Wall clock time and date at job start Tue Mar 31 2020 17:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.46286 * 2 1 4 4 O 1.45709 * 110.63702 * 237.29179 * 2 1 3 5 5 C 1.33768 * 109.47377 * 241.30890 * 4 2 1 6 6 O 1.21511 * 123.07085 * 179.97438 * 5 4 2 7 7 N 1.34320 * 113.90861 * 0.08650 * 5 4 2 8 8 C 1.47096 * 108.70204 * 359.86534 * 7 5 4 9 9 H 1.08997 * 110.56685 * 118.77052 * 8 7 5 10 10 C 1.50698 * 110.56355 * 241.47913 * 8 7 5 11 11 O 1.21287 * 120.00053 * 16.55311 * 10 8 7 12 12 N 1.34774 * 120.00226 * 196.55498 * 10 8 7 13 13 C 1.46496 * 120.00435 * 179.97438 * 12 10 8 14 14 H 1.09004 * 109.46715 * 35.00354 * 13 12 10 15 15 C 1.53000 * 109.47317 * 154.99919 * 13 12 10 16 16 C 1.53001 * 109.47355 * 295.00418 * 15 13 12 17 17 C 1.50694 * 109.47168 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99854 * 179.72538 * 19 17 16 22 22 H 1.48504 * 109.47032 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46816 * 120.00323 * 21 19 17 24 24 H 1.48495 * 109.46630 * 240.00111 * 21 19 17 25 25 C 1.50703 * 109.47248 * 275.00323 * 13 12 10 26 26 C 1.38228 * 119.99819 * 319.72062 * 25 13 12 27 27 C 1.38241 * 120.00074 * 179.78932 * 26 25 13 28 28 C 1.38237 * 119.99529 * 0.44136 * 27 26 25 29 29 C 1.38233 * 120.00295 * 359.81849 * 28 27 26 30 30 C 1.38234 * 119.99881 * 140.00105 * 25 13 12 31 31 H 1.09003 * 109.46803 * 297.36314 * 1 2 3 32 32 H 1.08997 * 109.47189 * 57.36420 * 1 2 3 33 33 H 1.09004 * 109.46895 * 177.36877 * 1 2 3 34 34 H 0.96999 * 125.74322 * 179.90281 * 7 5 4 35 35 H 0.97007 * 119.99542 * 359.97438 * 12 10 8 36 36 H 1.09000 * 109.46966 * 175.00105 * 15 13 12 37 37 H 1.09002 * 109.46807 * 55.00127 * 15 13 12 38 38 H 1.08998 * 109.46837 * 59.99832 * 16 15 13 39 39 H 1.09002 * 109.46926 * 299.99636 * 16 15 13 40 40 H 0.97001 * 119.99646 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.00067 * 0.02562 * 26 25 13 42 42 H 1.08000 * 120.00057 * 180.28019 * 27 26 25 43 43 H 1.07999 * 119.99728 * 179.83194 * 28 27 26 44 44 H 1.07998 * 120.00639 * 179.97438 * 29 28 27 45 45 H 1.08003 * 120.00040 * 359.97438 * 30 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0436 -0.7368 -1.1474 5 6 2.7674 -1.7779 -0.7212 6 8 3.3116 -2.5602 -1.4751 7 7 2.8363 -1.8820 0.6162 8 6 2.0702 -0.7783 1.2153 9 1 1.2487 -1.1654 1.8181 10 6 2.9689 0.0987 2.0485 11 8 4.1726 0.0342 1.9149 12 7 2.4350 0.9546 2.9423 13 6 3.3086 1.8067 3.7527 14 1 4.1767 2.1018 3.1633 15 6 2.5403 3.0557 4.1896 16 6 2.1862 3.8931 2.9590 17 6 1.4290 5.1229 3.3892 18 1 1.2207 5.2904 4.4356 19 6 1.0021 6.0345 2.4469 20 7 1.2554 5.8304 1.1726 21 14 0.0568 7.5551 2.9795 22 1 -0.1016 7.5475 4.4560 23 1 0.8034 8.7712 2.5684 24 1 -1.2821 7.5555 2.3374 25 6 3.7637 1.0452 4.9710 26 6 2.8768 0.2278 5.6463 27 6 3.2954 -0.4742 6.7612 28 6 4.5985 -0.3516 7.2060 29 6 5.4840 0.4699 6.5338 30 6 5.0665 1.1685 5.4163 31 1 -0.3633 0.4724 0.9127 32 1 -0.3633 0.5542 -0.8654 33 1 -0.3633 -1.0266 -0.0472 34 1 3.3123 -2.5698 1.1073 35 1 1.4722 1.0064 3.0489 36 1 3.1601 3.6458 4.8647 37 1 1.6255 2.7586 4.7024 38 1 1.5665 3.3029 2.2840 39 1 3.1011 4.1902 2.4462 40 1 0.9553 6.4719 0.5097 41 1 1.8578 0.1347 5.3007 42 1 2.6037 -1.1163 7.2862 43 1 4.9248 -0.8979 8.0786 44 1 6.5019 0.5661 6.8815 45 1 5.7583 1.8104 4.8910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496706517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:45 Heat of formation + Delta-G solvation = -94.204320 kcal Electronic energy + Delta-G solvation = -28807.667437 eV Core-core repulsion = 24789.866086 eV Total energy + Delta-G solvation = -4017.801350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95946 -39.98679 -38.74947 -37.31675 -35.97529 -34.73230 -33.37006 -32.42361 -31.50297 -30.81193 -30.46846 -27.67048 -26.26114 -23.80893 -23.14897 -22.57936 -22.40816 -21.38620 -20.73582 -20.18304 -18.29790 -17.64332 -17.28320 -16.89720 -16.39890 -16.17099 -15.67585 -15.33359 -15.04894 -14.70958 -14.56587 -14.52777 -14.39592 -13.83871 -13.50947 -13.42406 -13.31392 -13.18723 -12.86320 -12.68072 -12.33118 -12.21779 -11.89381 -11.84778 -11.26472 -11.07529 -11.06547 -10.90104 -10.81661 -10.76340 -10.62504 -10.41356 -10.05247 -9.73321 -9.36908 -9.27211 -9.01565 -8.85918 -8.56866 -8.47480 -6.12598 -4.15856 1.39509 1.45539 2.35889 2.43438 2.64123 3.00277 3.22544 3.31600 3.34252 3.45508 3.85432 3.86638 4.34026 4.35415 4.42259 4.72309 4.87118 4.92071 4.95065 5.01913 5.07910 5.15938 5.23873 5.43117 5.45859 5.53099 5.56708 5.64873 5.72537 5.85049 5.98864 6.06612 6.15785 6.40582 6.47215 6.53727 6.57417 6.59644 6.78038 6.81673 7.04931 7.10031 7.46576 7.50173 7.60673 7.85495 7.95771 8.13738 8.26445 8.91073 9.49604 10.98110 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.006996 B = 0.004766 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4001.121779 B = 5873.024484 C = 9165.912674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.080 3.920 3 H 0.127 0.873 4 O -0.318 6.318 5 C 0.652 3.348 6 O -0.523 6.523 7 N -0.711 5.711 8 C 0.080 3.920 9 H 0.125 0.875 10 C 0.504 3.496 11 O -0.520 6.520 12 N -0.703 5.703 13 C 0.182 3.818 14 H 0.096 0.904 15 C -0.113 4.113 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.081 4.081 26 C -0.109 4.109 27 C -0.124 4.124 28 C -0.129 4.129 29 C -0.120 4.120 30 C -0.105 4.105 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.438 0.562 35 H 0.404 0.596 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.018 0.982 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 -14.092 7.716 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.145 0.855 4 O -0.228 6.228 5 C 0.405 3.595 6 O -0.408 6.408 7 N -0.384 5.384 8 C -0.031 4.031 9 H 0.142 0.858 10 C 0.287 3.713 11 O -0.395 6.395 12 N -0.354 5.354 13 C 0.078 3.922 14 H 0.114 0.886 15 C -0.151 4.151 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.082 4.082 26 C -0.127 4.127 27 C -0.142 4.142 28 C -0.147 4.147 29 C -0.138 4.138 30 C -0.124 4.124 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.281 0.719 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.038 -14.260 6.692 15.752 hybrid contribution -0.730 0.746 0.783 1.304 sum -0.691 -13.514 7.475 15.459 Atomic orbital electron populations 1.22158 0.90708 1.03764 1.05148 1.23886 0.96979 0.96960 0.79779 0.85491 1.87343 1.63687 1.38957 1.32831 1.18523 0.78024 0.80627 0.82364 1.91065 1.49058 1.42712 1.57974 1.45704 1.56430 1.30227 1.05997 1.22429 0.95056 0.88997 0.96595 0.85786 1.20428 0.89173 0.81162 0.80580 1.90760 1.14584 1.67173 1.66941 1.45966 1.10787 1.39743 1.38881 1.20192 0.94509 0.89321 0.88185 0.88637 1.22002 0.98605 0.93076 1.01417 1.19104 0.96798 0.93914 0.91450 1.21232 1.35612 1.06053 0.93327 0.92617 1.24995 0.96110 0.98134 0.94926 1.69957 1.46502 1.36306 1.00336 0.86581 0.79719 0.83193 0.78784 1.19747 1.21001 1.20991 1.20352 0.93818 0.97095 0.96966 1.20896 0.99255 0.97021 0.95511 1.21080 0.96112 0.99959 0.97019 1.21081 0.94010 0.99545 1.00043 1.21100 0.99510 0.97300 0.95915 1.21048 0.95416 0.99292 0.96633 0.89048 0.89742 0.91268 0.71858 0.76139 0.91293 0.92375 0.96362 0.96517 0.92944 0.86429 0.86459 0.86548 0.86302 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.46 37.16 0.35 -0.95 16 2 C 0.08 0.89 4.13 -26.16 -0.11 0.78 16 3 H 0.13 1.58 7.72 -51.93 -0.40 1.18 16 4 O -0.32 -4.61 10.80 -37.82 -0.41 -5.02 16 5 C 0.65 9.94 9.16 53.85 0.49 10.43 16 6 O -0.52 -9.77 18.04 -19.12 -0.34 -10.12 16 7 N -0.71 -8.36 5.67 -59.27 -0.34 -8.70 16 8 C 0.08 0.81 3.81 -68.19 -0.26 0.55 16 9 H 0.12 0.77 7.73 -51.93 -0.40 0.37 16 10 C 0.50 6.66 6.90 -10.99 -0.08 6.59 16 11 O -0.52 -9.05 16.24 5.55 0.09 -8.96 16 12 N -0.70 -8.71 3.78 -54.93 -0.21 -8.91 16 13 C 0.18 2.69 2.17 -69.08 -0.15 2.54 16 14 H 0.10 1.64 7.44 -51.93 -0.39 1.25 16 15 C -0.11 -1.93 4.67 -26.73 -0.12 -2.05 16 16 C 0.02 0.54 4.86 -27.89 -0.14 0.41 16 17 C -0.52 -13.37 9.11 -34.44 -0.31 -13.69 16 18 H 0.06 1.40 7.74 -52.49 -0.41 0.99 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 21 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.08 -1.10 4.91 -104.63 -0.51 -1.62 16 26 C -0.11 -1.29 9.32 -39.58 -0.37 -1.66 16 27 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 28 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 29 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 30 C -0.11 -1.41 9.67 -39.58 -0.38 -1.79 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.44 4.46 8.96 -40.82 -0.37 4.10 16 35 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.41 7.75 -51.93 -0.40 0.00 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.12 1.19 7.73 -52.48 -0.41 0.79 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.12 1.57 8.04 -52.48 -0.42 1.15 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -34.11 385.51 -9.04 -43.15 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.48 Total: 5.90 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.88 Total: -4.30 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.19 Total: -41.74 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.66 Total: -24.10 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.11 -9.04 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496706517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.053 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds