Wall clock time and date at job start Tue Mar 31 2020 16:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 O 1.42902 * 109.47354 * 119.99720 * 2 1 3 5 5 C 1.35735 * 117.00200 * 156.94288 * 4 2 1 6 6 C 1.39023 * 119.88604 * 356.35843 * 5 4 2 7 7 C 1.37663 * 120.10949 * 179.97438 * 6 5 4 8 8 C 1.39967 * 119.88835 * 0.02562 * 7 6 5 9 9 C 1.47000 * 120.11354 * 179.97438 * 8 7 6 10 10 C 1.34970 * 120.00432 * 136.48680 * 9 8 7 11 11 C 1.46257 * 119.99992 * 348.89041 * 10 9 8 12 12 O 1.21721 * 120.00091 * 353.21041 * 11 10 9 13 13 N 1.34783 * 120.00341 * 172.93684 * 11 10 9 14 14 C 1.46493 * 120.00136 * 180.27516 * 13 11 10 15 15 C 1.50699 * 109.47413 * 179.97438 * 14 13 11 16 16 O 1.21299 * 119.99606 * 359.97438 * 15 14 13 17 17 N 1.34768 * 120.00621 * 180.02562 * 15 14 13 18 18 C 1.37089 * 120.00352 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00105 * 0.02562 * 18 17 15 20 20 C 1.38959 * 120.00329 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00270 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99475 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47013 * 90.00115 * 22 20 18 24 24 H 1.48507 * 109.46629 * 209.99684 * 22 20 18 25 25 H 1.48500 * 109.47218 * 329.99677 * 22 20 18 26 26 C 1.39974 * 119.77545 * 0.24611 * 8 7 6 27 27 C 1.37665 * 119.88295 * 359.47711 * 26 8 7 28 28 H 1.08996 * 109.47327 * 300.00308 * 1 2 3 29 29 H 1.09005 * 109.46868 * 60.00161 * 1 2 3 30 30 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47591 * 240.00160 * 2 1 3 32 32 H 1.08996 * 109.47008 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47154 * 299.99664 * 3 2 1 34 34 H 1.08996 * 109.47307 * 59.99680 * 3 2 1 35 35 H 1.07994 * 119.94101 * 359.97438 * 6 5 4 36 36 H 1.08007 * 120.05397 * 180.02562 * 7 6 5 37 37 H 1.08007 * 119.99735 * 316.48914 * 9 8 7 38 38 H 1.08005 * 120.00430 * 168.88720 * 10 9 8 39 39 H 0.97000 * 119.99637 * 0.27303 * 13 11 10 40 40 H 1.09003 * 109.47420 * 299.99967 * 14 13 11 41 41 H 1.09003 * 109.47302 * 59.99919 * 14 13 11 42 42 H 0.97008 * 119.99668 * 359.97438 * 17 15 14 43 43 H 0.96996 * 119.99788 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.05740 * 179.74404 * 26 8 7 45 45 H 1.07995 * 119.94549 * 180.27215 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2609 -1.1888 1.1119 6 6 3.9894 -1.1140 -0.0698 7 6 5.2623 -1.6346 -0.1305 8 6 5.8228 -2.2404 1.0000 9 6 7.1815 -2.7984 0.9406 10 6 8.0447 -2.5825 1.9554 11 6 7.7236 -1.6028 2.9928 12 8 6.7403 -0.8945 2.8776 13 7 8.5133 -1.4879 4.0790 14 6 8.1882 -0.5107 5.1209 15 6 9.2197 -0.5834 6.2172 16 8 10.1359 -1.3741 6.1363 17 7 9.1235 0.2294 7.2879 18 6 10.0615 0.1629 8.2855 19 1 10.8779 -0.5406 8.2131 20 6 9.9627 1.0012 9.3892 21 7 10.8616 0.9371 10.3457 22 14 8.5512 2.2184 9.5140 23 1 7.4056 1.5783 10.2092 24 1 8.9923 3.4108 10.2815 25 1 8.1336 2.6337 8.1508 26 6 5.0829 -2.3181 2.1857 27 6 3.8129 -1.7894 2.2377 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.5559 -0.6468 -0.9416 36 1 5.8276 -1.5757 -1.0489 37 1 7.4889 -3.3811 0.0848 38 1 8.9727 -3.1332 2.0015 39 1 9.2968 -2.0522 4.1708 40 1 8.1842 0.4910 4.6911 41 1 7.2040 -0.7331 5.5332 42 1 8.3905 0.8614 7.3528 43 1 10.7927 1.5226 11.1159 44 1 5.5093 -2.7882 3.0595 45 1 3.2429 -1.8449 3.1533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492918467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:18 Heat of formation + Delta-G solvation = -80.030741 kcal Electronic energy + Delta-G solvation = -27251.264207 eV Core-core repulsion = 23234.077469 eV Total energy + Delta-G solvation = -4017.186738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.41331 -40.91548 -40.10292 -38.54098 -36.29648 -35.30736 -34.69464 -33.85841 -33.71740 -31.86341 -30.37259 -29.05966 -28.13160 -26.46026 -24.82148 -23.81573 -22.79949 -21.70298 -21.47946 -20.77093 -20.12041 -19.30904 -18.45543 -17.41461 -17.21832 -16.78905 -16.76692 -16.62551 -16.40069 -15.98236 -15.71581 -15.25607 -15.03765 -14.96010 -14.79588 -14.54310 -14.29930 -14.17065 -14.04679 -13.80181 -13.63902 -13.55108 -13.22631 -13.09556 -12.98297 -12.82063 -12.46811 -12.38298 -12.17443 -12.02405 -11.80410 -11.60235 -11.47041 -10.84590 -10.67199 -10.52706 -10.34888 -10.13417 -9.66932 -8.65568 -8.47374 -6.09163 -0.15655 0.54854 0.97153 1.28924 1.31900 1.41525 1.77096 2.14206 2.18838 2.27614 2.38523 2.90158 2.94186 3.08800 3.80453 3.83153 3.91411 3.92717 3.96525 4.01975 4.08511 4.18362 4.37311 4.40762 4.43164 4.45258 4.62228 4.67463 4.71116 4.80840 4.86725 4.94045 5.08729 5.12780 5.19961 5.25324 5.29971 5.31279 5.42967 5.47737 5.53593 5.74528 5.86573 5.90089 6.46705 6.54806 6.61356 6.76584 7.23461 7.31698 7.76233 8.69052 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.002399 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.174764 B =11666.812568 C =13367.344598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 C -0.177 4.177 4 O -0.331 6.331 5 C 0.132 3.868 6 C -0.228 4.228 7 C -0.059 4.059 8 C -0.127 4.127 9 C -0.001 4.001 10 C -0.226 4.226 11 C 0.533 3.467 12 O -0.563 6.563 13 N -0.708 5.708 14 C 0.121 3.879 15 C 0.445 3.555 16 O -0.614 6.614 17 N -0.579 5.579 18 C -0.331 4.331 19 H 0.064 0.936 20 C -0.008 4.008 21 N -0.925 5.925 22 Si 0.958 3.042 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.235 1.235 26 C -0.007 4.007 27 C -0.188 4.188 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.176 0.824 38 H 0.160 0.840 39 H 0.412 0.588 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.391 0.609 43 H 0.281 0.719 44 H 0.110 0.890 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.883 -2.766 -26.624 33.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 C -0.235 4.235 4 O -0.245 6.245 5 C 0.087 3.913 6 C -0.246 4.246 7 C -0.077 4.077 8 C -0.127 4.127 9 C -0.021 4.021 10 C -0.246 4.246 11 C 0.324 3.676 12 O -0.444 6.444 13 N -0.361 5.361 14 C -0.007 4.007 15 C 0.232 3.768 16 O -0.500 6.500 17 N -0.219 5.219 18 C -0.460 4.460 19 H 0.082 0.918 20 C -0.208 4.208 21 N -0.564 5.564 22 Si 0.778 3.222 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.158 1.158 26 C -0.025 4.025 27 C -0.207 4.207 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.193 0.807 38 H 0.177 0.823 39 H 0.250 0.750 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.227 0.773 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.009 -2.699 -26.354 33.199 hybrid contribution 0.296 0.629 1.114 1.313 sum -19.713 -2.070 -25.240 32.093 Atomic orbital electron populations 1.21876 0.91104 1.03323 1.03939 1.22748 0.96428 0.92656 0.87064 1.22357 1.01473 0.95843 1.03804 1.86072 1.27909 1.69172 1.41380 1.19245 0.84532 0.93161 0.94394 1.21278 0.97003 1.08600 0.97720 1.21285 0.93992 0.94499 0.97895 1.19057 0.95160 1.04253 0.94235 1.22674 0.89829 0.92996 0.96576 1.23040 1.03912 1.01519 0.96163 1.19021 0.82051 0.84690 0.81803 1.90877 1.27771 1.47216 1.78538 1.45779 1.30671 1.39707 1.19980 1.20799 0.97059 0.95170 0.87692 1.20546 0.88363 0.83350 0.84528 1.90526 1.37798 1.41618 1.80016 1.41949 1.25877 1.35355 1.18706 1.19031 1.06568 1.21592 0.98819 0.91788 1.26058 1.00808 0.99668 0.94270 1.69775 1.36613 1.40001 1.10047 0.85455 0.78070 0.78103 0.80555 1.18099 1.19685 1.15849 1.20886 0.91705 0.94093 0.95851 1.20333 0.97045 1.05622 0.97696 0.92130 0.88076 0.91812 0.89559 0.93096 0.88585 0.92429 0.83435 0.82986 0.80722 0.82275 0.74976 0.88339 0.88165 0.77320 0.90895 0.87220 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.56 71.98 0.69 -0.87 16 2 C 0.07 0.98 2.87 30.59 0.09 1.07 16 3 C -0.18 -2.46 9.26 71.98 0.67 -1.80 16 4 O -0.33 -7.60 9.80 -90.59 -0.89 -8.49 16 5 C 0.13 3.23 6.55 22.65 0.15 3.37 16 6 C -0.23 -4.51 8.32 22.32 0.19 -4.33 16 7 C -0.06 -1.11 9.79 22.55 0.22 -0.89 16 8 C -0.13 -2.79 4.53 -20.14 -0.09 -2.89 16 9 C 0.00 -0.02 9.80 23.82 0.23 0.21 16 10 C -0.23 -4.48 9.91 23.60 0.23 -4.25 16 11 C 0.53 15.02 6.78 86.33 0.59 15.61 16 12 O -0.56 -18.60 12.17 -4.42 -0.05 -18.65 16 13 N -0.71 -21.60 5.52 -471.23 -2.60 -24.20 16 14 C 0.12 4.04 6.15 85.63 0.53 4.56 16 15 C 0.44 19.65 7.85 87.66 0.69 20.34 16 16 O -0.61 -31.85 15.24 -3.09 -0.05 -31.90 16 17 N -0.58 -27.06 5.09 -306.99 -1.56 -28.62 16 18 C -0.33 -18.98 10.16 84.04 0.85 -18.12 16 19 H 0.06 4.32 7.39 -2.91 -0.02 4.30 16 20 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 21 N -0.92 -54.64 13.96 21.67 0.30 -54.34 16 22 Si 0.96 38.70 27.74 68.60 1.90 40.60 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.24 -8.20 6.52 99.48 0.65 -7.55 16 26 C -0.01 -0.18 6.59 22.56 0.15 -0.03 16 27 C -0.19 -5.08 9.97 22.32 0.22 -4.86 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.03 5.97 -2.39 -0.01 1.02 16 32 H 0.05 0.85 7.33 -2.39 -0.02 0.83 16 33 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.15 2.13 5.67 -2.91 -0.02 2.11 16 36 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.41 12.61 7.42 -92.71 -0.69 11.92 16 40 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.39 15.48 5.76 -92.70 -0.53 14.94 16 43 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.11 2.98 7.03 -2.91 -0.02 2.96 16 45 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -77.08 377.92 2.67 -74.42 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -0.25 Total: 44.03 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.87 Total: 7.15 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -3.86 Total: -107.16 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -0.99 Total: -59.04 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.60 kcal Total: -77.08 2.67 -74.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492918467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.614 kcal (2) G-P(sol) polarization free energy of solvation -77.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds