Wall clock time and date at job start Tue Mar 31 2020 17:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.57676 * 2 1 4 4 O 1.46046 * 110.56378 * 237.12675 * 2 1 3 5 5 C 1.33767 * 109.51024 * 241.31474 * 4 2 1 6 6 O 1.21516 * 123.06988 * 180.02562 * 5 4 2 7 7 N 1.34003 * 113.86014 * 0.08494 * 5 4 2 8 8 C 1.47101 * 108.87639 * 359.97438 * 7 5 4 9 9 H 1.08999 * 110.56068 * 241.28046 * 8 7 5 10 10 C 1.50694 * 110.56399 * 118.57481 * 8 7 5 11 11 O 1.21283 * 120.00363 * 343.44085 * 10 8 7 12 12 N 1.34784 * 119.99988 * 163.44203 * 10 8 7 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 8 14 14 H 1.08999 * 109.47597 * 34.99540 * 13 12 10 15 15 C 1.52996 * 109.47222 * 155.00033 * 13 12 10 16 16 C 1.53008 * 109.47146 * 294.99811 * 15 13 12 17 17 C 1.50699 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00207 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99602 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99669 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99978 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47242 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47447 * 119.99786 * 21 19 17 24 24 H 1.48498 * 109.46897 * 239.99897 * 21 19 17 25 25 C 1.50706 * 109.47100 * 274.99628 * 13 12 10 26 26 C 1.38233 * 120.00024 * 319.73086 * 25 13 12 27 27 C 1.38236 * 120.00084 * 179.76407 * 26 25 13 28 28 C 1.38229 * 119.99777 * 0.48530 * 27 26 25 29 29 C 1.38237 * 120.00101 * 359.78955 * 28 27 26 30 30 C 1.38232 * 119.99788 * 140.00038 * 25 13 12 31 31 H 1.09002 * 109.46555 * 297.29074 * 1 2 3 32 32 H 1.08997 * 109.47332 * 57.28868 * 1 2 3 33 33 H 1.08997 * 109.46932 * 177.28836 * 1 2 3 34 34 H 0.96988 * 125.56655 * 180.02562 * 7 5 4 35 35 H 0.97000 * 119.99339 * 0.02562 * 12 10 8 36 36 H 1.09004 * 109.47220 * 54.99381 * 15 13 12 37 37 H 1.09006 * 109.47725 * 174.99836 * 15 13 12 38 38 H 1.09004 * 109.46710 * 299.99883 * 16 15 13 39 39 H 1.08993 * 109.46846 * 59.99635 * 16 15 13 40 40 H 0.97006 * 119.99765 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.99658 * 359.97438 * 26 25 13 42 42 H 1.08003 * 120.00023 * 180.25063 * 27 26 25 43 43 H 1.08002 * 120.00457 * 179.77183 * 28 27 26 44 44 H 1.08007 * 119.99919 * 179.97438 * 29 28 27 45 45 H 1.08001 * 120.00715 * 0.02562 * 30 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 8 2.0430 -0.7422 -1.1484 5 6 2.7666 -1.7829 -0.7208 6 8 3.3099 -2.5668 -1.4737 7 7 2.8365 -1.8826 0.6137 8 6 2.0707 -0.7796 1.2142 9 1 2.7208 -0.1463 1.8178 10 6 0.9347 -1.3155 2.0468 11 8 0.5738 -2.4655 1.9116 12 7 0.3198 -0.5170 2.9416 13 6 -0.7884 -1.0363 3.7468 14 1 -0.6057 -2.0845 3.9833 15 6 -0.8970 -0.2322 5.0438 16 6 0.3579 -0.4569 5.8899 17 6 0.2511 0.3356 7.1672 18 1 -0.6244 0.9389 7.3568 19 6 1.2708 0.2898 8.0942 20 7 2.3362 -0.4460 7.8638 21 14 1.1382 1.2715 9.6778 22 1 -0.1496 2.0108 9.6956 23 1 1.1952 0.3479 10.8392 24 1 2.2638 2.2369 9.7574 25 6 -2.0742 -0.9133 2.9703 26 6 -2.3196 0.2177 2.2143 27 6 -3.4968 0.3284 1.4983 28 6 -4.4330 -0.6875 1.5462 29 6 -4.1901 -1.8160 2.3068 30 6 -3.0106 -1.9290 3.0187 31 1 -0.3632 0.4712 0.9133 32 1 -0.3634 0.5553 -0.8646 33 1 -0.3633 -1.0265 -0.0486 34 1 3.3146 -2.5696 1.1037 35 1 0.6083 0.4029 3.0494 36 1 -0.9909 0.8277 4.8075 37 1 -1.7746 -0.5592 5.6017 38 1 0.4517 -1.5168 6.1262 39 1 1.2354 -0.1300 5.3321 40 1 3.0538 -0.4780 8.5158 41 1 -1.5900 1.0133 2.1805 42 1 -3.6867 1.2102 0.9044 43 1 -5.3544 -0.5994 0.9897 44 1 -4.9219 -2.6095 2.3446 45 1 -2.8210 -2.8105 3.6131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496706519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:54 Heat of formation + Delta-G solvation = -87.818012 kcal Electronic energy + Delta-G solvation = -29184.277234 eV Core-core repulsion = 25166.752815 eV Total energy + Delta-G solvation = -4017.524419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08802 -40.05212 -38.76759 -37.33022 -35.97439 -34.74767 -33.44000 -32.57832 -31.37982 -30.85603 -30.46938 -27.46923 -26.42824 -24.00578 -23.27502 -22.61476 -22.45627 -21.33071 -20.56006 -20.17352 -18.41709 -17.80468 -17.14714 -16.83274 -16.35899 -16.31945 -15.69604 -15.52502 -15.15961 -14.88231 -14.59677 -14.56832 -14.24249 -13.89132 -13.64543 -13.39751 -13.38177 -13.02600 -12.91682 -12.66236 -12.30788 -12.18874 -11.89027 -11.86138 -11.26692 -11.10127 -11.06671 -11.01909 -10.82589 -10.77602 -10.62845 -10.41133 -10.05330 -9.72626 -9.36915 -9.27309 -8.98904 -8.85880 -8.56640 -8.48008 -6.13179 -4.16436 1.38940 1.44593 2.34147 2.43322 2.60290 2.96914 3.22004 3.30884 3.33693 3.40097 3.76974 3.85352 4.28074 4.34939 4.41194 4.59105 4.84652 4.88697 4.91856 5.00004 5.03241 5.13515 5.23355 5.36813 5.41543 5.45972 5.52918 5.64627 5.72343 5.84993 5.98521 6.05869 6.15995 6.39932 6.46653 6.53688 6.57170 6.59741 6.77295 6.81938 7.04129 7.04976 7.46666 7.50681 7.60864 7.85176 7.93477 8.14241 8.26074 8.90784 9.49011 10.97604 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.004094 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.969002 B = 6837.727546 C = 9145.956911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.129 0.871 4 O -0.323 6.323 5 C 0.652 3.348 6 O -0.523 6.523 7 N -0.708 5.708 8 C 0.074 3.926 9 H 0.129 0.871 10 C 0.512 3.488 11 O -0.520 6.520 12 N -0.706 5.706 13 C 0.182 3.818 14 H 0.096 0.904 15 C -0.113 4.113 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.081 4.081 26 C -0.111 4.111 27 C -0.122 4.122 28 C -0.128 4.128 29 C -0.119 4.119 30 C -0.105 4.105 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.441 0.559 35 H 0.403 0.597 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.016 0.984 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.099 4.101 -13.664 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.028 3.972 3 H 0.147 0.853 4 O -0.234 6.234 5 C 0.404 3.596 6 O -0.408 6.408 7 N -0.380 5.380 8 C -0.036 4.036 9 H 0.147 0.853 10 C 0.295 3.705 11 O -0.395 6.395 12 N -0.357 5.357 13 C 0.078 3.922 14 H 0.114 0.886 15 C -0.151 4.151 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.082 4.082 26 C -0.129 4.129 27 C -0.140 4.140 28 C -0.146 4.146 29 C -0.137 4.137 30 C -0.124 4.124 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.285 0.715 35 H 0.239 0.761 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.041 2.991 -14.406 16.312 hybrid contribution 0.329 0.667 1.523 1.695 sum -6.713 3.658 -12.883 14.981 Atomic orbital electron populations 1.22509 0.91343 1.05026 1.04757 1.23898 0.97007 0.96108 0.80224 0.85341 1.87368 1.63763 1.39347 1.32873 1.18395 0.78107 0.80607 0.82481 1.91077 1.49478 1.42166 1.58099 1.45648 1.54531 1.31871 1.05922 1.22490 0.94471 0.90247 0.96408 0.85319 1.20241 0.83181 0.86578 0.80463 1.90757 1.64473 1.17429 1.66872 1.46022 1.35061 1.15427 1.39192 1.20179 0.81294 1.00797 0.89890 0.88633 1.21997 1.02421 0.98219 0.92431 1.19103 0.91046 0.97320 0.93805 1.21246 1.03789 1.28068 1.03109 0.92589 1.25003 0.95394 0.95473 0.98367 1.69964 1.07756 1.39733 1.35750 0.86568 0.78052 0.79981 0.83595 1.19717 1.20990 1.21012 1.20349 0.96445 0.94182 0.97201 1.20892 0.97155 0.97398 0.97449 1.21066 0.94314 0.98809 0.99831 1.21078 0.99292 0.94417 0.99825 1.21104 0.97235 0.97960 0.97434 1.21039 0.93765 0.98474 0.99093 0.88711 0.90123 0.90630 0.71526 0.76138 0.92380 0.91317 0.96555 0.96349 0.92978 0.86310 0.86409 0.86555 0.86339 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.34 37.16 0.31 -1.27 16 2 C 0.08 0.73 4.52 -26.16 -0.12 0.62 16 3 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 4 O -0.32 -4.13 10.81 -37.82 -0.41 -4.54 16 5 C 0.65 9.54 9.16 53.71 0.49 10.04 16 6 O -0.52 -9.57 18.04 -19.12 -0.34 -9.92 16 7 N -0.71 -8.53 5.64 -59.36 -0.33 -8.87 16 8 C 0.07 0.74 4.17 -68.19 -0.28 0.46 16 9 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 10 C 0.51 6.62 5.00 -10.98 -0.05 6.56 16 11 O -0.52 -8.83 16.11 5.56 0.09 -8.75 16 12 N -0.71 -8.54 2.72 -54.94 -0.15 -8.69 16 13 C 0.18 2.64 2.17 -69.09 -0.15 2.49 16 14 H 0.10 1.61 7.43 -51.93 -0.39 1.22 16 15 C -0.11 -1.91 4.67 -26.73 -0.12 -2.03 16 16 C 0.02 0.54 4.86 -27.88 -0.14 0.41 16 17 C -0.52 -13.45 9.11 -34.44 -0.31 -13.77 16 18 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 21 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 C -0.08 -1.05 4.91 -104.62 -0.51 -1.57 16 26 C -0.11 -1.23 7.82 -39.58 -0.31 -1.54 16 27 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 28 C -0.13 -1.34 10.05 -39.59 -0.40 -1.74 16 29 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 30 C -0.11 -1.37 9.67 -39.58 -0.38 -1.75 16 31 H 0.09 0.74 3.69 -51.93 -0.19 0.55 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.91 7.46 -51.93 -0.39 0.52 16 34 H 0.44 4.96 8.96 -40.82 -0.37 4.59 16 35 H 0.40 3.96 8.61 -40.82 -0.35 3.61 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.42 7.75 -51.93 -0.40 0.01 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.12 1.09 6.43 -52.48 -0.34 0.76 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 45 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -34.28 374.91 -8.85 -43.13 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.19 Total: 6.03 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.88 Total: -5.03 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.25 Total: -41.93 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.66 Total: -23.20 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.28 -8.85 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496706519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.687 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds