Wall clock time and date at job start Tue Mar 31 2020 17:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.46286 * 2 1 4 4 O 1.45709 * 110.63702 * 237.29179 * 2 1 3 5 5 C 1.33768 * 109.47377 * 241.30890 * 4 2 1 6 6 O 1.21511 * 123.07085 * 179.97438 * 5 4 2 7 7 N 1.34320 * 113.90861 * 0.08650 * 5 4 2 8 8 C 1.47096 * 108.70204 * 359.86534 * 7 5 4 9 9 H 1.08997 * 110.56685 * 118.77052 * 8 7 5 10 10 C 1.50698 * 110.56355 * 241.47913 * 8 7 5 11 11 O 1.21287 * 120.00053 * 16.55311 * 10 8 7 12 12 N 1.34774 * 120.00226 * 196.55498 * 10 8 7 13 13 C 1.46496 * 120.00435 * 179.97438 * 12 10 8 14 14 H 1.09004 * 109.46715 * 35.00354 * 13 12 10 15 15 C 1.53000 * 109.47317 * 154.99919 * 13 12 10 16 16 C 1.53001 * 109.47355 * 295.00418 * 15 13 12 17 17 C 1.50694 * 109.47168 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99854 * 179.72538 * 19 17 16 22 22 H 1.48504 * 109.47032 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46816 * 120.00323 * 21 19 17 24 24 H 1.48495 * 109.46630 * 240.00111 * 21 19 17 25 25 C 1.50703 * 109.47248 * 275.00323 * 13 12 10 26 26 C 1.38228 * 119.99819 * 319.72062 * 25 13 12 27 27 C 1.38241 * 120.00074 * 179.78932 * 26 25 13 28 28 C 1.38237 * 119.99529 * 0.44136 * 27 26 25 29 29 C 1.38233 * 120.00295 * 359.81849 * 28 27 26 30 30 C 1.38234 * 119.99881 * 140.00105 * 25 13 12 31 31 H 1.09003 * 109.46803 * 297.36314 * 1 2 3 32 32 H 1.08997 * 109.47189 * 57.36420 * 1 2 3 33 33 H 1.09004 * 109.46895 * 177.36877 * 1 2 3 34 34 H 0.96999 * 125.74322 * 179.90281 * 7 5 4 35 35 H 0.97007 * 119.99542 * 359.97438 * 12 10 8 36 36 H 1.09000 * 109.46966 * 175.00105 * 15 13 12 37 37 H 1.09002 * 109.46807 * 55.00127 * 15 13 12 38 38 H 1.08998 * 109.46837 * 59.99832 * 16 15 13 39 39 H 1.09002 * 109.46926 * 299.99636 * 16 15 13 40 40 H 0.97001 * 119.99646 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.00067 * 0.02562 * 26 25 13 42 42 H 1.08000 * 120.00057 * 180.28019 * 27 26 25 43 43 H 1.07999 * 119.99728 * 179.83194 * 28 27 26 44 44 H 1.07998 * 120.00639 * 179.97438 * 29 28 27 45 45 H 1.08003 * 120.00040 * 359.97438 * 30 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0436 -0.7368 -1.1474 5 6 2.7674 -1.7779 -0.7212 6 8 3.3116 -2.5602 -1.4751 7 7 2.8363 -1.8820 0.6162 8 6 2.0702 -0.7783 1.2153 9 1 1.2487 -1.1654 1.8181 10 6 2.9689 0.0987 2.0485 11 8 4.1726 0.0342 1.9149 12 7 2.4350 0.9546 2.9423 13 6 3.3086 1.8067 3.7527 14 1 4.1767 2.1018 3.1633 15 6 2.5403 3.0557 4.1896 16 6 2.1862 3.8931 2.9590 17 6 1.4290 5.1229 3.3892 18 1 1.2207 5.2904 4.4356 19 6 1.0021 6.0345 2.4469 20 7 1.2554 5.8304 1.1726 21 14 0.0568 7.5551 2.9795 22 1 -0.1016 7.5475 4.4560 23 1 0.8034 8.7712 2.5684 24 1 -1.2821 7.5555 2.3374 25 6 3.7637 1.0452 4.9710 26 6 2.8768 0.2278 5.6463 27 6 3.2954 -0.4742 6.7612 28 6 4.5985 -0.3516 7.2060 29 6 5.4840 0.4699 6.5338 30 6 5.0665 1.1685 5.4163 31 1 -0.3633 0.4724 0.9127 32 1 -0.3633 0.5542 -0.8654 33 1 -0.3633 -1.0266 -0.0472 34 1 3.3123 -2.5698 1.1073 35 1 1.4722 1.0064 3.0489 36 1 3.1601 3.6458 4.8647 37 1 1.6255 2.7586 4.7024 38 1 1.5665 3.3029 2.2840 39 1 3.1011 4.1902 2.4462 40 1 0.9553 6.4719 0.5097 41 1 1.8578 0.1347 5.3007 42 1 2.6037 -1.1163 7.2862 43 1 4.9248 -0.8979 8.0786 44 1 6.5019 0.5661 6.8815 45 1 5.7583 1.8104 4.8910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496706517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:44 Heat of formation + Delta-G solvation = -117.578052 kcal Electronic energy + Delta-G solvation = -28808.680998 eV Core-core repulsion = 24789.866086 eV Total energy + Delta-G solvation = -4018.814912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.02576 -41.08079 -39.76325 -38.53202 -37.22760 -35.80537 -35.14804 -33.53632 -32.62133 -31.83639 -31.67425 -28.79277 -27.62102 -25.29550 -24.12661 -23.51456 -23.45415 -22.60529 -22.05137 -21.34128 -19.38694 -18.68822 -18.47134 -18.33180 -17.70384 -17.32265 -16.84841 -16.54822 -16.23141 -16.09970 -15.71232 -15.55162 -15.40229 -15.02888 -14.68414 -14.56007 -14.44143 -14.20274 -14.02610 -13.84166 -13.67274 -13.35411 -13.00069 -12.87464 -12.73711 -12.51675 -12.43401 -12.12843 -12.04178 -11.92941 -11.88691 -11.75840 -11.47537 -11.41080 -11.15872 -10.52204 -10.42351 -10.18374 -9.75513 -9.55792 -8.15317 -6.24754 0.47189 0.56223 1.29067 1.33477 1.42148 1.45503 1.55762 1.56679 1.95419 2.44322 2.48168 2.93639 2.94742 3.19449 3.40524 3.56591 3.80659 3.88071 3.99630 4.09357 4.19055 4.25952 4.26885 4.33421 4.38525 4.68416 4.69228 4.77712 4.82042 4.86701 5.01440 5.12677 5.19118 5.22133 5.24274 5.33703 5.57370 5.61635 5.62257 5.66413 5.71963 5.83218 5.90126 6.01854 6.17067 6.28904 6.43983 6.85501 6.92627 7.10783 7.44797 8.95427 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.006996 B = 0.004766 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4001.121779 B = 5873.024484 C = 9165.912674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.075 3.925 3 H 0.106 0.894 4 O -0.336 6.336 5 C 0.648 3.352 6 O -0.567 6.567 7 N -0.697 5.697 8 C 0.092 3.908 9 H 0.181 0.819 10 C 0.504 3.496 11 O -0.567 6.567 12 N -0.691 5.691 13 C 0.195 3.805 14 H 0.061 0.939 15 C -0.095 4.095 16 C 0.030 3.970 17 C -0.536 4.536 18 H 0.060 0.940 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.953 3.047 22 H -0.262 1.262 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.098 4.098 26 C -0.112 4.112 27 C -0.123 4.123 28 C -0.128 4.128 29 C -0.128 4.128 30 C -0.131 4.131 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.446 0.554 35 H 0.419 0.581 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.016 0.984 39 H -0.024 1.024 40 H 0.261 0.739 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.135 0.865 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 -15.272 10.514 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.019 3.981 3 H 0.124 0.876 4 O -0.246 6.246 5 C 0.402 3.598 6 O -0.455 6.455 7 N -0.369 5.369 8 C -0.018 4.018 9 H 0.198 0.802 10 C 0.288 3.712 11 O -0.445 6.445 12 N -0.343 5.343 13 C 0.090 3.910 14 H 0.079 0.921 15 C -0.133 4.133 16 C -0.007 4.007 17 C -0.574 4.574 18 H 0.078 0.922 19 C -0.191 4.191 20 N -0.569 5.569 21 Si 0.779 3.221 22 H -0.186 1.186 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.100 4.100 26 C -0.130 4.130 27 C -0.141 4.141 28 C -0.146 4.146 29 C -0.146 4.146 30 C -0.150 4.150 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.291 0.709 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.034 0.966 39 H -0.005 1.005 40 H 0.070 0.930 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.153 0.847 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.303 -15.427 9.543 18.286 hybrid contribution 0.042 1.165 -0.035 1.166 sum -2.261 -14.262 9.508 17.290 Atomic orbital electron populations 1.22206 0.87740 1.05197 1.06039 1.24116 0.99098 0.95701 0.79167 0.87586 1.87320 1.63688 1.38916 1.34633 1.18661 0.77759 0.80379 0.83039 1.91020 1.50848 1.44381 1.59245 1.45649 1.55987 1.30364 1.04903 1.22639 0.95220 0.87813 0.96081 0.80203 1.20949 0.88918 0.81048 0.80290 1.90750 1.16876 1.68600 1.68293 1.45817 1.11345 1.38855 1.38286 1.19752 0.93284 0.89191 0.88805 0.92129 1.21726 0.99577 0.93212 0.98800 1.18977 0.94491 0.93958 0.93260 1.21684 1.35170 1.07032 0.93507 0.92173 1.25804 0.97185 1.01159 0.94944 1.70081 1.47914 1.37479 1.01439 0.85582 0.78378 0.79299 0.78880 1.18604 1.21432 1.20343 1.20210 0.94493 0.98425 0.96829 1.21148 0.99823 0.96383 0.95684 1.21470 0.96635 0.99547 0.96447 1.21480 0.93920 0.98780 1.00451 1.21352 1.00750 0.97120 0.95350 1.21168 0.95656 1.00315 0.97822 0.86647 0.90525 0.89359 0.70895 0.74325 0.92199 0.90297 0.96573 1.00517 0.93023 0.84394 0.83457 0.83795 0.84671 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.46 71.98 0.68 -1.43 16 2 C 0.07 1.60 4.13 30.96 0.13 1.72 16 3 H 0.11 2.70 7.72 -2.39 -0.02 2.69 16 4 O -0.34 -9.79 10.80 -47.28 -0.51 -10.30 16 5 C 0.65 19.87 9.16 129.86 1.19 21.06 16 6 O -0.57 -21.72 18.04 19.65 0.35 -21.37 16 7 N -0.70 -15.65 5.67 -572.80 -3.25 -18.89 16 8 C 0.09 1.67 3.81 44.50 0.17 1.84 16 9 H 0.18 1.35 7.73 -2.39 -0.02 1.33 16 10 C 0.50 13.00 6.90 87.66 0.60 13.61 16 11 O -0.57 -20.28 16.24 -3.05 -0.05 -20.33 16 12 N -0.69 -16.41 3.78 -446.10 -1.69 -18.10 16 13 C 0.19 5.83 2.17 44.25 0.10 5.93 16 14 H 0.06 2.24 7.44 -2.39 -0.02 2.22 16 15 C -0.10 -3.24 4.67 30.59 0.14 -3.09 16 16 C 0.03 1.37 4.86 29.85 0.15 1.52 16 17 C -0.54 -27.35 9.11 25.60 0.23 -27.12 16 18 H 0.06 2.96 7.74 -2.91 -0.02 2.93 16 19 C 0.01 0.38 5.46 84.66 0.46 0.85 16 20 N -0.93 -52.66 13.29 21.45 0.28 -52.38 16 21 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 25 C -0.10 -2.61 4.91 -19.87 -0.10 -2.71 16 26 C -0.11 -2.36 9.32 22.27 0.21 -2.15 16 27 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 28 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 29 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 30 C -0.13 -3.54 9.67 22.27 0.22 -3.32 16 31 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.45 8.56 8.96 -92.71 -0.83 7.73 16 35 H 0.42 7.25 8.60 -92.70 -0.80 6.45 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.02 0.72 7.75 -2.39 -0.02 0.71 16 39 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 40 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.14 2.23 7.73 -2.91 -0.02 2.21 16 42 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 45 H 0.11 3.08 8.04 -2.91 -0.02 3.06 16 Total: -1.00 -77.61 385.51 1.42 -76.19 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.61 Total: 21.82 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 4.85 Total: -0.04 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -4.65 Total: -89.37 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.21 Total: -52.00 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -77.61 1.42 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496706517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.388 kcal (2) G-P(sol) polarization free energy of solvation -77.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds