Wall clock time and date at job start Tue Mar 31 2020 17:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.46933 * 2 1 4 4 O 1.45702 * 110.63756 * 237.28948 * 2 1 3 5 5 C 1.33773 * 109.47887 * 241.31211 * 4 2 1 6 6 O 1.21510 * 123.07705 * 180.02562 * 5 4 2 7 7 N 1.34326 * 113.90213 * 0.08545 * 5 4 2 8 8 C 1.47098 * 108.70173 * 359.86244 * 7 5 4 9 9 H 1.09004 * 110.56318 * 118.76915 * 8 7 5 10 10 C 1.50700 * 110.56433 * 241.47763 * 8 7 5 11 11 O 1.21279 * 120.00042 * 16.55574 * 10 8 7 12 12 N 1.34778 * 119.99561 * 196.55724 * 10 8 7 13 13 C 1.46498 * 119.99484 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.47300 * 325.00198 * 13 12 10 15 15 C 1.52998 * 109.47059 * 204.99994 * 13 12 10 16 16 C 1.52995 * 109.47331 * 65.00299 * 15 13 12 17 17 C 1.50697 * 109.47824 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99443 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00776 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99358 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00379 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47124 * 89.99641 * 21 19 17 23 23 H 1.48501 * 109.46971 * 209.99896 * 21 19 17 24 24 H 1.48498 * 109.47048 * 329.99524 * 21 19 17 25 25 C 1.50703 * 109.47438 * 85.00131 * 13 12 10 26 26 C 1.38235 * 120.00293 * 219.99935 * 25 13 12 27 27 C 1.38230 * 119.99899 * 180.02562 * 26 25 13 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99481 * 40.01816 * 25 13 12 31 31 H 1.08998 * 109.46675 * 297.37028 * 1 2 3 32 32 H 1.09002 * 109.46847 * 57.36210 * 1 2 3 33 33 H 1.09001 * 109.47414 * 177.36532 * 1 2 3 34 34 H 0.97001 * 125.73681 * 179.97438 * 7 5 4 35 35 H 0.96995 * 120.00386 * 0.02562 * 12 10 8 36 36 H 1.09006 * 109.47325 * 185.00046 * 15 13 12 37 37 H 1.08999 * 109.47281 * 305.00099 * 15 13 12 38 38 H 1.09002 * 109.47092 * 300.00437 * 16 15 13 39 39 H 1.09008 * 109.47239 * 59.99828 * 16 15 13 40 40 H 0.97011 * 119.99539 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.99730 * 359.97438 * 26 25 13 42 42 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 44 44 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 45 45 H 1.07997 * 120.00441 * 0.02562 * 30 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0435 -0.7368 -1.1473 5 6 2.7673 -1.7780 -0.7211 6 8 3.3123 -2.5598 -1.4750 7 7 2.8362 -1.8820 0.6163 8 6 2.0702 -0.7782 1.2153 9 1 1.2486 -1.1653 1.8181 10 6 2.9689 0.0987 2.0486 11 8 4.1726 0.0342 1.9150 12 7 2.4349 0.9547 2.9423 13 6 3.3085 1.8067 3.7527 14 1 4.2235 1.2651 3.9926 15 6 2.5887 2.1905 5.0471 16 6 2.3517 0.9359 5.8901 17 6 1.6421 1.3137 7.1648 18 1 1.3862 2.3456 7.3548 19 6 1.3206 0.3423 8.0888 20 7 1.6327 -0.9142 7.8576 21 14 0.4404 0.8105 9.6685 22 1 -1.0277 0.7430 9.4559 23 1 0.8280 -0.1315 10.7491 24 1 0.8213 2.1924 10.0565 25 6 3.6513 3.0542 2.9798 26 6 4.9321 3.5714 3.0348 27 6 5.2463 4.7160 2.3263 28 6 4.2800 5.3429 1.5620 29 6 2.9996 4.8250 1.5059 30 6 2.6848 3.6815 2.2162 31 1 -0.3632 0.4725 0.9126 32 1 -0.3633 0.5543 -0.8654 33 1 -0.3634 -1.0266 -0.0472 34 1 3.3130 -2.5693 1.1074 35 1 1.4722 1.0060 3.0494 36 1 3.2020 2.8951 5.6089 37 1 1.6314 2.6531 4.8071 38 1 1.7384 0.2312 5.3284 39 1 3.3091 0.4732 6.1302 40 1 1.4069 -1.5977 8.5079 41 1 5.6870 3.0816 3.6320 42 1 6.2468 5.1203 2.3695 43 1 4.5243 6.2397 1.0119 44 1 2.2445 5.3150 0.9091 45 1 1.6839 3.2779 2.1738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496706518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:50 Heat of formation + Delta-G solvation = -94.313820 kcal Electronic energy + Delta-G solvation = -28809.091010 eV Core-core repulsion = 24791.284911 eV Total energy + Delta-G solvation = -4017.806099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.03019 -39.99515 -38.75205 -37.38405 -35.97808 -34.77164 -33.38391 -32.50261 -31.55258 -30.81161 -30.46709 -27.71677 -26.28120 -23.83706 -23.25039 -22.58603 -22.42280 -21.40071 -20.75692 -20.17990 -18.36515 -17.68239 -17.25886 -16.99728 -16.38650 -16.21273 -15.66307 -15.37677 -15.04199 -14.83039 -14.60462 -14.56237 -14.42828 -13.85679 -13.60816 -13.48960 -13.30544 -13.08808 -12.98921 -12.68261 -12.49057 -12.22363 -12.01502 -11.86371 -11.25668 -11.08165 -11.06001 -11.02759 -10.84139 -10.78819 -10.64535 -10.42662 -10.05137 -9.73209 -9.37508 -9.28902 -9.01378 -8.85312 -8.56367 -8.47652 -6.12989 -4.16380 1.40269 1.46216 2.32601 2.41273 2.56679 2.96928 3.22667 3.30586 3.33082 3.39788 3.77708 3.86695 4.24290 4.34853 4.37552 4.57955 4.83773 4.90345 4.92574 4.98222 5.02961 5.16414 5.23384 5.26169 5.36082 5.45565 5.53583 5.64206 5.66197 5.72746 5.99407 6.07152 6.15863 6.40664 6.47605 6.54636 6.57642 6.59586 6.78133 6.81884 7.03503 7.05623 7.46306 7.50260 7.60707 7.85136 7.92182 8.13306 8.26051 8.90499 9.49010 10.97748 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008440 B = 0.004031 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.768444 B = 6944.055497 C = 9184.839065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 H 0.119 0.881 4 O -0.321 6.321 5 C 0.652 3.348 6 O -0.522 6.522 7 N -0.708 5.708 8 C 0.077 3.923 9 H 0.130 0.870 10 C 0.505 3.495 11 O -0.520 6.520 12 N -0.702 5.702 13 C 0.182 3.818 14 H 0.096 0.904 15 C -0.113 4.113 16 C 0.024 3.976 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.082 4.082 26 C -0.105 4.105 27 C -0.120 4.120 28 C -0.128 4.128 29 C -0.123 4.123 30 C -0.110 4.110 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.441 0.559 35 H 0.404 0.596 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.018 0.982 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 7.436 -13.670 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.136 0.864 4 O -0.231 6.231 5 C 0.404 3.596 6 O -0.406 6.406 7 N -0.381 5.381 8 C -0.033 4.033 9 H 0.147 0.853 10 C 0.287 3.713 11 O -0.394 6.394 12 N -0.353 5.353 13 C 0.078 3.922 14 H 0.114 0.886 15 C -0.151 4.151 16 C -0.013 4.013 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.083 4.083 26 C -0.124 4.124 27 C -0.138 4.138 28 C -0.147 4.147 29 C -0.141 4.141 30 C -0.129 4.129 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.285 0.715 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.105 6.986 -14.413 16.055 hybrid contribution -0.697 -0.015 1.523 1.675 sum -1.802 6.971 -12.889 14.764 Atomic orbital electron populations 1.22183 0.90806 1.04446 1.04576 1.23793 0.96792 0.96535 0.80339 0.86352 1.87313 1.63904 1.39201 1.32720 1.18488 0.78051 0.80574 0.82466 1.91075 1.48975 1.42590 1.58007 1.45724 1.56209 1.30287 1.05862 1.22467 0.95470 0.89092 0.96318 0.85269 1.20396 0.89153 0.80868 0.80857 1.90758 1.14562 1.67276 1.66848 1.45963 1.10844 1.39680 1.38853 1.20189 0.95066 0.87071 0.89846 0.88641 1.21995 0.98989 1.01639 0.92436 1.19100 0.97132 0.91201 0.93821 1.21206 1.37844 0.93845 1.03378 0.92642 1.24998 0.95882 0.94987 0.98344 1.69959 1.47065 1.00260 1.35922 0.86617 0.79889 0.78413 0.83237 1.20650 1.21211 1.19852 1.20357 0.93728 0.96961 0.97237 1.21041 0.96009 0.96206 0.99137 1.21101 0.99270 0.95961 0.97440 1.21087 0.93698 1.00049 0.99819 1.21084 0.96613 0.96551 0.99855 1.20894 0.98935 0.95703 0.97318 0.89132 0.90046 0.90803 0.71465 0.76131 0.91287 0.92366 0.96371 0.96541 0.92924 0.85979 0.86301 0.86522 0.86397 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.46 37.16 0.35 -0.58 16 2 C 0.08 0.73 4.13 -26.16 -0.11 0.62 16 3 H 0.12 0.99 7.72 -51.93 -0.40 0.59 16 4 O -0.32 -4.12 10.80 -37.84 -0.41 -4.53 16 5 C 0.65 9.56 9.16 53.85 0.49 10.05 16 6 O -0.52 -9.52 18.04 -19.12 -0.34 -9.87 16 7 N -0.71 -8.59 5.67 -59.26 -0.34 -8.92 16 8 C 0.08 0.78 3.81 -68.19 -0.26 0.52 16 9 H 0.13 0.96 7.73 -51.93 -0.40 0.56 16 10 C 0.50 6.68 6.90 -10.98 -0.08 6.61 16 11 O -0.52 -9.04 16.24 5.56 0.09 -8.95 16 12 N -0.70 -8.73 3.77 -54.93 -0.21 -8.93 16 13 C 0.18 2.70 2.17 -69.08 -0.15 2.55 16 14 H 0.10 1.63 7.44 -51.93 -0.39 1.25 16 15 C -0.11 -1.93 4.67 -26.73 -0.12 -2.05 16 16 C 0.02 0.55 4.86 -27.89 -0.14 0.41 16 17 C -0.52 -13.49 9.11 -34.44 -0.31 -13.81 16 18 H 0.06 1.39 7.74 -52.48 -0.41 0.99 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -25.11 13.29 55.43 0.74 -24.38 16 21 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.08 -1.11 4.91 -104.62 -0.51 -1.63 16 26 C -0.11 -1.42 9.67 -39.59 -0.38 -1.80 16 27 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 28 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 29 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 30 C -0.11 -1.30 9.32 -39.58 -0.37 -1.67 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.44 4.97 8.96 -40.82 -0.37 4.61 16 35 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.41 7.75 -51.93 -0.40 0.01 16 39 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.26 7.00 8.31 -40.81 -0.34 6.66 16 41 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.12 1.15 7.72 -52.49 -0.41 0.74 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -34.49 385.49 -9.04 -43.53 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.48 Total: 5.50 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.88 Total: -4.61 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.19 Total: -42.23 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.66 Total: -23.35 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.49 -9.04 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496706518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.781 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds