Wall clock time and date at job start Tue Mar 31 2020 16:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 O 1.42902 * 109.47354 * 119.99720 * 2 1 3 5 5 C 1.35735 * 117.00200 * 156.94288 * 4 2 1 6 6 C 1.39023 * 119.88604 * 356.35843 * 5 4 2 7 7 C 1.37663 * 120.10949 * 179.97438 * 6 5 4 8 8 C 1.39967 * 119.88835 * 0.02562 * 7 6 5 9 9 C 1.47000 * 120.11354 * 179.97438 * 8 7 6 10 10 C 1.34970 * 120.00432 * 136.48680 * 9 8 7 11 11 C 1.46257 * 119.99992 * 348.89041 * 10 9 8 12 12 O 1.21721 * 120.00091 * 353.21041 * 11 10 9 13 13 N 1.34783 * 120.00341 * 172.93684 * 11 10 9 14 14 C 1.46493 * 120.00136 * 180.27516 * 13 11 10 15 15 C 1.50699 * 109.47413 * 179.97438 * 14 13 11 16 16 O 1.21299 * 119.99606 * 359.97438 * 15 14 13 17 17 N 1.34768 * 120.00621 * 180.02562 * 15 14 13 18 18 C 1.37089 * 120.00352 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00105 * 0.02562 * 18 17 15 20 20 C 1.38959 * 120.00329 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00270 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99475 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47013 * 90.00115 * 22 20 18 24 24 H 1.48507 * 109.46629 * 209.99684 * 22 20 18 25 25 H 1.48500 * 109.47218 * 329.99677 * 22 20 18 26 26 C 1.39974 * 119.77545 * 0.24611 * 8 7 6 27 27 C 1.37665 * 119.88295 * 359.47711 * 26 8 7 28 28 H 1.08996 * 109.47327 * 300.00308 * 1 2 3 29 29 H 1.09005 * 109.46868 * 60.00161 * 1 2 3 30 30 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47591 * 240.00160 * 2 1 3 32 32 H 1.08996 * 109.47008 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47154 * 299.99664 * 3 2 1 34 34 H 1.08996 * 109.47307 * 59.99680 * 3 2 1 35 35 H 1.07994 * 119.94101 * 359.97438 * 6 5 4 36 36 H 1.08007 * 120.05397 * 180.02562 * 7 6 5 37 37 H 1.08007 * 119.99735 * 316.48914 * 9 8 7 38 38 H 1.08005 * 120.00430 * 168.88720 * 10 9 8 39 39 H 0.97000 * 119.99637 * 0.27303 * 13 11 10 40 40 H 1.09003 * 109.47420 * 299.99967 * 14 13 11 41 41 H 1.09003 * 109.47302 * 59.99919 * 14 13 11 42 42 H 0.97008 * 119.99668 * 359.97438 * 17 15 14 43 43 H 0.96996 * 119.99788 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.05740 * 179.74404 * 26 8 7 45 45 H 1.07995 * 119.94549 * 180.27215 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2609 -1.1888 1.1119 6 6 3.9894 -1.1140 -0.0698 7 6 5.2623 -1.6346 -0.1305 8 6 5.8228 -2.2404 1.0000 9 6 7.1815 -2.7984 0.9406 10 6 8.0447 -2.5825 1.9554 11 6 7.7236 -1.6028 2.9928 12 8 6.7403 -0.8945 2.8776 13 7 8.5133 -1.4879 4.0790 14 6 8.1882 -0.5107 5.1209 15 6 9.2197 -0.5834 6.2172 16 8 10.1359 -1.3741 6.1363 17 7 9.1235 0.2294 7.2879 18 6 10.0615 0.1629 8.2855 19 1 10.8779 -0.5406 8.2131 20 6 9.9627 1.0012 9.3892 21 7 10.8616 0.9371 10.3457 22 14 8.5512 2.2184 9.5140 23 1 7.4056 1.5783 10.2092 24 1 8.9923 3.4108 10.2815 25 1 8.1336 2.6337 8.1508 26 6 5.0829 -2.3181 2.1857 27 6 3.8129 -1.7894 2.2377 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.5559 -0.6468 -0.9416 36 1 5.8276 -1.5757 -1.0489 37 1 7.4889 -3.3811 0.0848 38 1 8.9727 -3.1332 2.0015 39 1 9.2968 -2.0522 4.1708 40 1 8.1842 0.4910 4.6911 41 1 7.2040 -0.7331 5.5332 42 1 8.3905 0.8614 7.3528 43 1 10.7927 1.5226 11.1159 44 1 5.5093 -2.7882 3.0595 45 1 3.2429 -1.8449 3.1533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492918467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:19 Heat of formation + Delta-G solvation = -56.835514 kcal Electronic energy + Delta-G solvation = -27250.258387 eV Core-core repulsion = 23234.077469 eV Total energy + Delta-G solvation = -4016.180917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.50039 -39.73950 -38.49433 -37.58711 -34.57095 -33.99164 -33.66991 -32.97517 -31.80789 -30.99515 -29.28515 -27.82108 -27.49551 -24.74231 -23.84107 -22.88165 -21.88393 -20.83995 -19.77987 -19.33925 -18.58345 -18.38285 -17.34083 -16.19298 -15.84559 -15.77986 -15.47792 -15.33773 -15.15865 -14.77427 -14.51235 -14.24982 -13.92479 -13.83829 -13.63688 -13.32313 -13.20522 -13.00586 -12.91221 -12.67557 -12.47379 -12.44822 -12.19614 -12.16838 -12.02239 -11.56936 -11.46415 -11.24037 -11.08687 -10.74070 -10.64811 -10.07006 -9.77553 -9.70416 -9.67237 -9.01053 -8.77833 -8.63108 -8.31043 -7.77266 -6.41399 -3.93908 0.71943 1.43946 1.85900 2.99242 3.00473 3.03933 3.11900 3.39205 3.42367 3.57361 3.82448 4.03076 4.40027 4.54354 4.55247 4.63472 4.70261 4.77612 4.86589 4.94200 5.13500 5.15801 5.17860 5.28024 5.30245 5.36845 5.39417 5.54166 5.64209 5.68937 5.72705 5.78109 5.82014 5.82910 5.93473 5.96726 6.14205 6.28388 6.38888 6.59595 6.61718 6.74536 7.35678 7.43622 7.79349 8.00009 8.40058 8.47707 8.81099 9.29271 9.62913 10.70751 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.002399 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.174764 B =11666.812568 C =13367.344598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.312 6.312 5 C 0.143 3.857 6 C -0.228 4.228 7 C -0.059 4.059 8 C -0.109 4.109 9 C -0.022 4.022 10 C -0.210 4.210 11 C 0.535 3.465 12 O -0.537 6.537 13 N -0.702 5.702 14 C 0.107 3.893 15 C 0.437 3.563 16 O -0.579 6.579 17 N -0.576 5.576 18 C -0.310 4.310 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.267 1.267 26 C 0.007 3.993 27 C -0.164 4.164 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.412 0.588 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.374 0.626 43 H 0.276 0.724 44 H 0.120 0.880 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.740 -3.718 -23.497 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 C -0.238 4.238 4 O -0.226 6.226 5 C 0.098 3.902 6 C -0.246 4.246 7 C -0.078 4.078 8 C -0.110 4.110 9 C -0.042 4.042 10 C -0.231 4.231 11 C 0.324 3.676 12 O -0.417 6.417 13 N -0.355 5.355 14 C -0.021 4.021 15 C 0.223 3.777 16 O -0.464 6.464 17 N -0.214 5.214 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.012 4.012 27 C -0.182 4.182 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.250 0.750 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.207 0.793 43 H 0.086 0.914 44 H 0.138 0.862 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.854 -3.638 -23.196 29.496 hybrid contribution -0.358 1.011 0.240 1.099 sum -18.211 -2.627 -22.956 29.420 Atomic orbital electron populations 1.21845 0.92538 1.03099 1.03044 1.22426 0.95279 0.92658 0.87681 1.22368 1.02477 0.95915 1.03029 1.86085 1.28176 1.68909 1.39413 1.19104 0.83965 0.93086 0.94067 1.20979 0.96937 1.09111 0.97597 1.20892 0.93946 0.95737 0.97187 1.18739 0.94109 1.03791 0.94340 1.22275 0.91414 0.94363 0.96123 1.22990 1.02121 1.01094 0.96872 1.18418 0.82935 0.84448 0.81832 1.90879 1.26838 1.45971 1.78012 1.45713 1.30207 1.39794 1.19821 1.20949 0.98522 0.93722 0.88885 1.19665 0.88443 0.85181 0.84364 1.90540 1.36067 1.40533 1.79215 1.42128 1.25957 1.34236 1.19079 1.19440 1.06379 1.21483 0.96553 0.86082 1.25071 0.97559 0.97773 0.95524 1.69616 1.34026 1.38549 1.09104 0.86674 0.82425 0.81579 0.78834 1.19369 1.19970 1.19244 1.20875 0.91397 0.93474 0.95409 1.20221 0.96505 1.04335 0.97186 0.91429 0.90593 0.91686 0.90867 0.91648 0.91145 0.91403 0.85712 0.86079 0.84886 0.84825 0.75021 0.89790 0.89752 0.79253 0.91381 0.86160 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.56 37.16 0.36 -0.57 16 2 C 0.08 0.62 2.87 -26.73 -0.08 0.55 16 3 C -0.18 -1.41 9.26 37.16 0.34 -1.06 16 4 O -0.31 -3.65 9.80 -18.91 -0.19 -3.84 16 5 C 0.14 1.78 6.55 -39.00 -0.26 1.53 16 6 C -0.23 -2.49 8.32 -39.50 -0.33 -2.82 16 7 C -0.06 -0.64 9.79 -39.14 -0.38 -1.03 16 8 C -0.11 -1.32 4.53 -105.05 -0.48 -1.79 16 9 C -0.02 -0.22 9.80 -37.19 -0.36 -0.58 16 10 C -0.21 -2.33 9.91 -37.52 -0.37 -2.70 16 11 C 0.54 7.87 6.78 -13.04 -0.09 7.78 16 12 O -0.54 -9.13 12.17 5.17 0.06 -9.07 16 13 N -0.70 -11.01 5.52 -62.94 -0.35 -11.36 16 14 C 0.11 1.85 6.15 -5.20 -0.03 1.82 16 15 C 0.44 9.62 7.85 -10.99 -0.09 9.53 16 16 O -0.58 -14.60 15.24 5.54 0.08 -14.52 16 17 N -0.58 -13.46 5.09 -10.96 -0.06 -13.51 16 18 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 19 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 20 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 21 N -0.87 -25.00 13.96 55.50 0.77 -24.23 16 22 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 26 C 0.01 0.09 6.59 -39.14 -0.26 -0.17 16 27 C -0.16 -2.17 9.97 -39.50 -0.39 -2.56 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.53 5.97 -51.93 -0.31 0.22 16 32 H 0.06 0.60 7.33 -51.93 -0.38 0.21 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.13 1.09 5.67 -52.49 -0.30 0.79 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.41 6.38 7.42 -40.82 -0.30 6.07 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 43 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.12 1.59 7.03 -52.49 -0.37 1.23 16 45 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -33.33 377.92 -7.45 -40.78 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -6.10 Total: 15.35 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -2.66 Total: 0.31 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.37 Total: -49.10 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.04 Total: -27.43 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.33 -7.45 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492918467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.059 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds