Wall clock time and date at job start Tue Mar 31 2020 16:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 O 1.42905 * 109.47150 * 119.99970 * 2 1 3 5 5 C 1.35741 * 116.99978 * 155.37567 * 4 2 1 6 6 C 1.39025 * 119.88543 * 5.08735 * 5 4 2 7 7 C 1.37662 * 120.11372 * 179.75776 * 6 5 4 8 8 C 1.39971 * 119.88202 * 0.53926 * 7 6 5 9 9 C 1.47000 * 120.11122 * 179.69153 * 8 7 6 10 10 C 1.34973 * 119.99933 * 0.02653 * 9 8 7 11 11 C 1.46267 * 119.99884 * 179.97438 * 10 9 8 12 12 O 1.21722 * 120.00028 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99695 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99770 * 180.02562 * 13 11 10 15 15 C 1.50690 * 109.47119 * 180.02562 * 14 13 11 16 16 O 1.21299 * 120.00314 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99916 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99941 * 359.97438 * 18 17 15 20 20 C 1.38954 * 120.00001 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99677 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00032 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46636 * 59.99793 * 22 20 18 24 24 H 1.48495 * 109.47033 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.46956 * 299.99909 * 22 20 18 26 26 C 1.39969 * 119.77520 * 359.71682 * 8 7 6 27 27 C 1.37667 * 119.88656 * 359.97438 * 26 8 7 28 28 H 1.09001 * 109.46851 * 300.00020 * 1 2 3 29 29 H 1.09001 * 109.47299 * 59.99586 * 1 2 3 30 30 H 1.08999 * 109.47370 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46851 * 239.99979 * 2 1 3 32 32 H 1.09001 * 109.47189 * 60.00187 * 3 2 1 33 33 H 1.09000 * 109.47607 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47236 * 299.99635 * 3 2 1 35 35 H 1.08002 * 119.94067 * 0.02562 * 6 5 4 36 36 H 1.07997 * 120.05608 * 180.24908 * 7 6 5 37 37 H 1.08007 * 120.00195 * 180.02562 * 9 8 7 38 38 H 1.07997 * 120.00297 * 359.97438 * 10 9 8 39 39 H 0.96993 * 120.00315 * 359.97438 * 13 11 10 40 40 H 1.09003 * 109.46496 * 300.00399 * 14 13 11 41 41 H 1.09000 * 109.46931 * 59.99891 * 14 13 11 42 42 H 0.96995 * 119.99973 * 0.02562 * 17 15 14 43 43 H 0.97001 * 119.99660 * 180.02562 * 21 20 18 44 44 H 1.08007 * 120.05823 * 179.97438 * 26 8 7 45 45 H 1.07998 * 119.93952 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2483 -1.2173 1.1006 6 6 4.0347 -1.0130 -0.0275 7 6 5.2969 -1.5580 -0.0975 8 6 5.7838 -2.3284 0.9648 9 6 7.1282 -2.9184 0.8925 10 6 7.8956 -2.7172 -0.1995 11 6 9.2336 -3.3038 -0.2712 12 8 9.6548 -3.9738 0.6537 13 7 9.9997 -3.1033 -1.3618 14 6 11.3396 -3.6914 -1.4339 15 6 11.9816 -3.3192 -2.7454 16 8 11.3793 -2.6301 -3.5416 17 7 13.2253 -3.7512 -3.0335 18 6 13.8096 -3.4122 -4.2266 19 1 13.2730 -2.7993 -4.9357 20 6 15.0917 -3.8579 -4.5238 21 7 15.7443 -4.6041 -3.6610 22 14 15.8874 -3.3966 -6.1496 23 1 15.9895 -1.9184 -6.2488 24 1 17.2458 -3.9921 -6.2224 25 1 15.0598 -3.9120 -7.2696 26 6 4.9859 -2.5355 2.0961 27 6 3.7276 -1.9808 2.1589 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.6564 -0.4221 -0.8485 36 1 5.9085 -1.3954 -0.9726 37 1 7.5020 -3.5129 1.7131 38 1 7.5218 -2.1231 -1.0202 39 1 9.6636 -2.5704 -2.0992 40 1 11.9472 -3.3127 -0.6119 41 1 11.2647 -4.7763 -1.3605 42 1 13.7071 -4.3019 -2.3967 43 1 16.6395 -4.9150 -3.8684 44 1 5.3569 -3.1295 2.9183 45 1 3.1111 -2.1403 3.0312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492918465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:14 Heat of formation + Delta-G solvation = -100.263610 kcal Electronic energy + Delta-G solvation = -26013.495054 eV Core-core repulsion = 21995.430953 eV Total energy + Delta-G solvation = -4018.064101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.34262 -40.95105 -39.90324 -38.90351 -36.25780 -35.29556 -34.96034 -33.74448 -33.37247 -32.06643 -30.40773 -28.98584 -28.16360 -26.57673 -24.79059 -24.34781 -22.56777 -21.56159 -21.39688 -20.54756 -19.98113 -19.40434 -18.63113 -17.41007 -17.25411 -16.83112 -16.70464 -16.46564 -16.28281 -16.15109 -15.73150 -15.66247 -15.39802 -15.12969 -14.87062 -14.32300 -14.26311 -13.95188 -13.78218 -13.61654 -13.55320 -13.50505 -13.21841 -13.03322 -12.89962 -12.85405 -12.70691 -12.47075 -12.13401 -12.08993 -11.90241 -11.56346 -11.51640 -11.11447 -10.83111 -10.56658 -10.19965 -10.08326 -10.04676 -8.80642 -8.50890 -6.01436 -0.42621 0.37195 0.99083 1.38319 1.43031 1.54080 1.89934 2.07849 2.19248 2.28121 2.33762 2.88139 3.12796 3.16171 3.65963 3.70194 3.80990 3.89151 3.97342 4.13525 4.14889 4.22752 4.25101 4.28878 4.38367 4.42894 4.46308 4.57849 4.68926 4.80396 4.86566 4.89530 5.00611 5.07363 5.15226 5.20268 5.25217 5.28000 5.34338 5.38181 5.44338 5.66485 5.73771 5.91465 6.42924 6.46389 6.56330 7.03019 7.17714 7.43911 7.93893 8.65692 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022646 B = 0.001589 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.127944 B =17621.984308 C =18721.884716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 C -0.180 4.180 4 O -0.322 6.322 5 C 0.137 3.863 6 C -0.217 4.217 7 C -0.061 4.061 8 C -0.131 4.131 9 C 0.002 3.998 10 C -0.226 4.226 11 C 0.544 3.456 12 O -0.591 6.591 13 N -0.703 5.703 14 C 0.121 3.879 15 C 0.432 3.568 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.340 4.340 19 H 0.087 0.913 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.052 4.052 27 C -0.168 4.168 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.415 0.585 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.399 0.601 43 H 0.280 0.720 44 H 0.153 0.847 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.679 8.182 9.696 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 C -0.237 4.237 4 O -0.236 6.236 5 C 0.091 3.909 6 C -0.236 4.236 7 C -0.079 4.079 8 C -0.131 4.131 9 C -0.018 4.018 10 C -0.246 4.246 11 C 0.336 3.664 12 O -0.474 6.474 13 N -0.356 5.356 14 C -0.007 4.007 15 C 0.219 3.781 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.469 4.469 19 H 0.105 0.895 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.070 4.070 27 C -0.186 4.186 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.253 0.747 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.171 0.829 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -28.691 8.088 9.929 31.420 hybrid contribution 0.988 0.048 -0.881 1.325 sum -27.704 8.135 9.048 30.258 Atomic orbital electron populations 1.21886 0.91169 1.03326 1.04027 1.22750 0.96457 0.92953 0.86728 1.22392 1.01806 0.95466 1.04015 1.86088 1.28838 1.68151 1.40504 1.19448 0.84698 0.92261 0.94514 1.21423 0.95973 1.06750 0.99432 1.21479 0.94942 0.93546 0.97956 1.18974 0.94416 1.03022 0.96684 1.22331 0.90936 0.92238 0.96325 1.22779 0.93134 1.06564 1.02133 1.18765 0.86491 0.80038 0.81121 1.90774 1.75392 1.42510 1.38723 1.45620 1.15413 1.53711 1.20870 1.20773 0.84779 0.99892 0.95270 1.20414 0.83129 0.84893 0.89641 1.90468 1.64339 1.44191 1.52207 1.41840 1.13477 1.45865 1.18215 1.19726 0.99158 1.32142 0.95909 0.89513 1.26139 0.96412 0.95735 1.02767 1.69680 1.13971 1.34704 1.37179 0.84912 0.77289 0.78655 0.77028 1.19494 1.19613 1.19484 1.21426 0.92233 0.96359 0.96970 1.20592 0.97319 1.01247 0.99445 0.91624 0.88482 0.91911 0.90075 0.91761 0.92468 0.89049 0.83374 0.83838 0.85065 0.83153 0.74693 0.88845 0.88833 0.76707 0.91053 0.82945 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.56 71.98 0.69 -0.37 16 2 C 0.07 0.69 2.85 30.59 0.09 0.78 16 3 C -0.18 -1.58 9.16 71.98 0.66 -0.92 16 4 O -0.32 -5.12 9.79 -90.66 -0.89 -6.01 16 5 C 0.14 2.29 6.61 22.64 0.15 2.44 16 6 C -0.22 -3.33 8.20 22.32 0.18 -3.15 16 7 C -0.06 -1.02 9.40 22.55 0.21 -0.81 16 8 C -0.13 -2.40 5.87 -20.14 -0.12 -2.52 16 9 C 0.00 0.03 9.45 23.82 0.23 0.26 16 10 C -0.23 -5.35 9.41 23.61 0.22 -5.13 16 11 C 0.54 17.40 7.74 86.33 0.67 18.06 16 12 O -0.59 -22.47 16.23 -4.42 -0.07 -22.55 16 13 N -0.70 -23.60 5.52 -471.22 -2.60 -26.21 16 14 C 0.12 4.50 6.15 85.63 0.53 5.03 16 15 C 0.43 20.12 7.85 87.65 0.69 20.81 16 16 O -0.62 -32.33 15.24 -3.09 -0.05 -32.37 16 17 N -0.56 -28.24 5.29 -306.98 -1.62 -29.86 16 18 C -0.34 -18.79 9.68 84.04 0.81 -17.98 16 19 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 20 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 21 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 22 Si 1.00 41.70 29.55 68.60 2.03 43.73 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.05 -0.83 9.79 22.55 0.22 -0.60 16 27 C -0.17 -2.66 9.97 22.32 0.22 -2.44 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.74 6.30 -2.39 -0.02 0.72 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.60 6.89 -2.39 -0.02 0.59 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.15 1.69 5.40 -2.91 -0.02 1.68 16 36 H 0.14 1.98 6.16 -2.91 -0.02 1.96 16 37 H 0.13 2.91 7.52 -2.91 -0.02 2.88 16 38 H 0.15 2.78 6.07 -2.91 -0.02 2.76 16 39 H 0.41 13.47 7.42 -92.71 -0.69 12.78 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.40 19.39 7.90 -92.71 -0.73 18.65 16 43 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 44 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -68.96 385.40 2.62 -66.34 By element: Atomic # 1 Polarization: 42.32 SS G_CDS: -0.38 Total: 41.94 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.92 Total: 13.42 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -3.94 Total: -104.49 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -1.01 Total: -60.93 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -68.96 2.62 -66.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492918465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.923 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds