Wall clock time and date at job start Tue Mar 31 2020 16:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 O 1.42905 * 109.47150 * 119.99970 * 2 1 3 5 5 C 1.35741 * 116.99978 * 155.37567 * 4 2 1 6 6 C 1.39025 * 119.88543 * 5.08735 * 5 4 2 7 7 C 1.37662 * 120.11372 * 179.75776 * 6 5 4 8 8 C 1.39971 * 119.88202 * 0.53926 * 7 6 5 9 9 C 1.47000 * 120.11122 * 179.69153 * 8 7 6 10 10 C 1.34973 * 119.99933 * 0.02653 * 9 8 7 11 11 C 1.46267 * 119.99884 * 179.97438 * 10 9 8 12 12 O 1.21722 * 120.00028 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99695 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99770 * 180.02562 * 13 11 10 15 15 C 1.50690 * 109.47119 * 180.02562 * 14 13 11 16 16 O 1.21299 * 120.00314 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99916 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99941 * 359.97438 * 18 17 15 20 20 C 1.38954 * 120.00001 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99677 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00032 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46636 * 59.99793 * 22 20 18 24 24 H 1.48495 * 109.47033 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.46956 * 299.99909 * 22 20 18 26 26 C 1.39969 * 119.77520 * 359.71682 * 8 7 6 27 27 C 1.37667 * 119.88656 * 359.97438 * 26 8 7 28 28 H 1.09001 * 109.46851 * 300.00020 * 1 2 3 29 29 H 1.09001 * 109.47299 * 59.99586 * 1 2 3 30 30 H 1.08999 * 109.47370 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46851 * 239.99979 * 2 1 3 32 32 H 1.09001 * 109.47189 * 60.00187 * 3 2 1 33 33 H 1.09000 * 109.47607 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47236 * 299.99635 * 3 2 1 35 35 H 1.08002 * 119.94067 * 0.02562 * 6 5 4 36 36 H 1.07997 * 120.05608 * 180.24908 * 7 6 5 37 37 H 1.08007 * 120.00195 * 180.02562 * 9 8 7 38 38 H 1.07997 * 120.00297 * 359.97438 * 10 9 8 39 39 H 0.96993 * 120.00315 * 359.97438 * 13 11 10 40 40 H 1.09003 * 109.46496 * 300.00399 * 14 13 11 41 41 H 1.09000 * 109.46931 * 59.99891 * 14 13 11 42 42 H 0.96995 * 119.99973 * 0.02562 * 17 15 14 43 43 H 0.97001 * 119.99660 * 180.02562 * 21 20 18 44 44 H 1.08007 * 120.05823 * 179.97438 * 26 8 7 45 45 H 1.07998 * 119.93952 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2483 -1.2173 1.1006 6 6 4.0347 -1.0130 -0.0275 7 6 5.2969 -1.5580 -0.0975 8 6 5.7838 -2.3284 0.9648 9 6 7.1282 -2.9184 0.8925 10 6 7.8956 -2.7172 -0.1995 11 6 9.2336 -3.3038 -0.2712 12 8 9.6548 -3.9738 0.6537 13 7 9.9997 -3.1033 -1.3618 14 6 11.3396 -3.6914 -1.4339 15 6 11.9816 -3.3192 -2.7454 16 8 11.3793 -2.6301 -3.5416 17 7 13.2253 -3.7512 -3.0335 18 6 13.8096 -3.4122 -4.2266 19 1 13.2730 -2.7993 -4.9357 20 6 15.0917 -3.8579 -4.5238 21 7 15.7443 -4.6041 -3.6610 22 14 15.8874 -3.3966 -6.1496 23 1 15.9895 -1.9184 -6.2488 24 1 17.2458 -3.9921 -6.2224 25 1 15.0598 -3.9120 -7.2696 26 6 4.9859 -2.5355 2.0961 27 6 3.7276 -1.9808 2.1589 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.6564 -0.4221 -0.8485 36 1 5.9085 -1.3954 -0.9726 37 1 7.5020 -3.5129 1.7131 38 1 7.5218 -2.1231 -1.0202 39 1 9.6636 -2.5704 -2.0992 40 1 11.9472 -3.3127 -0.6119 41 1 11.2647 -4.7763 -1.3605 42 1 13.7071 -4.3019 -2.3967 43 1 16.6395 -4.9150 -3.8684 44 1 5.3569 -3.1295 2.9183 45 1 3.1111 -2.1403 3.0312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492918465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:15 Heat of formation + Delta-G solvation = -79.363502 kcal Electronic energy + Delta-G solvation = -26012.588757 eV Core-core repulsion = 21995.430953 eV Total energy + Delta-G solvation = -4017.157804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.70054 -39.55975 -38.37607 -37.98837 -34.49998 -34.23311 -33.64139 -33.08415 -31.41857 -31.38228 -29.40332 -27.85860 -27.52348 -24.83799 -23.78908 -23.71931 -21.69342 -20.84430 -19.76433 -19.23030 -18.79001 -18.07799 -17.47276 -16.22016 -16.06322 -15.92603 -15.48994 -15.23478 -15.19185 -14.90971 -14.62099 -14.40894 -14.08546 -13.82364 -13.75359 -13.68587 -13.27071 -13.25445 -12.92730 -12.78083 -12.50194 -12.30092 -12.18653 -11.95641 -11.91601 -11.63238 -11.57099 -11.36948 -11.10664 -10.94106 -10.50934 -10.31670 -10.00548 -9.79714 -9.62861 -9.39095 -8.79278 -8.63502 -8.10479 -8.04179 -6.51483 -3.93637 0.41078 1.02480 1.86747 2.73455 3.13597 3.21362 3.24390 3.33985 3.44767 3.66728 3.75396 4.11455 4.21967 4.33451 4.43937 4.46291 4.57420 4.60618 4.88359 4.88549 4.96788 5.01763 5.03776 5.11536 5.16971 5.20019 5.22847 5.27190 5.43865 5.55627 5.62935 5.67738 5.82211 5.89669 5.94041 5.97183 5.98488 6.07587 6.27699 6.38009 6.46409 6.69894 7.03352 7.45651 7.84842 7.91721 8.43843 8.48680 9.04273 9.39085 9.87068 10.65278 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022646 B = 0.001589 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.127944 B =17621.984308 C =18721.884716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.182 4.182 4 O -0.310 6.310 5 C 0.140 3.860 6 C -0.213 4.213 7 C -0.060 4.060 8 C -0.110 4.110 9 C -0.023 4.023 10 C -0.206 4.206 11 C 0.543 3.457 12 O -0.556 6.556 13 N -0.702 5.702 14 C 0.109 3.891 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.548 5.548 18 C -0.307 4.307 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.055 4.055 27 C -0.157 4.157 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.411 0.589 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.396 0.604 43 H 0.275 0.725 44 H 0.136 0.864 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.368 7.526 9.931 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.019 3.981 3 C -0.239 4.239 4 O -0.224 6.224 5 C 0.095 3.905 6 C -0.232 4.232 7 C -0.078 4.078 8 C -0.110 4.110 9 C -0.043 4.043 10 C -0.226 4.226 11 C 0.332 3.668 12 O -0.437 6.437 13 N -0.354 5.354 14 C -0.019 4.019 15 C 0.213 3.787 16 O -0.485 6.485 17 N -0.183 5.183 18 C -0.436 4.436 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.074 4.074 27 C -0.175 4.175 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.249 0.751 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.230 0.770 43 H 0.085 0.915 44 H 0.153 0.847 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -27.360 7.428 10.152 30.114 hybrid contribution 0.770 0.212 -1.050 1.319 sum -26.591 7.640 9.103 29.125 Atomic orbital electron populations 1.21860 0.92302 1.03267 1.03178 1.22490 0.95529 0.92741 0.87336 1.22404 1.02389 0.95826 1.03316 1.86089 1.29095 1.68080 1.39092 1.19214 0.84416 0.92605 0.94305 1.21238 0.96229 1.06678 0.99004 1.21277 0.94589 0.94087 0.97824 1.18964 0.94795 1.01674 0.95568 1.22248 0.90718 0.94045 0.97295 1.22911 0.94761 1.04576 1.00400 1.18234 0.85571 0.80813 0.82206 1.90796 1.74422 1.40795 1.37703 1.45614 1.16048 1.53493 1.20275 1.20956 0.83877 0.99216 0.97865 1.19752 0.83865 0.86348 0.88704 1.90493 1.63830 1.43324 1.50839 1.41789 1.12761 1.45271 1.18493 1.19688 0.98159 1.30804 0.94946 0.87726 1.25327 0.96503 0.96280 0.99553 1.69611 1.13595 1.34455 1.35778 0.85864 0.77945 0.78913 0.81188 1.19792 1.20844 1.19789 1.21199 0.92426 0.96811 0.96918 1.20364 0.97102 1.01183 0.98896 0.91413 0.90379 0.91577 0.90660 0.91344 0.91624 0.90832 0.84988 0.84964 0.84617 0.85422 0.75057 0.89780 0.89778 0.77013 0.91531 0.84657 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.56 37.16 0.36 -0.31 16 2 C 0.07 0.45 2.85 -26.74 -0.08 0.37 16 3 C -0.18 -0.95 9.16 37.15 0.34 -0.61 16 4 O -0.31 -2.67 9.79 -18.93 -0.19 -2.85 16 5 C 0.14 1.27 6.61 -39.00 -0.26 1.01 16 6 C -0.21 -1.81 8.20 -39.50 -0.32 -2.13 16 7 C -0.06 -0.55 9.40 -39.14 -0.37 -0.92 16 8 C -0.11 -1.09 5.87 -105.05 -0.62 -1.70 16 9 C -0.02 -0.26 9.45 -37.19 -0.35 -0.61 16 10 C -0.21 -2.54 9.41 -37.52 -0.35 -2.89 16 11 C 0.54 8.79 7.74 -13.03 -0.10 8.69 16 12 O -0.56 -10.62 16.23 5.17 0.08 -10.54 16 13 N -0.70 -11.89 5.52 -62.93 -0.35 -12.24 16 14 C 0.11 2.03 6.15 -5.19 -0.03 2.00 16 15 C 0.43 9.86 7.85 -10.99 -0.09 9.78 16 16 O -0.60 -15.33 15.24 5.54 0.08 -15.24 16 17 N -0.55 -13.65 5.29 -10.96 -0.06 -13.71 16 18 C -0.31 -8.35 9.68 -14.93 -0.14 -8.49 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 20 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16 21 N -0.89 -23.88 13.05 55.50 0.72 -23.15 16 22 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C -0.06 -0.48 9.79 -39.14 -0.38 -0.87 16 27 C -0.16 -1.36 9.97 -39.50 -0.39 -1.75 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.41 6.30 -51.93 -0.33 0.09 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.39 6.89 -51.93 -0.36 0.04 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.13 0.88 5.40 -52.49 -0.28 0.60 16 36 H 0.13 1.04 6.16 -52.49 -0.32 0.72 16 37 H 0.14 1.55 7.52 -52.48 -0.39 1.16 16 38 H 0.13 1.28 6.07 -52.49 -0.32 0.96 16 39 H 0.41 6.75 7.42 -40.82 -0.30 6.45 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.40 9.48 7.90 -40.82 -0.32 9.16 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 45 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -32.39 385.40 -7.75 -40.14 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -5.95 Total: 14.12 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.89 Total: 2.16 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.32 Total: -49.10 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.02 Total: -28.63 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.39 -7.75 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492918465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.222 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds