294 * 180.02562 * 10 9 8 39 39 H 1.08007 * 119.99759 * 0.02562 * 11 10 9 40 40 H 0.97006 * 119.99999 * 0.02562 * 14 12 11 41 41 H 1.09004 * 109.47383 * 300.00201 * 15 14 12 42 42 H 1.08995 * 109.47458 * 60.00375 * 15 14 12 43 43 H 0.97001 * 120.00135 * 359.97438 * 18 16 15 44 44 H 0.97001 * 119.99893 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.11585 * 359.96866 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.1056 -2.0276 1.1002 6 6 1.6517 -2.7021 -0.0262 7 6 1.7437 -4.0800 -0.0982 8 6 2.2923 -4.7950 0.9461 9 6 2.7569 -4.1254 2.0823 10 6 3.3427 -4.8839 3.1997 11 6 3.4326 -6.2271 3.1287 12 6 4.0147 -6.9819 4.2403 13 8 4.4170 -6.3965 5.2286 14 7 4.1051 -8.3247 4.1692 15 6 4.6870 -9.0797 5.2816 16 6 4.6712 -10.5504 4.9532 17 8 4.2180 -10.9305 3.8942 18 7 5.1597 -11.4434 5.8365 19 6 5.1449 -12.7814 5.5380 20 1 4.7413 -13.1198 4.5951 21 6 5.6491 -13.7020 6.4485 22 7 5.6353 -14.9845 6.1621 23 14 6.3464 -13.1167 8.0796 24 1 5.2639 -13.0782 9.0955 25 1 7.4114 -14.0502 8.5262 26 1 6.9181 -11.7562 7.9138 27 6 2.6632 -2.7324 2.1523 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.2211 -2.1483 -0.8473 36 1 1.3844 -4.5982 -0.9750 37 1 2.3622 -5.8711 0.8866 38 1 3.7004 -4.3644 4.0763 39 1 3.0752 -6.7467 2.2518 40 1 3.7848 -8.7912 3.3813 41 1 5.7149 -8.7548 5.4429 42 1 4.1039 -8.9026 6.1853 43 1 5.5218 -11.1394 6.6835 44 1 5.9869 -15.6272 6.7978 45 1 3.0205 -2.2086 3.0266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492841159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:00 Heat of formation + Delta-G solvation = -94.359391 kcal Electronic energy + Delta-G solvation = -26016.090615 eV Core-core repulsion = 21998.282540 eV Total energy + Delta-G solvation = -4017.808075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.32330 -41.02066 -40.02410 -38.88742 -36.30703 -35.34956 -34.91260 -34.10744 -33.83521 -31.51099 -30.47293 -29.33696 -28.13330 -26.54924 -25.09428 -23.59566 -23.12955 -21.53334 -21.48687 -20.75367 -20.22697 -18.93090 -18.65886 -17.46637 -17.25796 -16.97693 -16.76298 -16.75142 -16.39700 -16.29597 -15.73039 -15.48378 -15.26061 -14.99395 -14.73963 -14.55564 -14.36565 -14.17572 -14.01891 -13.81372 -13.65430 -13.38260 -13.20185 -13.17163 -12.96903 -12.87574 -12.44878 -12.37922 -12.17729 -12.00420 -11.85117 -11.58328 -11.56093 -11.16180 -11.15427 -10.66361 -10.34013 -10.21287 -9.51639 -9.09240 -8.45722 -6.07771 -0.52690 0.45440 0.95424 1.31199 1.34080 1.43902 1.78429 2.00588 2.20337 2.22565 2.25192 2.87212 2.88171 3.10652 3.57599 3.76908 3.86345 3.93243 3.96156 4.00480 4.06906 4.15474 4.22020 4.30947 4.39971 4.40976 4.43518 4.51808 4.69491 4.80725 4.85107 4.88717 4.92331 5.09801 5.16690 5.19925 5.25904 5.27377 5.33928 5.44881 5.48714 5.63083 5.75936 5.87931 6.46894 6.47705 6.51102 6.77949 7.12691 7.29417 7.77591 8.70676 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.040008 B = 0.001530 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.691529 B =18294.566891 C =18859.272175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.068 3.932 3 C -0.148 4.148 4 O -0.328 6.328 5 C 0.117 3.883 6 C -0.200 4.200 7 C -0.082 4.082 8 C -0.145 4.145 9 C -0.045 4.045 10 C -0.015 4.015 11 C -0.203 4.203 12 C 0.546 3.454 13 O -0.585 6.585 14 N -0.704 5.704 15 C 0.117 3.883 16 C 0.445 3.555 17 O -0.614 6.614 18 N -0.578 5.578 19 C -0.333 4.333 20 H 0.064 0.936 21 C -0.006 4.006 22 N -0.925 5.925 23 Si 0.958 3.042 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.233 1.233 27 C -0.146 4.146 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.156 0.844 40 H 0.416 0.584 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.392 0.608 44 H 0.281 0.719 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 32.797 -12.108 35.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.012 3.988 3 C -0.205 4.205 4 O -0.243 6.243 5 C 0.072 3.928 6 C -0.218 4.218 7 C -0.100 4.100 8 C -0.163 4.163 9 C -0.045 4.045 10 C -0.035 4.035 11 C -0.223 4.223 12 C 0.336 3.664 13 O -0.468 6.468 14 N -0.357 5.357 15 C -0.011 4.011 16 C 0.232 3.768 17 O -0.500 6.500 18 N -0.218 5.218 19 C -0.462 4.462 20 H 0.082 0.918 21 C -0.206 4.206 22 N -0.565 5.565 23 Si 0.778 3.222 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.157 1.157 27 C -0.165 4.165 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.174 0.826 40 H 0.254 0.746 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.228 0.772 44 H 0.091 0.909 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.351 32.822 -11.906 35.900 hybrid contribution 0.276 -0.798 0.541 1.003 sum -8.075 32.024 -11.365 34.927 Atomic orbital electron populations 1.22387 0.94225 1.03039 1.03937 1.22733 0.95059 0.94227 0.86764 1.21893 1.01911 0.92730 1.03973 1.86126 1.81464 1.16127 1.40605 1.18971 0.95968 0.83102 0.94751 1.21704 1.05443 0.95988 0.98662 1.21230 0.96553 0.93256 0.98929 1.21638 1.00137 1.01300 0.93227 1.18764 0.99153 0.92205 0.94370 1.22324 0.91461 0.93547 0.96190 1.22907 1.05054 0.95064 0.99259 1.18706 0.78449 0.81550 0.87664 1.90780 1.51331 1.69976 1.34703 1.45629 1.62201 1.06466 1.21391 1.20900 1.01657 0.87115 0.91436 1.20496 0.82678 0.88495 0.85100 1.90527 1.51766 1.81050 1.26614 1.41929 1.55604 1.05926 1.18291 1.19047 1.40809 0.81380 1.04939 0.91792 1.26047 0.96936 0.94713 1.02933 1.69781 1.45865 1.02410 1.38437 0.85450 0.79205 0.80095 0.77412 1.18103 1.19808 1.15656 1.20717 1.03528 0.92843 0.99397 0.92087 0.88859 0.92311 0.89883 0.92088 0.88281 0.91888 0.83184 0.82782 0.83789 0.85149 0.82636 0.74596 0.87795 0.87698 0.77218 0.90914 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 9.17 71.98 0.66 -0.76 16 2 C 0.07 0.68 2.85 30.59 0.09 0.77 16 3 C -0.15 -1.09 9.56 71.98 0.69 -0.40 16 4 O -0.33 -5.59 9.80 -92.50 -0.91 -6.49 16 5 C 0.12 2.06 6.59 22.46 0.15 2.21 16 6 C -0.20 -2.73 8.23 22.44 0.18 -2.55 16 7 C -0.08 -1.07 10.02 22.21 0.22 -0.85 16 8 C -0.15 -2.31 9.41 22.58 0.21 -2.09 16 9 C -0.04 -0.85 5.87 -20.16 -0.12 -0.97 16 10 C -0.02 -0.32 9.46 23.84 0.23 -0.10 16 11 C -0.20 -4.49 9.41 23.62 0.22 -4.27 16 12 C 0.55 16.05 7.74 86.38 0.67 16.72 16 13 O -0.59 -20.59 16.23 -4.35 -0.07 -20.66 16 14 N -0.70 -21.59 5.52 -471.09 -2.60 -24.19 16 15 C 0.12 3.84 6.15 85.63 0.53 4.36 16 16 C 0.44 19.36 7.85 87.66 0.69 20.05 16 17 O -0.61 -31.45 15.24 -3.08 -0.05 -31.50 16 18 N -0.58 -26.55 5.09 -306.98 -1.56 -28.11 16 19 C -0.33 -18.88 10.16 84.04 0.85 -18.03 16 20 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 21 C -0.01 -0.33 5.50 84.93 0.47 0.13 16 22 N -0.93 -54.27 13.96 21.66 0.30 -53.97 16 23 Si 0.96 38.10 27.74 68.60 1.90 40.01 16 24 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.23 -7.93 6.52 99.48 0.65 -7.29 16 27 C -0.15 -2.80 9.73 22.68 0.22 -2.58 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.54 6.90 -2.39 -0.02 0.52 16 31 H 0.08 0.66 6.31 -2.38 -0.02 0.64 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.15 1.34 5.40 -2.91 -0.02 1.32 16 36 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.14 1.85 6.16 -2.91 -0.02 1.83 16 38 H 0.13 2.92 7.52 -2.91 -0.02 2.90 16 39 H 0.16 2.62 6.07 -2.91 -0.02 2.60 16 40 H 0.42 12.56 7.42 -92.70 -0.69 11.87 16 41 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 42 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.39 15.13 5.76 -92.71 -0.53 14.59 16 44 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -75.63 382.35 2.74 -72.89 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: -0.24 Total: 40.39 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 5.96 Total: 11.64 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -3.86 Total: -106.27 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -1.02 Total: -58.65 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.01 kcal Total: -75.63 2.74 -72.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492841159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.470 kcal (2) G-P(sol) polarization free energy of solvation -75.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds