Wall clock time and date at job start Tue Mar 31 2020 17:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.57676 * 2 1 4 4 O 1.46046 * 110.56378 * 237.12675 * 2 1 3 5 5 C 1.33767 * 109.51024 * 241.31474 * 4 2 1 6 6 O 1.21516 * 123.06988 * 180.02562 * 5 4 2 7 7 N 1.34003 * 113.86014 * 0.08494 * 5 4 2 8 8 C 1.47101 * 108.87639 * 359.97438 * 7 5 4 9 9 H 1.08999 * 110.56068 * 241.28046 * 8 7 5 10 10 C 1.50694 * 110.56399 * 118.57481 * 8 7 5 11 11 O 1.21283 * 120.00363 * 343.44085 * 10 8 7 12 12 N 1.34784 * 119.99988 * 163.44203 * 10 8 7 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 8 14 14 H 1.08999 * 109.47597 * 34.99540 * 13 12 10 15 15 C 1.52996 * 109.47222 * 155.00033 * 13 12 10 16 16 C 1.53008 * 109.47146 * 294.99811 * 15 13 12 17 17 C 1.50699 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00207 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99602 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99669 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99978 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47242 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47447 * 119.99786 * 21 19 17 24 24 H 1.48498 * 109.46897 * 239.99897 * 21 19 17 25 25 C 1.50706 * 109.47100 * 274.99628 * 13 12 10 26 26 C 1.38233 * 120.00024 * 319.73086 * 25 13 12 27 27 C 1.38236 * 120.00084 * 179.76407 * 26 25 13 28 28 C 1.38229 * 119.99777 * 0.48530 * 27 26 25 29 29 C 1.38237 * 120.00101 * 359.78955 * 28 27 26 30 30 C 1.38232 * 119.99788 * 140.00038 * 25 13 12 31 31 H 1.09002 * 109.46555 * 297.29074 * 1 2 3 32 32 H 1.08997 * 109.47332 * 57.28868 * 1 2 3 33 33 H 1.08997 * 109.46932 * 177.28836 * 1 2 3 34 34 H 0.96988 * 125.56655 * 180.02562 * 7 5 4 35 35 H 0.97000 * 119.99339 * 0.02562 * 12 10 8 36 36 H 1.09004 * 109.47220 * 54.99381 * 15 13 12 37 37 H 1.09006 * 109.47725 * 174.99836 * 15 13 12 38 38 H 1.09004 * 109.46710 * 299.99883 * 16 15 13 39 39 H 1.08993 * 109.46846 * 59.99635 * 16 15 13 40 40 H 0.97006 * 119.99765 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.99658 * 359.97438 * 26 25 13 42 42 H 1.08003 * 120.00023 * 180.25063 * 27 26 25 43 43 H 1.08002 * 120.00457 * 179.77183 * 28 27 26 44 44 H 1.08007 * 119.99919 * 179.97438 * 29 28 27 45 45 H 1.08001 * 120.00715 * 0.02562 * 30 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 8 2.0430 -0.7422 -1.1484 5 6 2.7666 -1.7829 -0.7208 6 8 3.3099 -2.5668 -1.4737 7 7 2.8365 -1.8826 0.6137 8 6 2.0707 -0.7796 1.2142 9 1 2.7208 -0.1463 1.8178 10 6 0.9347 -1.3155 2.0468 11 8 0.5738 -2.4655 1.9116 12 7 0.3198 -0.5170 2.9416 13 6 -0.7884 -1.0363 3.7468 14 1 -0.6057 -2.0845 3.9833 15 6 -0.8970 -0.2322 5.0438 16 6 0.3579 -0.4569 5.8899 17 6 0.2511 0.3356 7.1672 18 1 -0.6244 0.9389 7.3568 19 6 1.2708 0.2898 8.0942 20 7 2.3362 -0.4460 7.8638 21 14 1.1382 1.2715 9.6778 22 1 -0.1496 2.0108 9.6956 23 1 1.1952 0.3479 10.8392 24 1 2.2638 2.2369 9.7574 25 6 -2.0742 -0.9133 2.9703 26 6 -2.3196 0.2177 2.2143 27 6 -3.4968 0.3284 1.4983 28 6 -4.4330 -0.6875 1.5462 29 6 -4.1901 -1.8160 2.3068 30 6 -3.0106 -1.9290 3.0187 31 1 -0.3632 0.4712 0.9133 32 1 -0.3634 0.5553 -0.8646 33 1 -0.3633 -1.0265 -0.0486 34 1 3.3146 -2.5696 1.1037 35 1 0.6083 0.4029 3.0494 36 1 -0.9909 0.8277 4.8075 37 1 -1.7746 -0.5592 5.6017 38 1 0.4517 -1.5168 6.1262 39 1 1.2354 -0.1300 5.3321 40 1 3.0538 -0.4780 8.5158 41 1 -1.5900 1.0133 2.1805 42 1 -3.6867 1.2102 0.9044 43 1 -5.3544 -0.5994 0.9897 44 1 -4.9219 -2.6095 2.3446 45 1 -2.8210 -2.8105 3.6131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496706519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:53 Heat of formation + Delta-G solvation = -111.433995 kcal Electronic energy + Delta-G solvation = -29185.301300 eV Core-core repulsion = 25166.752815 eV Total energy + Delta-G solvation = -4018.548485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.06555 -41.10906 -39.74698 -38.47211 -37.20216 -35.75817 -35.17224 -33.71453 -32.44966 -31.82663 -31.71228 -28.57266 -27.73004 -25.43771 -24.25146 -23.52550 -23.45095 -22.59194 -21.81248 -21.28099 -19.35175 -18.90275 -18.48996 -18.00571 -17.64518 -17.39413 -16.75472 -16.58593 -16.46893 -16.03139 -15.87630 -15.55336 -15.25480 -14.91496 -14.70740 -14.60518 -14.46546 -14.23104 -13.94334 -13.90182 -13.60929 -13.35237 -13.08675 -12.88052 -12.63043 -12.50310 -12.42019 -12.11926 -12.05070 -11.96332 -11.86069 -11.70000 -11.44851 -11.40208 -11.16218 -10.53209 -10.40168 -10.12124 -9.72778 -9.53362 -8.16639 -6.26162 0.49055 0.57545 1.30221 1.41573 1.42243 1.44672 1.55227 1.58697 1.99633 2.43490 2.49452 2.94787 2.98016 3.18186 3.39019 3.69232 3.81460 3.84980 4.00860 4.17144 4.19754 4.22490 4.28145 4.33482 4.40109 4.64305 4.70666 4.72895 4.74933 4.81427 5.02782 5.11620 5.16208 5.21346 5.23780 5.36094 5.56743 5.59355 5.63407 5.68317 5.72366 5.84183 5.89703 6.05274 6.18465 6.28138 6.47058 6.86021 6.91848 7.14506 7.43515 8.94303 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.004094 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.969002 B = 6837.727546 C = 9145.956911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.085 3.915 3 H 0.182 0.818 4 O -0.332 6.332 5 C 0.650 3.350 6 O -0.571 6.571 7 N -0.703 5.703 8 C 0.076 3.924 9 H 0.169 0.831 10 C 0.512 3.488 11 O -0.567 6.567 12 N -0.695 5.695 13 C 0.196 3.804 14 H 0.060 0.940 15 C -0.095 4.095 16 C 0.030 3.970 17 C -0.536 4.536 18 H 0.061 0.939 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.955 3.045 22 H -0.261 1.261 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.097 4.097 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.129 4.129 29 C -0.128 4.128 30 C -0.132 4.132 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.038 0.962 34 H 0.442 0.558 35 H 0.418 0.582 36 H 0.079 0.921 37 H 0.059 0.941 38 H -0.023 1.023 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.133 0.867 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 7.567 -14.282 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.030 3.970 3 H 0.199 0.801 4 O -0.242 6.242 5 C 0.403 3.597 6 O -0.459 6.459 7 N -0.374 5.374 8 C -0.033 4.033 9 H 0.187 0.813 10 C 0.297 3.703 11 O -0.446 6.446 12 N -0.348 5.348 13 C 0.091 3.909 14 H 0.078 0.922 15 C -0.133 4.133 16 C -0.007 4.007 17 C -0.574 4.574 18 H 0.079 0.921 19 C -0.193 4.193 20 N -0.571 5.571 21 Si 0.780 3.220 22 H -0.185 1.185 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.098 4.098 26 C -0.129 4.129 27 C -0.138 4.138 28 C -0.147 4.147 29 C -0.146 4.146 30 C -0.150 4.150 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.286 0.714 35 H 0.256 0.744 36 H 0.097 0.903 37 H 0.078 0.922 38 H -0.005 1.005 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.239 6.516 -15.000 18.312 hybrid contribution 0.593 -0.425 1.740 1.886 sum -7.646 6.091 -13.260 16.474 Atomic orbital electron populations 1.22504 0.91409 1.03089 1.06267 1.24427 0.97031 0.97590 0.77976 0.80081 1.87346 1.63315 1.38938 1.34596 1.18493 0.77840 0.80569 0.82748 1.91029 1.51553 1.44018 1.59326 1.45687 1.54004 1.32376 1.05340 1.22797 0.93656 0.89839 0.97023 0.81338 1.20772 0.83366 0.85901 0.80252 1.90747 1.65904 1.19611 1.68293 1.45878 1.34379 1.16037 1.38456 1.19722 0.83181 0.98397 0.89604 0.92161 1.21720 0.99105 0.99789 0.92657 1.18972 0.93525 0.94312 0.93863 1.21715 1.03626 1.27866 1.04234 0.92090 1.25833 0.95188 0.96539 1.01719 1.70088 1.08629 1.41423 1.36978 0.85552 0.78515 0.78527 0.79373 1.18528 1.21335 1.20411 1.20196 0.95550 0.95527 0.98506 1.21142 0.98162 0.96953 0.96677 1.21462 0.93482 0.99633 0.99244 1.21468 1.00351 0.93774 0.99104 1.21337 0.96863 0.99121 0.97323 1.21148 0.95056 0.98591 1.00231 0.87454 0.88159 0.94315 0.71404 0.74379 0.90255 0.92220 1.00492 0.96823 0.93030 0.84059 0.83279 0.83967 0.84928 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.34 71.98 0.60 -2.02 16 2 C 0.08 1.21 4.52 30.96 0.14 1.35 16 3 H 0.18 0.79 8.14 -2.39 -0.02 0.77 16 4 O -0.33 -7.96 10.81 -47.28 -0.51 -8.47 16 5 C 0.65 18.98 9.16 129.91 1.19 20.17 16 6 O -0.57 -21.48 18.04 19.63 0.35 -21.12 16 7 N -0.70 -16.67 5.64 -573.42 -3.24 -19.91 16 8 C 0.08 1.36 4.17 44.50 0.19 1.55 16 9 H 0.17 1.75 8.14 -2.39 -0.02 1.73 16 10 C 0.51 13.01 5.00 87.65 0.44 13.45 16 11 O -0.57 -20.05 16.11 -3.04 -0.05 -20.10 16 12 N -0.70 -16.14 2.72 -446.10 -1.21 -17.36 16 13 C 0.20 5.75 2.17 44.25 0.10 5.85 16 14 H 0.06 2.20 7.43 -2.39 -0.02 2.18 16 15 C -0.09 -3.19 4.67 30.60 0.14 -3.05 16 16 C 0.03 1.39 4.86 29.85 0.15 1.53 16 17 C -0.54 -27.49 9.11 25.60 0.23 -27.26 16 18 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 19 C 0.01 0.28 5.46 84.66 0.46 0.74 16 20 N -0.93 -53.06 13.29 21.45 0.28 -52.77 16 21 Si 0.95 41.46 29.54 68.60 2.03 43.49 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 25 C -0.10 -2.49 4.91 -19.87 -0.10 -2.58 16 26 C -0.11 -2.18 7.82 22.27 0.17 -2.01 16 27 C -0.12 -2.05 10.05 22.27 0.22 -1.82 16 28 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 29 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 30 C -0.13 -3.52 9.67 22.27 0.22 -3.31 16 31 H 0.11 1.30 3.69 -2.39 -0.01 1.29 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 0.89 7.46 -2.39 -0.02 0.87 16 34 H 0.44 10.12 8.96 -92.72 -0.83 9.29 16 35 H 0.42 7.10 8.61 -92.71 -0.80 6.30 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 38 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 39 H 0.01 0.62 7.75 -2.39 -0.02 0.60 16 40 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 41 H 0.14 2.02 6.43 -2.91 -0.02 2.01 16 42 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 44 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.11 3.03 8.04 -2.91 -0.02 3.01 16 Total: -1.00 -78.62 374.91 1.66 -76.96 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.59 Total: 21.43 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 4.60 Total: -2.14 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -4.16 Total: -90.04 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.21 Total: -49.70 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -78.62 1.66 -76.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496706519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.479 kcal (2) G-P(sol) polarization free energy of solvation -78.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds