Wall clock time and date at job start Tue Mar 31 2020 17:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.46933 * 2 1 4 4 O 1.45702 * 110.63756 * 237.28948 * 2 1 3 5 5 C 1.33773 * 109.47887 * 241.31211 * 4 2 1 6 6 O 1.21510 * 123.07705 * 180.02562 * 5 4 2 7 7 N 1.34326 * 113.90213 * 0.08545 * 5 4 2 8 8 C 1.47098 * 108.70173 * 359.86244 * 7 5 4 9 9 H 1.09004 * 110.56318 * 118.76915 * 8 7 5 10 10 C 1.50700 * 110.56433 * 241.47763 * 8 7 5 11 11 O 1.21279 * 120.00042 * 16.55574 * 10 8 7 12 12 N 1.34778 * 119.99561 * 196.55724 * 10 8 7 13 13 C 1.46498 * 119.99484 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.47300 * 325.00198 * 13 12 10 15 15 C 1.52998 * 109.47059 * 204.99994 * 13 12 10 16 16 C 1.52995 * 109.47331 * 65.00299 * 15 13 12 17 17 C 1.50697 * 109.47824 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99443 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00776 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99358 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00379 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47124 * 89.99641 * 21 19 17 23 23 H 1.48501 * 109.46971 * 209.99896 * 21 19 17 24 24 H 1.48498 * 109.47048 * 329.99524 * 21 19 17 25 25 C 1.50703 * 109.47438 * 85.00131 * 13 12 10 26 26 C 1.38235 * 120.00293 * 219.99935 * 25 13 12 27 27 C 1.38230 * 119.99899 * 180.02562 * 26 25 13 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99481 * 40.01816 * 25 13 12 31 31 H 1.08998 * 109.46675 * 297.37028 * 1 2 3 32 32 H 1.09002 * 109.46847 * 57.36210 * 1 2 3 33 33 H 1.09001 * 109.47414 * 177.36532 * 1 2 3 34 34 H 0.97001 * 125.73681 * 179.97438 * 7 5 4 35 35 H 0.96995 * 120.00386 * 0.02562 * 12 10 8 36 36 H 1.09006 * 109.47325 * 185.00046 * 15 13 12 37 37 H 1.08999 * 109.47281 * 305.00099 * 15 13 12 38 38 H 1.09002 * 109.47092 * 300.00437 * 16 15 13 39 39 H 1.09008 * 109.47239 * 59.99828 * 16 15 13 40 40 H 0.97011 * 119.99539 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.99730 * 359.97438 * 26 25 13 42 42 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 44 44 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 45 45 H 1.07997 * 120.00441 * 0.02562 * 30 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0435 -0.7368 -1.1473 5 6 2.7673 -1.7780 -0.7211 6 8 3.3123 -2.5598 -1.4750 7 7 2.8362 -1.8820 0.6163 8 6 2.0702 -0.7782 1.2153 9 1 1.2486 -1.1653 1.8181 10 6 2.9689 0.0987 2.0486 11 8 4.1726 0.0342 1.9150 12 7 2.4349 0.9547 2.9423 13 6 3.3085 1.8067 3.7527 14 1 4.2235 1.2651 3.9926 15 6 2.5887 2.1905 5.0471 16 6 2.3517 0.9359 5.8901 17 6 1.6421 1.3137 7.1648 18 1 1.3862 2.3456 7.3548 19 6 1.3206 0.3423 8.0888 20 7 1.6327 -0.9142 7.8576 21 14 0.4404 0.8105 9.6685 22 1 -1.0277 0.7430 9.4559 23 1 0.8280 -0.1315 10.7491 24 1 0.8213 2.1924 10.0565 25 6 3.6513 3.0542 2.9798 26 6 4.9321 3.5714 3.0348 27 6 5.2463 4.7160 2.3263 28 6 4.2800 5.3429 1.5620 29 6 2.9996 4.8250 1.5059 30 6 2.6848 3.6815 2.2162 31 1 -0.3632 0.4725 0.9126 32 1 -0.3633 0.5543 -0.8654 33 1 -0.3634 -1.0266 -0.0472 34 1 3.3130 -2.5693 1.1074 35 1 1.4722 1.0060 3.0494 36 1 3.2020 2.8951 5.6089 37 1 1.6314 2.6531 4.8071 38 1 1.7384 0.2312 5.3284 39 1 3.3091 0.4732 6.1302 40 1 1.4069 -1.5977 8.5079 41 1 5.6870 3.0816 3.6320 42 1 6.2468 5.1203 2.3695 43 1 4.5243 6.2397 1.0119 44 1 2.2445 5.3150 0.9091 45 1 1.6839 3.2779 2.1738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496706518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:49 Heat of formation + Delta-G solvation = -117.973553 kcal Electronic energy + Delta-G solvation = -28810.116973 eV Core-core repulsion = 24791.284911 eV Total energy + Delta-G solvation = -4018.832062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.02228 -41.08006 -39.76000 -38.53023 -37.22670 -35.79636 -35.15912 -33.54185 -32.60424 -31.84219 -31.68205 -28.79079 -27.62061 -25.30346 -24.12309 -23.53808 -23.37583 -22.61376 -22.07188 -21.33702 -19.38329 -18.67870 -18.52508 -18.25676 -17.75854 -17.33137 -16.75166 -16.55080 -16.34998 -16.00376 -15.75146 -15.58097 -15.40553 -15.02206 -14.64050 -14.56753 -14.43867 -14.19932 -14.02083 -13.81536 -13.69998 -13.35964 -12.99710 -12.84858 -12.72371 -12.53081 -12.44034 -12.13194 -12.04857 -11.92454 -11.87031 -11.75391 -11.47976 -11.41371 -11.18599 -10.52564 -10.42856 -10.18038 -9.75395 -9.55824 -8.16463 -6.26178 0.47323 0.56334 1.26479 1.37802 1.42801 1.44956 1.54318 1.54358 1.97259 2.43639 2.47674 2.92585 2.97261 3.18221 3.41176 3.57173 3.82187 3.87286 4.00048 4.09399 4.19055 4.26479 4.28020 4.33643 4.38659 4.68422 4.69325 4.78909 4.85355 4.86705 5.01338 5.12589 5.19240 5.22084 5.26970 5.33627 5.56117 5.58158 5.62182 5.66632 5.71357 5.82813 5.89161 6.02555 6.17240 6.27788 6.44058 6.83643 6.91350 7.10748 7.43493 8.94260 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008440 B = 0.004031 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.768444 B = 6944.055497 C = 9184.839065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.082 3.918 3 H 0.127 0.873 4 O -0.331 6.331 5 C 0.650 3.350 6 O -0.568 6.568 7 N -0.704 5.704 8 C 0.082 3.918 9 H 0.165 0.835 10 C 0.505 3.495 11 O -0.567 6.567 12 N -0.691 5.691 13 C 0.195 3.805 14 H 0.061 0.939 15 C -0.095 4.095 16 C 0.031 3.969 17 C -0.538 4.538 18 H 0.061 0.939 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.955 3.045 22 H -0.269 1.269 23 H -0.290 1.290 24 H -0.267 1.267 25 C -0.099 4.099 26 C -0.131 4.131 27 C -0.128 4.128 28 C -0.129 4.129 29 C -0.123 4.123 30 C -0.113 4.113 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.443 0.557 35 H 0.419 0.581 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.013 0.987 39 H -0.023 1.023 40 H 0.261 0.739 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.144 0.856 44 H 0.149 0.851 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 9.798 -14.147 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.145 0.855 4 O -0.241 6.241 5 C 0.404 3.596 6 O -0.456 6.456 7 N -0.375 5.375 8 C -0.027 4.027 9 H 0.182 0.818 10 C 0.289 3.711 11 O -0.445 6.445 12 N -0.343 5.343 13 C 0.090 3.910 14 H 0.079 0.921 15 C -0.132 4.132 16 C -0.006 4.006 17 C -0.576 4.576 18 H 0.079 0.921 19 C -0.192 4.192 20 N -0.571 5.571 21 Si 0.780 3.220 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.191 1.191 25 C -0.100 4.100 26 C -0.150 4.150 27 C -0.146 4.146 28 C -0.147 4.147 29 C -0.140 4.140 30 C -0.131 4.131 31 H 0.137 0.863 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.287 0.713 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.032 0.968 39 H -0.004 1.004 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.162 0.838 44 H 0.167 0.833 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.739 9.392 -14.866 17.977 hybrid contribution 0.147 -0.666 1.693 1.825 sum -3.591 8.727 -13.173 16.204 Atomic orbital electron populations 1.22262 0.87677 1.05059 1.06505 1.24185 0.98981 0.96025 0.78176 0.85524 1.87294 1.63592 1.38725 1.34486 1.18587 0.77784 0.80529 0.82729 1.91027 1.50931 1.44455 1.59193 1.45759 1.55906 1.30562 1.05284 1.22702 0.95069 0.88117 0.96828 0.81774 1.20917 0.88890 0.80622 0.80663 1.90747 1.16835 1.68609 1.68318 1.45816 1.11373 1.39059 1.38055 1.19748 0.93730 0.87911 0.89593 0.92055 1.21717 1.00129 0.98778 0.92622 1.18968 0.94569 0.93233 0.93877 1.21676 1.37364 0.94051 1.04488 0.92105 1.25829 0.96784 0.94926 1.01685 1.70085 1.48544 1.01318 1.37121 0.85600 0.79128 0.78125 0.79118 1.19475 1.21594 1.19097 1.20229 0.94541 0.96707 0.98573 1.21167 0.96191 0.97409 1.00247 1.21351 1.00584 0.95436 0.97262 1.21489 0.93546 1.00607 0.99090 1.21485 0.97278 0.95966 0.99318 1.21170 0.99413 0.95941 0.96619 0.86290 0.89054 0.90794 0.71284 0.74344 0.92161 0.90270 0.96839 1.00443 0.93016 0.87169 0.84735 0.83843 0.83321 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.46 71.98 0.68 -0.53 16 2 C 0.08 1.26 4.13 30.96 0.13 1.39 16 3 H 0.13 1.77 7.72 -2.39 -0.02 1.75 16 4 O -0.33 -8.18 10.80 -47.34 -0.51 -8.69 16 5 C 0.65 19.19 9.16 129.86 1.19 20.38 16 6 O -0.57 -21.38 18.04 19.65 0.35 -21.03 16 7 N -0.70 -16.94 5.67 -572.77 -3.25 -20.19 16 8 C 0.08 1.53 3.81 44.50 0.17 1.70 16 9 H 0.17 1.95 7.73 -2.38 -0.02 1.93 16 10 C 0.50 13.12 6.90 87.66 0.60 13.72 16 11 O -0.57 -20.35 16.24 -3.03 -0.05 -20.40 16 12 N -0.69 -16.47 3.77 -446.10 -1.68 -18.15 16 13 C 0.20 5.84 2.17 44.25 0.10 5.94 16 14 H 0.06 2.26 7.44 -2.39 -0.02 2.24 16 15 C -0.09 -3.22 4.67 30.59 0.14 -3.07 16 16 C 0.03 1.40 4.86 29.85 0.15 1.55 16 17 C -0.54 -27.58 9.11 25.60 0.23 -27.35 16 18 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 19 C 0.01 0.31 5.46 84.65 0.46 0.77 16 20 N -0.93 -52.98 13.29 21.45 0.28 -52.70 16 21 Si 0.95 41.39 29.54 68.60 2.03 43.42 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 25 C -0.10 -2.65 4.91 -19.87 -0.10 -2.74 16 26 C -0.13 -3.59 9.67 22.27 0.22 -3.38 16 27 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 28 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 29 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 30 C -0.11 -2.36 9.32 22.27 0.21 -2.15 16 31 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.44 10.21 8.96 -92.71 -0.83 9.38 16 35 H 0.42 7.30 8.60 -92.71 -0.80 6.51 16 36 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.01 0.61 7.75 -2.39 -0.02 0.60 16 39 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 40 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 41 H 0.11 3.11 8.04 -2.91 -0.02 3.08 16 42 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 43 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 44 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.14 2.17 7.72 -2.91 -0.02 2.15 16 Total: -1.00 -77.90 385.49 1.42 -76.48 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.61 Total: 21.91 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 4.85 Total: -0.66 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -4.64 Total: -91.03 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.21 Total: -50.12 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -77.90 1.42 -76.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496706518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.489 kcal (2) G-P(sol) polarization free energy of solvation -77.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds